Chore/kill yalc with fire (#629)

* init

* more shifting

* Move @babel dependencies up to workspace root

* Begin updating dependent libraries to use sync'd webpack builds w/ watches

* Commit changes before a long weekend

* Split packages into platform and extensions

* Consolidate how/where we specify file/module type entrypoints

* Make it possible to pass in extensions as App props

* Resolve viewer's modules

* Target for UMD bundle

* Add Webpack Stylus loader

* Provide WebPack build options for microscopy, vtk, and ui

* Better entrypoint for extensions

* Push changes up to switch PCs

* Fix ESM symlink build for Viewers

* Shift docs to root

* Specify additional lerna config props

* Begin providing basic readme info

* Rename example extension folder

* Shift links to bottom of doc

* First attempt at a netlify deploy preview

* Attempt to fix deploy preview build

* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands

* Try to use global gitbook-cli

* Export node_modules path

* More agressive with modifying PATH

* Follow deploy log output advice

* try again to set bin path

* Try swapping bash with a new shell

* Try bash -l instead of exec bash

* Annd let's try again

* and again

* We may have figured it out johnny, boy

* We need to pull cornerstone-wado-image-loader files from hoisted node_modules

* Attempt to fix ticks/escapes

* Change copy syntax; try running tests on viewers from root for circleci

* Lower version to match circleci image

* Try alternative jest-canvas-mock location and version file syntax

* Run version command instead of calling node directly

* Try alternative jest transform

* Set path and enable workspaces

* Add codecov flags

* Use cpx so our copying finishes?

* Get all platform unit tests to run

* Run and report individually and in parallel

* Try once relying on codecov yaml to split w/ flags

* Add projects to split by flags

* Generate separate reports

* Trigger codecov after everything has finished running; these may not support flags

* Use recommended flags from issue comments for codecov

* Fix typo

* Remove clear flag

* Shift back to calling codecov from root

* Generate example for codecov issue

* Try fixing paths

* Simplify

* Try using codecov orb

* Bump circleci version

* Upload core and viewer

* Use full string paths

* Remove individual codecov calls

* Fix dir

* Combine files before upload

* Escape anchors

* tryfix syntax

* Escape string literal

* Combine lines to reduce path

* long paths

* Use home alias

* Fix filename

* Try to see the contents of our cat'd file

* Also upload `core`

* Try running with aliased folder

* Fix path; split PR and Merge unit tests into separate jobs

* Set default threshold

* Fix typo

* Changing to scoped package names

* Adding note

* Catch more updates

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.0
 - @ohif/extension-dicom-html@0.0.4-alpha.0
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0
 - @ohif/extension-dicom-pdf@0.0.8-alpha.0
 - @ohif/extension-vtk@0.1.4-alpha.0
 - @ohif/core@0.11.1-alpha.0
 - @ohif/i18n@0.2.3-alpha.0
 - @ohif/ui@0.2.18-alpha.0
 - @ohif/viewer@0.0.22-alpha.0

* Clean up primary readme

* Support for dev and dev:* commands

* Shift build command; satisfy default PWA build

* Remove old scripts

* Clean up UI to set webpack scripts

* Tidy up project links

* Clean duplicate code in UI project

* Update UI project's docs

* Clean up ui and i18n config

* Reduce duplicate code in `@ohif/core`

* Fix @ohif/ui versions

* bump @ohif/core versions

* Redux testkit dep

* Remove unused/duplicate config files for projects/packages

* ohif-core --> @ohif/core

* Safer publish command

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.1
 - @ohif/extension-dicom-html@0.0.4-alpha.1
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1
 - @ohif/extension-dicom-pdf@0.0.8-alpha.1
 - @ohif/extension-vtk@0.1.4-alpha.1
 - @ohif/core@0.11.1-alpha.1
 - @ohif/i18n@0.2.3-alpha.1
 - @ohif/ui@0.2.18-alpha.1
 - @ohif/viewer@0.0.22-alpha.1

* test version bump

* Add global prettier config

* chore(release): publish %s [skip ci]

 - @ohif/viewer@0.0.22-alpha.2

* test lerna publish

* Update package.jsons

* Fix build scripts

* catch changes

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.2
 - @ohif/extension-dicom-html@0.0.4-alpha.2
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2
 - @ohif/extension-dicom-pdf@0.0.8-alpha.2
 - @ohif/extension-vtk@0.1.4-alpha.2
 - @ohif/core@0.11.1-alpha.2
 - @ohif/i18n@0.2.3-alpha.2
 - @ohif/ui@0.2.18-alpha.2
 - @ohif/viewer@0.0.22-alpha.3

* fix eslint issues caused by eslint 6 and our react-app config

* Publish with canary tag

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.3
 - @ohif/extension-dicom-html@0.0.4-alpha.3
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3
 - @ohif/extension-dicom-pdf@0.0.8-alpha.3
 - @ohif/extension-vtk@0.1.4-alpha.3
 - @ohif/core@0.11.1-alpha.3
 - @ohif/i18n@0.2.3-alpha.3
 - @ohif/ui@0.2.18-alpha.3
 - @ohif/viewer@0.0.22-alpha.4

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.4
 - @ohif/extension-dicom-html@0.0.4-alpha.4
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4
 - @ohif/extension-dicom-pdf@0.0.8-alpha.4
 - @ohif/extension-vtk@0.1.4-alpha.4
 - @ohif/core@0.11.1-alpha.4
 - @ohif/i18n@0.2.3-alpha.4
 - @ohif/ui@0.2.18-alpha.4
 - @ohif/viewer@0.0.22-alpha.5

* Simplify build

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.5
 - @ohif/extension-dicom-html@0.0.4-alpha.5
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5
 - @ohif/extension-dicom-pdf@0.0.8-alpha.5
 - @ohif/extension-vtk@0.1.4-alpha.5
 - @ohif/core@0.11.1-alpha.5
 - @ohif/i18n@0.2.3-alpha.5
 - @ohif/ui@0.2.18-alpha.5
 - @ohif/viewer@0.0.22-alpha.6

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.6
 - @ohif/extension-dicom-html@0.0.4-alpha.6
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6
 - @ohif/extension-dicom-pdf@0.0.8-alpha.6
 - @ohif/extension-vtk@0.1.4-alpha.6
 - @ohif/core@0.11.1-alpha.6
 - @ohif/i18n@0.2.3-alpha.6
 - @ohif/ui@0.2.18-alpha.6
 - @ohif/viewer@0.0.22-alpha.7

