feat(microscopy): add dicom microscopy extension and mode (#3247)

* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy

platform/viewer/.webpack/webpack.pwa.js

@@ -10,7 +10,6 @@ const CopyWebpackPlugin = require('copy-webpack-plugin');
 const HtmlWebpackPlugin = require('html-webpack-plugin');
 const { InjectManifest } = require('workbox-webpack-plugin');
 const MiniCssExtractPlugin = require('mini-css-extract-plugin');
-const CopyPlugin = require('copy-webpack-plugin');
 // ~~ Directories
 const SRC_DIR = path.join(__dirname, '../src');
 const DIST_DIR = path.join(__dirname, '../dist');
@@ -101,6 +100,21 @@ module.exports = (env, argv) => {
             from: `${PUBLIC_DIR}/${APP_CONFIG}`,
             to: `${DIST_DIR}/app-config.js`,
           },
+          // Copy Dicom Microscopy Viewer build files
+          {
+            from:
+              '../../../node_modules/dicom-microscopy-viewer/dist/dynamic-import',
+            to: DIST_DIR,
+            globOptions: {
+              ignore: ['*.js.map'],
+            },
+          },
+          // Copy dicom-image-loader build files
+          {
+            from:
+              '../../../node_modules/@cornerstonejs/dicom-image-loader/dist/dynamic-import',
+            to: DIST_DIR,
+          },
         ],
       }),
       // Generate "index.html" w/ correct includes/imports
@@ -120,15 +134,6 @@ module.exports = (env, argv) => {
         // Need to exclude the theme as it is updated independently
         exclude: [/theme/],
       }),
-      new CopyPlugin({
-        patterns: [
-          {
-            from:
-              '../../../node_modules/@cornerstonejs/dicom-image-loader/dist/dynamic-import',
-            to: DIST_DIR,
-          },
-        ],
-      }),
     ],
     // https://webpack.js.org/configuration/dev-server/
     devServer: {