feat(microscopy): add dicom microscopy extension and mode (#3247)

* skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
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commit 075008c674
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+import { id } from './id';
+import React, { Suspense } from 'react';
+import getPanelModule from './getPanelModule';
+import getCommandsModule from './getCommandsModule';
+
+import { useViewportGrid } from '@ohif/ui';
+import getDicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler';
+import getDicomMicroscopySRSopClassHandler from './DicomMicroscopySRSopClassHandler';
+import MicroscopyService from './services/MicroscopyService';
+
+const Component = React.lazy(() => {
+  return import('./DicomMicroscopyViewport');
+});
+
+const MicroscopyViewport = props => {
+  return (
+    <Suspense fallback={<div>Loading...</div>}>
+      <Component {...props} />
+    </Suspense>
+  );
+};
+
+/**
+ * You can remove any of the following modules if you don't need them.
+ */
+export default {
+  /**
+   * Only required property. Should be a unique value across all extensions.
+   * You ID can be anything you want, but it should be unique.
+   */
+  id,
+
+  async preRegistration({
+    servicesManager,
+    commandsManager,
+    configuration = {},
+    appConfig,
+  }) {
+    servicesManager.registerService(
+      MicroscopyService.REGISTRATION(servicesManager)
+    );
+  },
+
+  /**
+   * ViewportModule should provide a list of viewports that will be available in OHIF
+   * for Modes to consume and use in the viewports. Each viewport is defined by
+   * {name, component} object. Example of a viewport module is the CornerstoneViewport
+   * that is provided by the Cornerstone extension in OHIF.
+   */
+  getViewportModule({ servicesManager, extensionManager, commandsManager }) {
+    /**
+     *
+     * @param props {*}
+     * @param props.displaySets
+     * @param props.viewportIndex
+     * @param props.viewportLabel
+     * @param props.dataSource
+     * @param props.viewportOptions
+     * @param props.displaySetOptions
+     * @returns
+     */
+    const ExtendedMicroscopyViewport = props => {
+      const { viewportOptions } = props;
+
+      const [viewportGrid, viewportGridService] = useViewportGrid();
+      const { viewports, activeViewportIndex } = viewportGrid;
+
+      return (
+        <MicroscopyViewport
+          servicesManager={servicesManager}
+          extensionManager={extensionManager}
+          commandsManager={commandsManager}
+          activeViewportIndex={activeViewportIndex}
+          setViewportActive={(viewportIndex: number) => {
+            viewportGridService.setActiveViewportIndex(viewportIndex);
+          }}
+          viewportData={viewportOptions}
+          {...props}
+        />
+      );
+    };
+
+    return [
+      {
+        name: 'microscopy-dicom',
+        component: ExtendedMicroscopyViewport,
+      },
+    ];
+  },
+
+  /**
+   * SopClassHandlerModule should provide a list of sop class handlers that will be
+   * available in OHIF for Modes to consume and use to create displaySets from Series.
+   * Each sop class handler is defined by a { name, sopClassUids, getDisplaySetsFromSeries}.
+   * Examples include the default sop class handler provided by the default extension
+   */
+  getSopClassHandlerModule({
+    servicesManager,
+    commandsManager,
+    extensionManager,
+  }) {
+    return [
+      getDicomMicroscopySopClassHandler({
+        servicesManager,
+        extensionManager,
+      }),
+      getDicomMicroscopySRSopClassHandler({
+        servicesManager,
+        extensionManager,
+      }),
+    ];
+  },
+
+  getPanelModule,
+
+  getCommandsModule,
+};