* Split version and publish

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.7
 - @ohif/extension-dicom-html@0.0.4-alpha.7
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7
 - @ohif/extension-dicom-pdf@0.0.8-alpha.7
 - @ohif/extension-vtk@0.1.4-alpha.7
 - @ohif/core@0.11.1-alpha.7
 - @ohif/i18n@0.2.3-alpha.7
 - @ohif/ui@0.2.18-alpha.7
 - @ohif/viewer@0.0.22-alpha.8

* Try simplify netlify build

* react-viewerbase --> @ohif/ui

* add test for stylus loader

* Try new way to specify publish path

* Use an output folder that won't be ignored

* Try move command

* fiddle with paths

* Dig for some information

* Make sure we're in root for our commands

* Remove discovery

* Setup script-tag example

* Fix typo

* Move config folder

* Update cornerstone extension to use shared/root webpack configs

* capture changes

* Update extension webpack configs

* Don't check in docz output

* Fix babel runtime resolution issue

* Simplify ui build steps

* Push in progress

* Shift directories

* Get viewer dev path to work

* Fix viewer commonjs build

* Fix build pwa config for viewers

* Make sure our package specific command can be called from root

* Update notes

* Fix imports and misc. merge notes

* Bump wado-image-loader version

* Switch up commands to remove webworkers copy

* Fix CI config

* Fix more broken package references

* Add react-dropzone

* Persist so e2e test can use

* Fix lockfile

* Use cypress orb to simplify CI

* Fix config

* Try again

* Install yarn latest for orb

* Install yarn a different way

* Wait on correct port

* Run tests in viewer project

* Fix cypress config

* Make Cypress happier - use default location

* Simplify e2e testing

* Capture UI changes since fork

* Catch core up

* Grab latest deps after merge

* Fix broken import

* Make sure cornerstone-wado-image-loader resolves to 3+

* Note regarding orbs

* Fix refresh on 404 routes

* Fix odd error for cornerstone-wado-image-loader

* Different target for UMD

* Simplify dev script

* Try to get fancy with netlify output

* Let's do it again

* Try to fix measurementTools issue

* See if we can get our lerna magic to work on merge to monorepo branch
This commit is contained in:
Danny Brown authored and GitHub committed 2019-08-13 15:36:46 -04:00
1 parent cac911f08e
commit 08ff214ea6
919 files changed
+45652 -52097

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@@ -0,0 +1,102 @@
import { connect } from 'react-redux';
import { CineDialog } from '@ohif/ui';
import OHIF from '@ohif/core';
import csTools from 'cornerstone-tools';
// Our target output kills the `as` and "import" throws a keyword error
// import { import as toolImport, getToolState } from 'cornerstone-tools';
import cloneDeep from 'lodash.clonedeep';
const toolImport = csTools.import;
const scrollToIndex = toolImport('util/scrollToIndex');
const { setViewportSpecificData } = OHIF.redux.actions;
// Why do I need or care about any of this info?
// A dispatch action should be able to pull this at the time of an event?
// `isPlaying` and `cineFrameRate` might matter, but I think we can prop pass for those.
const mapStateToProps = state => {
// Get activeViewport's `cine` and `stack`
const { viewportSpecificData, activeViewportIndex } = state.viewports;
const { cine, dom } = viewportSpecificData[activeViewportIndex] || {};
const cineData = cine || {
isPlaying: false,
cineFrameRate: 24,
};
// New props we're creating?
return {
activeEnabledElement: dom,
activeViewportCineData: cineData,
activeViewportIndex: state.viewports.activeViewportIndex,
};
};
const mapDispatchToProps = dispatch => {
return {
dispatchSetViewportSpecificData: (viewportIndex, data) => {
dispatch(setViewportSpecificData(viewportIndex, data));
},
};
};
const mergeProps = (propsFromState, propsFromDispatch, ownProps) => {
const {
activeEnabledElement,
activeViewportCineData,
activeViewportIndex,
} = propsFromState;
return {
cineFrameRate: activeViewportCineData.cineFrameRate,
isPlaying: activeViewportCineData.isPlaying,
onPlayPauseChanged: isPlaying => {
const cine = cloneDeep(activeViewportCineData);
cine.isPlaying = !cine.isPlaying;
propsFromDispatch.dispatchSetViewportSpecificData(activeViewportIndex, {
cine,
});
},
onFrameRateChanged: frameRate => {
const cine = cloneDeep(activeViewportCineData);
cine.cineFrameRate = frameRate;
propsFromDispatch.dispatchSetViewportSpecificData(activeViewportIndex, {
cine,
});
},
onClickNextButton: () => {
const stackData = csTools.getToolState(activeEnabledElement, 'stack');
if (!stackData || !stackData.data || !stackData.data.length) return;
const { currentImageIdIndex, imageIds } = stackData.data[0];
if (currentImageIdIndex >= imageIds.length - 1) return;
scrollToIndex(activeEnabledElement, currentImageIdIndex + 1);
},
onClickBackButton: () => {
const stackData = csTools.getToolState(activeEnabledElement, 'stack');
if (!stackData || !stackData.data || !stackData.data.length) return;
const { currentImageIdIndex } = stackData.data[0];
if (currentImageIdIndex === 0) return;
scrollToIndex(activeEnabledElement, currentImageIdIndex - 1);
},
onClickSkipToStart: () => {
const stackData = csTools.getToolState(activeEnabledElement, 'stack');
if (!stackData || !stackData.data || !stackData.data.length) return;
scrollToIndex(activeEnabledElement, 0);
},
onClickSkipToEnd: () => {
const stackData = csTools.getToolState(activeEnabledElement, 'stack');
if (!stackData || !stackData.data || !stackData.data.length) return;
const lastIndex = stackData.data[0].imageIds.length - 1;
scrollToIndex(activeEnabledElement, lastIndex);
},
};
};
const ConnectedCineDialog = connect(
mapStateToProps,
mapDispatchToProps,
mergeProps
)(CineDialog);
export default ConnectedCineDialog;
@@ -0,0 +1,13 @@
import Header from '../components/Header/Header.js';
import { connect } from 'react-redux';
const mapStateToProps = state => {
return {
user: state.oidc && state.oidc.user,
isOpen: state.ui.userPreferencesModalOpen,
};
};
const ConnectedHeader = connect(mapStateToProps)(Header);
export default ConnectedHeader;
@@ -0,0 +1,24 @@
import { connect } from 'react-redux';
import LabellingOverlay from './LabellingOverlay';
const mapStateToProps = state => {
if (!state.ui || !state.ui.labelling) {
return {
visible: false,
};
}
const labellingFlowData = state.ui.labelling;
return {
visible: false,
...labellingFlowData,
};
};
const ConnectedLabellingOverlay = connect(
mapStateToProps,
null
)(LabellingOverlay);
export default ConnectedLabellingOverlay;
@@ -0,0 +1,41 @@
import { LayoutButton } from '@ohif/ui';
import OHIF from '@ohif/core';
import { connect } from 'react-redux';
const { setLayout } = OHIF.redux.actions;
const mapStateToProps = state => {
return {
currentLayout: state.viewports.layout,
};
};
const mapDispatchToProps = dispatch => {
return {
// TODO: Change if layout switched becomes more complex
onChange: selectedCell => {
let viewports = [];
const rows = selectedCell.row + 1;
const columns = selectedCell.col + 1;
const numViewports = rows * columns;
for (let i = 0; i < numViewports; i++) {
viewports.push({
height: `${100 / rows}%`,
width: `${100 / columns}%`,
});
}
const layout = {
viewports,
};
dispatch(setLayout(layout));
},
};
};
const ConnectedLayoutButton = connect(
mapStateToProps,
mapDispatchToProps
)(LayoutButton);
export default ConnectedLayoutButton;
@@ -0,0 +1,36 @@
import { LayoutManager } from '@ohif/ui';
import { MODULE_TYPES } from '@ohif/core';
import { connect } from 'react-redux';
import { extensionManager } from './../App.js';
const mapStateToProps = state => {
const availableViewportModules = {};
const viewportModules = extensionManager.modules[MODULE_TYPES.VIEWPORT];
viewportModules.forEach(moduleDefinition => {
availableViewportModules[moduleDefinition.extensionId] =
moduleDefinition.module;
});
// TODO: Use something like state.plugins.defaultPlugin[MODULE_TYPES.VIEWPORT]
let defaultPlugin;
if (viewportModules.length) {
defaultPlugin = viewportModules[0].extensionId;
}
return {
layout: state.viewports.layout,
activeViewportIndex: state.viewports.activeViewportIndex,
// TODO: rename `availableViewportModules`
availablePlugins: availableViewportModules,
// TODO: rename `defaultViewportModule`
defaultPlugin,
};
};
const ConnectedLayoutManager = connect(
mapStateToProps,
null
)(LayoutManager);
export default ConnectedLayoutManager;
@@ -0,0 +1,103 @@
import OHIF from "@ohif/core";
import PluginSwitch from "./PluginSwitch.js";
import { commandsManager } from "./../App.js";
import { connect } from "react-redux";
const { setLayout } = OHIF.redux.actions;
const mapStateToProps = state => {
const { activeViewportIndex, layout, viewportSpecificData } = state.viewports;
return {
activeViewportIndex,
viewportSpecificData,
layout
};
};
const mapDispatchToProps = dispatch => {
return {
setLayout: data => {
dispatch(setLayout(data));
}
};
};
/*function setSingleLayoutData(originalArray, viewportIndex, data) {
const viewports = originalArray.slice();
const layoutData = Object.assign({}, viewports[viewportIndex], data);
viewports[viewportIndex] = layoutData;
return viewports;
}*/
const mergeProps = (propsFromState, propsFromDispatch, ownProps) => {
//const { activeViewportIndex, layout } = propsFromState;
//const { setLayout } = propsFromDispatch;
// TODO: Do not display certain options if the current display set
// cannot be displayed using these view types
const buttons = [
/*{
text: 'Acquired',
type: 'command',
icon: 'bars',
active: false,
onClick: () => {
console.warn('Original Acquisition');
const layoutData = setSingleLayoutData(
layout.viewports,
activeViewportIndex,
{ plugin: 'cornerstone' }
);
setLayout({ viewports: layoutData });
},
},
{
text: 'Axial',
icon: 'cube',
active: false,
onClick: () => {
commandsManager.runCommand('axial');
},
},
{
text: 'Sagittal',
icon: 'cube',
active: false,
onClick: () => {
commandsManager.runCommand('sagittal');
},
},
{
text: 'Coronal',
icon: 'cube',
active: false,
onClick: () => {
commandsManager.runCommand('coronal');
},
},*/
{
label: "2D MPR",
icon: "cube",
onClick: () => {
commandsManager.runCommand("mpr2d");
}
}
];
return {
buttons
};
};
const ConnectedPluginSwitch = connect(
mapStateToProps,
mapDispatchToProps,
mergeProps
)(PluginSwitch);
export default ConnectedPluginSwitch;
@@ -0,0 +1,40 @@
import { connect } from 'react-redux';
import { StudyBrowser } from '@ohif/ui';
import cloneDeep from 'lodash.clonedeep';
// TODO
// - Determine in which display set is active from Redux (activeViewportIndex and layout viewportData)
// - Pass in errors and stack loading progress from Redux
const mapStateToProps = (state, ownProps) => {
// If we know that the stack loading progress details have changed,
// we can try to update the component state so that the thumbnail
// progress bar is updated
const stackLoadingProgressMap = state.loading.progress;
const studiesWithLoadingData = cloneDeep(ownProps.studies);
studiesWithLoadingData.forEach(study => {
study.thumbnails.forEach(data => {
const { displaySetInstanceUid } = data;
const stackId = `StackProgress:${displaySetInstanceUid}`;
const stackProgressData = stackLoadingProgressMap[stackId];
let stackPercentComplete = 0;
if (stackProgressData) {
stackPercentComplete = stackProgressData.percentComplete;
}
data.stackPercentComplete = stackPercentComplete;
});
});
return {
studies: studiesWithLoadingData,
};
};
const ConnectedStudyBrowser = connect(
mapStateToProps,
null
)(StudyBrowser);
export default ConnectedStudyBrowser;
@@ -0,0 +1,26 @@
import { connect } from "react-redux";
import StudyLoadingMonitor from "../components/StudyLoadingMonitor.js";
import OHIF from "@ohif/core";
const {
setStudyLoadingProgress,
clearStudyLoadingProgress
} = OHIF.redux.actions;
const mapDispatchToProps = dispatch => {
return {
setStudyLoadingProgress: (progressId, progressData) => {
dispatch(setStudyLoadingProgress(progressId, progressData));
},
clearStudyLoadingProgress: progressId => {
dispatch(clearStudyLoadingProgress(progressId));
}
};
};
const ConnectedStudyLoadingMonitor = connect(
null,
mapDispatchToProps
)(StudyLoadingMonitor);
export default ConnectedStudyLoadingMonitor;
@@ -0,0 +1,34 @@
import { connect } from 'react-redux';
import ToolContextMenu from './ToolContextMenu';
const mapStateToProps = (state, ownProps) => {
if (!state.ui || !state.ui.contextMenu) {
return {
visible: false,
};
}
const { viewportIndex } = ownProps;
const toolContextMenuData = state.ui.contextMenu[viewportIndex];
let availableTools;
if (
state.extensions &&
state.extensions.cornerstone &&
state.extensions.cornerstone.availableTools
) {
availableTools = state.extensions.cornerstone.availableTools;
}
return {
...toolContextMenuData,
availableTools,
};
};
const ConnectedToolContextMenu = connect(
mapStateToProps,
null
)(ToolContextMenu);
export default ConnectedToolContextMenu;
@@ -0,0 +1,15 @@
// TODO: REPLACE THIS WITH A CONTEXT PROVIDER
// EVERYTHING IN `VIEWER.JS` COULD USE THIS FOR APPROPRIATE CONTEXT
import ToolbarRow from './ToolbarRow';
import { connect } from 'react-redux';
import { getActiveContexts } from './../store/layout/selectors.js';
const mapStateToProps = state => {
return {
activeContexts: getActiveContexts(state),
};
};
const ConnectedToolbarRow = connect(mapStateToProps)(ToolbarRow);
export default ConnectedToolbarRow;
@@ -0,0 +1,30 @@
import { connect } from "react-redux";
import Viewer from "./Viewer.js";
import OHIF from "@ohif/core";
const { setTimepoints, setMeasurements } = OHIF.redux.actions;
const mapStateToProps = (state, ownProps) => {
return {
viewports: state.viewports.viewportSpecificData,
activeViewportIndex: state.viewports.activeViewportIndex
};
};
const mapDispatchToProps = dispatch => {
return {
onTimepointsUpdated: timepoints => {
dispatch(setTimepoints(timepoints));
},
onMeasurementsUpdated: measurements => {
dispatch(setMeasurements(measurements));
}
};
};
const ConnectedViewer = connect(
mapStateToProps,
mapDispatchToProps
)(Viewer);
export default ConnectedViewer;
@@ -0,0 +1,37 @@
import OHIF from "@ohif/core";
import ViewerMain from "./ViewerMain";
import { connect } from "react-redux";
const {
setViewportSpecificData,
clearViewportSpecificData
} = OHIF.redux.actions;
const mapStateToProps = state => {
const { activeViewportIndex, layout, viewportSpecificData } = state.viewports;
return {
activeViewportIndex,
layout,
viewportSpecificData,
viewports: state.viewports
};
};
const mapDispatchToProps = dispatch => {
return {
setViewportSpecificData: (viewportIndex, data) => {
dispatch(setViewportSpecificData(viewportIndex, data));
},
clearViewportSpecificData: () => {
dispatch(clearViewportSpecificData());
}
};
};
const ConnectedViewerMain = connect(
mapStateToProps,
mapDispatchToProps
)(ViewerMain);
export default ConnectedViewerMain;
@@ -0,0 +1,19 @@
import { connect } from 'react-redux';
import ViewerRetrieveStudyData from './ViewerRetrieveStudyData.js';
const isActive = a => a.active === true;
const mapStateToProps = state => {
const activeServer = state.servers.servers.find(isActive);
return {
server: activeServer,
};
};
const ConnectedViewerRetrieveStudyData = connect(
mapStateToProps,
null
)(ViewerRetrieveStudyData);
export default ConnectedViewerRetrieveStudyData;
@@ -0,0 +1,23 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import LabellingManager from '../components/Labelling/LabellingManager';
class LabellingOverlay extends Component {
static propTypes = {
visible: PropTypes.bool.isRequired,
};
static defaultProps = {
visible: false,
};
render() {
if (!this.props.visible) {
return null;
}
return <LabellingManager {...this.props} />;
}
}
export default LabellingOverlay;
@@ -0,0 +1,3 @@
.icon-rotate-120 {
transform: rotate(120deg);
}
@@ -0,0 +1,22 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import { ExpandableToolMenu } from '@ohif/ui';
import './PluginSwitch.css';
class PluginSwitch extends Component {
static propTypes = {
buttons: PropTypes.array,
};
static defaultProps = {};
render() {
return (
<div className="PluginSwitch">
<ExpandableToolMenu buttons={this.props.buttons} text={'View'} />
</div>
);
}
}
export default PluginSwitch;
@@ -0,0 +1,34 @@
.ToolContextMenu {
position: absolute;
background-color: white;
border: 1px solid white;
border-radius: 5px;
z-index: 1000;
display: block;
width: 170px;
}
.ToolContextMenu > ul {
list-style-type: none;
padding-left: 0;
margin: 0;
}
.ToolContextMenu > ul > li > button {
padding: 10px;
font-size: 14px;
border: none;
color: #516873;
border-radius: 3px;
outline: none;
cursor: pointer;
background: none;
}
.ToolContextMenu > ul > li > button:hover {
color: #16202b;
}
.ToolContextMenu > ul > li > button:active {
color: #79f9fe;
}
@@ -0,0 +1,253 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import getMeasurementLocationCallback from '../lib/getMeasurementLocationCallback';
import './ToolContextMenu.css';
const toolTypes = [
'Angle',
'Bidirectional',
'Length',
'FreehandMouse',
'EllipticalRoi',
'CircleRoi',
'RectangleRoi',
];
let defaultDropdownItems = [
{
actionType: 'Delete',
action: ({ nearbyToolData, eventData }) => {
const element = eventData.element;
cornerstoneTools.removeToolState(
element,
nearbyToolData.toolType,
nearbyToolData.tool
);
cornerstone.updateImage(element);
},
},
{
actionType: 'setLabel',
action: ({ nearbyToolData, eventData }) => {
const { tool } = nearbyToolData;
const options = {
skipAddLabelButton: true,
editLocation: true,
};
getMeasurementLocationCallback(eventData, tool, options);
},
},
{
actionType: 'setDescription',
action: ({ nearbyToolData, eventData }) => {
const { tool } = nearbyToolData;
const options = {
editDescriptionOnDialog: true,
};
getMeasurementLocationCallback(eventData, tool, options);
},
},
];
function getNearbyToolData(element, coords, toolTypes) {
const nearbyTool = {};
let pointNearTool = false;
toolTypes.forEach(toolType => {
const toolData = cornerstoneTools.getToolState(element, toolType);
if (!toolData) {
return;
}
toolData.data.forEach(function(data, index) {
// TODO: Fix this, it's ugly
let toolInterface = cornerstoneTools.getToolForElement(element, toolType);
if (!toolInterface) {
toolInterface = cornerstoneTools.getToolForElement(
element,
`${toolType}Tool`
);
}
if (!toolInterface) {
throw new Error('Tool not found.');
}
if (toolInterface.pointNearTool(element, data, coords)) {
pointNearTool = true;
nearbyTool.tool = data;
nearbyTool.index = index;
nearbyTool.toolType = toolType;
}
});
if (pointNearTool) {
return false;
}
});
return pointNearTool ? nearbyTool : undefined;
}
function getDropdownItems(eventData, isTouchEvent = false, availableTools) {
const nearbyToolData = getNearbyToolData(
eventData.element,
eventData.currentPoints.canvas,
toolTypes,
availableTools
);
// Annotate tools for touch events already have a press handle to edit it, has a better UX for deleting it
if (
isTouchEvent &&
nearbyToolData &&
nearbyToolData.toolType === 'arrowAnnotate'
) {
return;
}
let dropdownItems = [];
if (nearbyToolData) {
defaultDropdownItems.forEach(function(item) {
item.params = {
eventData,
nearbyToolData,
};
if (item.actionType === 'Delete') {
item.text = 'Delete measurement';
}
if (item.actionType === 'setLabel') {
item.text = 'Relabel';
}
if (item.actionType === 'setDescription') {
item.text = `${
nearbyToolData.tool.description ? 'Edit' : 'Add'
} Description`;
}
dropdownItems.push(item);
});
}
return dropdownItems;
}
class ToolContextMenu extends Component {
static propTypes = {
isTouchEvent: PropTypes.bool.isRequired,
eventData: PropTypes.object,
onClose: PropTypes.func,
availableTools: PropTypes.array,
visible: PropTypes.bool.isRequired,
};
static defaultProps = {
visible: true,
isTouchEvent: false,
};
constructor(props) {
super(props);
this.mainElement = React.createRef();
}
render() {
if (!this.props.eventData) {
return null;
}
const { isTouchEvent, eventData, availableTools } = this.props;
const dropdownItems = getDropdownItems(
eventData,
isTouchEvent,
availableTools
);
// Skip if there is no dropdown item
if (!dropdownItems.length) {
return '';
}
const dropdownComponents = dropdownItems.map(item => {
const itemOnClick = event => {
item.action(item.params);
if (this.props.onClose) {
this.props.onClose();
}
};
return (
<li key={item.actionType}>
<button className="form-action" onClick={itemOnClick}>
<span key={item.actionType}>{item.text}</span>
</button>
</li>
);
});
const position = {
top: `${eventData.currentPoints.canvas.y}px`,
left: `${eventData.currentPoints.canvas.x}px`,
};
return (
<div className="ToolContextMenu" style={position} ref={this.mainElement}>
<ul className="bounded">{dropdownComponents}</ul>
</div>
);
}
componentDidMount = () => {
if (this.mainElement.current) {
this.updateElementPosition();
}
};
componentDidUpdate = () => {
if (this.mainElement.current) {
this.updateElementPosition();
}
};
updateElementPosition = () => {
const {
offsetParent,
offsetTop,
offsetHeight,
offsetWidth,
offsetLeft,
} = this.mainElement.current;
const { eventData } = this.props;
if (offsetTop + offsetHeight > offsetParent.offsetHeight) {
const offBoundPixels =
offsetTop + offsetHeight - offsetParent.offsetHeight;
const top = eventData.currentPoints.canvas.y - offBoundPixels;
this.mainElement.current.style.top = `${top > 0 ? top : 0}px`;
}
if (offsetLeft + offsetWidth > offsetParent.offsetWidth) {
const offBoundPixels =
offsetLeft + offsetWidth - offsetParent.offsetWidth;
const left = eventData.currentPoints.canvas.x - offBoundPixels;
this.mainElement.current.style.left = `${left > 0 ? left : 0}px`;
}
};
}
export default ToolContextMenu;
@@ -0,0 +1,17 @@
.ToolbarRow {
border-bottom: var(--ui-border-thickness) solid var(--ui-border-color);
flex: 0 0 auto;
height: var(--toolbar-height);
padding-left: 1rem;
padding-right: 1rem;
position: relative;
transition: height 300ms ease;
width: 100%;
display: flex;
align-items: center;
}
ToolbarRow.expanded {
height: calc(var(--toolbar-height) + var(--toolbar-drawer-height));
}
@@ -0,0 +1,250 @@
import './ToolbarRow.css';
import React, { Component } from 'react';
import {
ExpandableToolMenu,
RoundedButtonGroup,
ToolbarButton,
} from '@ohif/ui';
import { commandsManager, extensionManager } from './../App.js';
import ConnectedCineDialog from './ConnectedCineDialog';
import ConnectedLayoutButton from './ConnectedLayoutButton';
import ConnectedPluginSwitch from './ConnectedPluginSwitch.js';
import { MODULE_TYPES } from '@ohif/core';
import PropTypes from 'prop-types';
import { withTranslation } from 'react-i18next';
class ToolbarRow extends Component {
// TODO: Simplify these? isOpen can be computed if we say "any" value for selected,
// closed if selected is null/undefined
static propTypes = {
isLeftSidePanelOpen: PropTypes.bool.isRequired,
isRightSidePanelOpen: PropTypes.bool.isRequired,
selectedLeftSidePanel: PropTypes.string.isRequired,
selectedRightSidePanel: PropTypes.string.isRequired,
handleSidePanelChange: PropTypes.func,
activeContexts: PropTypes.arrayOf(PropTypes.string).isRequired,
};
constructor(props) {
super(props);
const toolbarButtonDefinitions = _getVisibleToolbarButtons.call(this);
// TODO:
// If it's a tool that can be active... Mark it as active?
// - Tools that are on/off?
// - Tools that can be bound to multiple buttons?
// Normal ToolbarButtons...
// Just how high do we need to hoist this state?
// Why ToolbarRow instead of just Toolbar? Do we have any others?
this.state = {
toolbarButtons: toolbarButtonDefinitions,
activeButtons: [],
isCineDialogOpen: false,
};
this._handleBuiltIn = _handleBuiltIn.bind(this);
const panelModules = extensionManager.modules[MODULE_TYPES.PANEL];
this.buttonGroups = {
left: [
// TODO: This should come from extensions, instead of being baked in
{
value: 'studies',
icon: 'th-large',
bottomLabel: this.props.t('Series'),
},
],
right: [],
};
panelModules.forEach(panelExtension => {
const panelModule = panelExtension.module;
const defaultContexts = Array.from(panelModule.defaultContext);
// MENU OPTIONS
panelModule.menuOptions.forEach(menuOption => {
const contexts = Array.from(menuOption.context || defaultContexts);
const activeContextIncludesAnyPanelContexts = this.props.activeContexts.some(
actx => contexts.includes(actx)
);
if (activeContextIncludesAnyPanelContexts) {
const menuOptionEntry = {
value: menuOption.target,
icon: menuOption.icon,
bottomLabel: menuOption.label,
};
const from = menuOption.from || 'right';
this.buttonGroups[from].push(menuOptionEntry);
}
});
});
}
componentDidUpdate(prevProps) {
const activeContextsChanged =
prevProps.activeContexts !== this.props.activeContexts;
if (activeContextsChanged) {
this.setState({
toolbarButtons: _getVisibleToolbarButtons.call(this),
});
}
}
render() {
const buttonComponents = _getButtonComponents.call(
this,
this.state.toolbarButtons,
this.state.activeButtons
);
const cineDialogContainerStyle = {
display: this.state.isCineDialogOpen ? 'block' : 'none',
position: 'absolute',
top: '82px',
zIndex: 999,
};
const onPress = (side, value) => {
this.props.handleSidePanelChange(side, value);
};
const onPressLeft = onPress.bind(this, 'left');
const onPressRight = onPress.bind(this, 'right');
return (
<>
<div className="ToolbarRow">
<div className="pull-left m-t-1 p-y-1" style={{ padding: '10px' }}>
<RoundedButtonGroup
options={this.buttonGroups.left}
value={this.props.selectedLeftSidePanel || ''}
onValueChanged={onPressLeft}
/>
</div>
{buttonComponents}
<ConnectedLayoutButton />
<ConnectedPluginSwitch />
<div
className="pull-right m-t-1 rm-x-1"
style={{ marginLeft: 'auto' }}
>
{this.buttonGroups.right.length && (
<RoundedButtonGroup
options={this.buttonGroups.right}
value={this.props.selectedRightSidePanel || ''}
onValueChanged={onPressRight}
/>
)}
</div>
</div>
<div className="CineDialogContainer" style={cineDialogContainerStyle}>
<ConnectedCineDialog />
</div>
</>
);
}
}
/**
* Determine which extension buttons should be showing, if they're
* active, and what their onClick behavior should be.
*/
function _getButtonComponents(toolbarButtons, activeButtons) {
return toolbarButtons.map((button, index) => {
let activeCommand = undefined;
if (button.buttons && button.buttons.length) {
// Iterate over button definitions and update `onClick` behavior
const childButtons = button.buttons.map(childButton => {
childButton.onClick = _handleToolbarButtonClick.bind(this, childButton);
if (activeButtons.indexOf(childButton.id) > -1) {
activeCommand = childButton.id;
}
return childButton;
});
return (
<ExpandableToolMenu
key={button.id}
text={button.label}
icon={button.icon}
buttons={childButtons}
activeCommand={activeCommand}
/>
);
}
return (
<ToolbarButton
key={button.id}
label={button.label}
icon={button.icon}
onClick={_handleToolbarButtonClick.bind(this, button)}
isActive={activeButtons.includes(button.id)}
/>
);
});
}
/**
* A handy way for us to handle different button types. IE. firing commands for
* buttons, or initiation built in behavior.
*
* @param {*} button
* @param {*} evt
* @param {*} props
*/
function _handleToolbarButtonClick(button, evt, props) {
if (button.commandName) {
const options = Object.assign({ evt }, button.commandOptions);
commandsManager.runCommand(button.commandName, options);
}
// TODO: Use Types ENUM
// TODO: We can update this to be a `getter` on the extension to query
// For the active tools after we apply our updates?
if (button.type === 'setToolActive') {
this.setState({
activeButtons: [button.id],
});
} else if (button.type === 'builtIn') {
this._handleBuiltIn(button.options);
}
}
/**
*
*/
function _getVisibleToolbarButtons() {
const toolbarModules = extensionManager.modules[MODULE_TYPES.TOOLBAR];
const toolbarButtonDefinitions = [];
toolbarModules.forEach(extension => {
const { definitions, defaultContext } = extension.module;
definitions.forEach(definition => {
const context = definition.context || defaultContext;
if (this.props.activeContexts.includes(context)) {
toolbarButtonDefinitions.push(definition);
}
});
});
return toolbarButtonDefinitions;
}
function _handleBuiltIn({ behavior } = {}) {
if (behavior === 'CINE') {
this.setState({
isCineDialogOpen: !this.state.isCineDialogOpen,
});
}
}
export default withTranslation('Common')(ToolbarRow);
@@ -0,0 +1,10 @@
#viewer {
background-color: black;
width: 100%;
}
.loadingTextDiv {
color: var(--text-secondary-color);
font-size: 30px;
}
@@ -0,0 +1,377 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import classNames from 'classnames';
import { MODULE_TYPES } from '@ohif/core';
import OHIF from '@ohif/core';
import moment from 'moment';
import WhiteLabellingContext from '../WhiteLabellingContext.js';
import ConnectedHeader from './ConnectedHeader.js';
import ConnectedToolbarRow from './ConnectedToolbarRow.js';
import ConnectedLabellingOverlay from './ConnectedLabellingOverlay';
import ConnectedStudyBrowser from './ConnectedStudyBrowser.js';
import ConnectedViewerMain from './ConnectedViewerMain.js';
import SidePanel from './../components/SidePanel.js';
import { extensionManager } from './../App.js';
import UserManagerContext from '../UserManagerContext';
import './Viewer.css';
/**
* Inits OHIF Hanging Protocol's onReady.
* It waits for OHIF Hanging Protocol to be ready to instantiate the ProtocolEngine
* Hanging Protocol will use OHIF LayoutManager to render viewports properly
*/
/*const initHangingProtocol = () => {
// When Hanging Protocol is ready
HP.ProtocolStore.onReady(() => {
// Gets all StudyMetadata objects: necessary for Hanging Protocol to access study metadata
const studyMetadataList = OHIF.viewer.StudyMetadataList.all();
// Instantiate StudyMetadataSource: necessary for Hanging Protocol to get study metadata
const studyMetadataSource = new OHIF.studies.classes.OHIFStudyMetadataSource();
// Get prior studies map
const studyPriorsMap = OHIF.studylist.functions.getStudyPriorsMap(studyMetadataList);
// Creates Protocol Engine object with required arguments
const ProtocolEngine = new HP.ProtocolEngine(layoutManager, studyMetadataList, studyPriorsMap, studyMetadataSource);
// Sets up Hanging Protocol engine
HP.setEngine(ProtocolEngine);
});
};*/
/*const viewportUtils = OHIF.viewerbase.viewportUtils;
OHIF.viewer.functionList = {
toggleCineDialog: viewportUtils.toggleCineDialog,
toggleCinePlay: viewportUtils.toggleCinePlay,
clearTools: viewportUtils.clearTools,
resetViewport: viewportUtils.resetViewport,
invert: viewportUtils.invert
};*/
class Viewer extends Component {
static propTypes = {
studies: PropTypes.array,
studyInstanceUids: PropTypes.array,
onTimepointsUpdated: PropTypes.func,
onMeasurementsUpdated: PropTypes.func,
// window.store.getState().viewports.viewportSpecificData
viewports: PropTypes.object.isRequired,
// window.store.getState().viewports.activeViewportIndex
activeViewportIndex: PropTypes.number.isRequired,
};
constructor(props) {
super(props);
OHIF.measurements.MeasurementApi.setConfiguration({
dataExchange: {
retrieve: this.retrieveMeasurements,
store: this.storeMeasurements,
},
});
OHIF.measurements.TimepointApi.setConfiguration({
dataExchange: {
retrieve: this.retrieveTimepoints,
store: this.storeTimepoints,
remove: this.removeTimepoint,
update: this.updateTimepoint,
disassociate: this.disassociateStudy,
},
});
}
state = {
isLeftSidePanelOpen: true,
isRightSidePanelOpen: false,
selectedRightSidePanel: '',
selectedLeftSidePanel: 'studies', // TODO: Don't hardcode this
thumbnails: [],
};
retrieveMeasurements = (patientId, timepointIds) => {
OHIF.log.info('retrieveMeasurements');
// TODO: Retrieve the measurements from the latest available SR
return Promise.resolve();
};
storeMeasurements = (measurementData, timepointIds) => {
OHIF.log.info('storeMeasurements');
// TODO: Store the measurements into a new SR sent to the active server
return Promise.resolve();
};
retrieveTimepoints = filter => {
OHIF.log.info('retrieveTimepoints');
// Get the earliest and latest study date
let earliestDate = new Date().toISOString();
let latestDate = new Date().toISOString();
if (this.props.studies) {
latestDate = new Date('1000-01-01').toISOString();
this.props.studies.forEach(study => {
const studyDate = moment(study.studyDate, 'YYYYMMDD').toISOString();
if (studyDate < earliestDate) {
earliestDate = studyDate;
}
if (studyDate > latestDate) {
latestDate = studyDate;
}
});
}
// Return a generic timepoint
return Promise.resolve([
{
timepointType: 'baseline',
timepointId: 'TimepointId',
studyInstanceUids: this.props.studyInstanceUids,
patientId: filter.patientId,
earliestDate,
latestDate,
isLocked: false,
},
]);
};
storeTimepoints = timepointData => {
OHIF.log.info('storeTimepoints');
return Promise.resolve();
};
updateTimepoint = (timepointData, query) => {
OHIF.log.info('updateTimepoint');
return Promise.resolve();
};
removeTimepoint = timepointId => {
OHIF.log.info('removeTimepoint');
return Promise.resolve();
};
disassociateStudy = (timepointIds, studyInstanceUid) => {
OHIF.log.info('disassociateStudy');
return Promise.resolve();
};
onTimepointsUpdated = timepoints => {
if (this.props.onTimepointsUpdated) {
this.props.onTimepointsUpdated(timepoints);
}
};
onMeasurementsUpdated = measurements => {
if (this.props.onMeasurementsUpdated) {
this.props.onMeasurementsUpdated(measurements);
}
};
componentDidMount() {
const { studies } = this.props;
const { TimepointApi, MeasurementApi } = OHIF.measurements;
const currentTimepointId = 'TimepointId';
const timepointApi = new TimepointApi(currentTimepointId, {
onTimepointsUpdated: this.onTimepointsUpdated,
});
const measurementApi = new MeasurementApi(timepointApi, {
onMeasurementsUpdated: this.onMeasurementsUpdated,
});
this.currentTimepointId = currentTimepointId;
this.timepointApi = timepointApi;
this.measurementApi = measurementApi;
if (studies) {
const patientId = studies[0] && studies[0].patientId;
timepointApi.retrieveTimepoints({ patientId });
measurementApi.retrieveMeasurements(patientId, [currentTimepointId]);
this.setState({
thumbnails: _mapStudiesToThumbnails(studies),
});
}
}
componentDidUpdate(prevProps) {
if (this.props.studies !== prevProps.studies) {
const { studies } = this.props;
const patientId = studies[0] && studies[0].patientId;
const currentTimepointId = this.currentTimepointId;
this.timepointApi.retrieveTimepoints({ patientId });
this.measurementApi.retrieveMeasurements(patientId, [currentTimepointId]);
this.setState({
thumbnails: _mapStudiesToThumbnails(studies),
});
}
}
render() {
let VisiblePanelLeft, VisiblePanelRight;
const panelExtensions = extensionManager.modules[MODULE_TYPES.PANEL];
panelExtensions.forEach(panelExt => {
panelExt.module.components.forEach(comp => {
if (comp.id === this.state.selectedRightSidePanel) {
VisiblePanelRight = comp.component;
} else if (comp.id === this.state.selectedLeftSidePanel) {
VisiblePanelLeft = comp.component;
}
});
});
return (
<>
{/* HEADER */}
<WhiteLabellingContext.Consumer>
{whiteLabelling => (
<UserManagerContext.Consumer>
{userManager => (
<ConnectedHeader home={false} userManager={userManager}>
{whiteLabelling.logoComponent}
</ConnectedHeader>
)}
</UserManagerContext.Consumer>
)}
</WhiteLabellingContext.Consumer>
{/* TOOLBAR */}
<ConnectedToolbarRow
isLeftSidePanelOpen={this.state.isLeftSidePanelOpen}
isRightSidePanelOpen={this.state.isRightSidePanelOpen}
selectedLeftSidePanel={
this.state.isLeftSidePanelOpen
? this.state.selectedLeftSidePanel
: ''
}
selectedRightSidePanel={
this.state.isRightSidePanelOpen
? this.state.selectedRightSidePanel
: ''
}
handleSidePanelChange={(side, selectedPanel) => {
const sideClicked = side && side[0].toUpperCase() + side.slice(1);
const openKey = `is${sideClicked}SidePanelOpen`;
const selectedKey = `selected${sideClicked}SidePanel`;
const updatedState = Object.assign({}, this.state);
const isOpen = updatedState[openKey];
const prevSelectedPanel = updatedState[selectedKey];
// RoundedButtonGroup returns `null` if selected button is clicked
const isSameSelectedPanel =
prevSelectedPanel === selectedPanel || selectedPanel === null;
updatedState[selectedKey] = selectedPanel || prevSelectedPanel;
const isClosedOrShouldClose = !isOpen || isSameSelectedPanel;
if (isClosedOrShouldClose) {
updatedState[openKey] = !updatedState[openKey];
}
this.setState(updatedState);
}}
/>
{/*<ConnectedStudyLoadingMonitor studies={this.props.studies} />*/}
{/*<StudyPrefetcher studies={this.props.studies} />*/}
{/* VIEWPORTS + SIDEPANELS */}
<div className="FlexboxLayout">
{/* LEFT */}
<SidePanel from="left" isOpen={this.state.isLeftSidePanelOpen}>
{VisiblePanelLeft ? (
<VisiblePanelLeft
viewports={this.props.viewports}
activeIndex={this.props.activeViewportIndex}
/>
) : (
<ConnectedStudyBrowser studies={this.state.thumbnails} />
)}
</SidePanel>
{/* MAIN */}
<div className={classNames('main-content')}>
<ConnectedViewerMain studies={this.props.studies} />
</div>
{/* RIGHT */}
<SidePanel from="right" isOpen={this.state.isRightSidePanelOpen}>
{VisiblePanelRight && (
<VisiblePanelRight
viewports={this.props.viewports}
activeIndex={this.props.activeViewportIndex}
/>
)}
</SidePanel>
</div>
<ConnectedLabellingOverlay />
</>
);
}
}
export default Viewer;
/**
* What types are these? Why do we have "mapping" dropped in here instead of in
* a mapping layer?
*
* TODO[react]:
* - Add sorting of display sets
* - Add showStackLoadingProgressBar option
*
* @param {Study[]} studies
* @param {DisplaySet[]} studies[].displaySets
*/
const _mapStudiesToThumbnails = function(studies) {
return studies.map(study => {
const { studyInstanceUid } = study;
const thumbnails = study.displaySets.map(displaySet => {
const {
displaySetInstanceUid,
seriesDescription,
seriesNumber,
instanceNumber,
numImageFrames,
} = displaySet;
let imageId;
let altImageText;
if (displaySet.modality && displaySet.modality === 'SEG') {
// TODO: We want to replace this with a thumbnail showing
// the segmentation map on the image, but this is easier
// and better than what we have right now.
altImageText = 'SEG';
} else if (displaySet.images && displaySet.images.length) {
const imageIndex = Math.floor(displaySet.images.length / 2);
imageId = displaySet.images[imageIndex].getImageId();
} else {
altImageText = displaySet.modality ? displaySet.modality : 'UN';
}
return {
imageId,
altImageText,
displaySetInstanceUid,
seriesDescription,
seriesNumber,
instanceNumber,
numImageFrames,
};
});
return {
studyInstanceUid,
thumbnails,
};
});
};
@@ -0,0 +1,15 @@
.drag-drop-instructions {
width: 100%;
height: 100%;
display: flex;
justify-content: center;
align-items: center;
}
.drag-drop-instructions h3 {
color: var(--active-color);
}
.drag-drop-instructions h4 {
color: var(--text-secondary-color);
}
@@ -0,0 +1,117 @@
import React, { Component } from 'react';
import { metadata, utils } from '@ohif/core';
import ConnectedViewer from './ConnectedViewer.js';
import PropTypes from 'prop-types';
import { extensionManager } from './../App.js';
import Dropzone from 'react-dropzone';
import filesToStudies from '../lib/filesToStudies';
import './ViewerLocalFileData.css';
import { withTranslation } from 'react-i18next';
const { OHIFStudyMetadata } = metadata;
const { studyMetadataManager, updateMetaDataManager } = utils;
class ViewerLocalFileData extends Component {
static propTypes = {
studies: PropTypes.array,
};
state = {
studies: null,
loading: false,
error: null,
};
updateStudies = studies => {
// Render the viewer when the data is ready
studyMetadataManager.purge();
// Map studies to new format, update metadata manager?
const updatedStudies = studies.map(study => {
const studyMetadata = new OHIFStudyMetadata(
study,
study.studyInstanceUid
);
const sopClassHandlerModules =
extensionManager.modules['sopClassHandlerModule'];
study.displaySets =
study.displaySets ||
studyMetadata.createDisplaySets(sopClassHandlerModules);
studyMetadata.setDisplaySets(study.displaySets);
// Updates WADO-RS metaDataManager
updateMetaDataManager(study);
studyMetadataManager.add(studyMetadata);
return study;
});
this.setState({
studies: updatedStudies,
});
};
render() {
const onDrop = async acceptedFiles => {
this.setState({ loading: true });
const studies = await filesToStudies(acceptedFiles);
const updatedStudies = this.updateStudies(studies);
if (!updatedStudies) {
return;
}
this.setState({ studies: updatedStudies, loading: false });
};
if (this.state.error) {
return <div>Error: {JSON.stringify(this.state.error)}</div>;
}
return (
<Dropzone onDrop={onDrop}>
{({ getRootProps, getInputProps }) => (
<div {...getRootProps()} style={{ width: '100%', height: '100%' }}>
{this.state.studies ? (
<ConnectedViewer
studies={this.state.studies}
studyInstanceUids={
this.state.studies &&
this.state.studies.map(a => a.studyInstanceUid)
}
/>
) : (
<div className={'drag-drop-instructions'}>
<div className={'drag-drop-contents'}>
{this.state.loading ? (
<h3>{this.props.t('Loading...')}</h3>
) : (
<>
<h3>
{this.props.t(
'Drag and Drop DICOM files here to load them in the Viewer'
)}
</h3>
<h4>
{this.props.t(
"Or click to load the browser's file selector"
)}
</h4>
</>
)}
</div>
<input {...getInputProps()} style={{ display: 'none' }} />
</div>
)}
</div>
)}
</Dropzone>
);
}
}
export default withTranslation('Common')(ViewerLocalFileData);
@@ -0,0 +1,21 @@
#viewer {
height: calc(100% - var(--top-bar-height));
}
#viewer > .loadingTextDiv {
color: var(--text-secondary-color);
font-size: 30px;
height: 100%;
line-height: calc(100% - var(--top-bar-height));
}
.ViewerMain {
width: 100%;
height: 100%;
transition: all 0.3s ease;
}
.ViewerMain > div {
width: 100%;
height: 100%;
}
@@ -0,0 +1,182 @@
import './ViewerMain.css';
import { Component } from 'react';
import ConnectedLayoutManager from './ConnectedLayoutManager.js';
import ConnectedToolContextMenu from './ConnectedToolContextMenu.js';
import PropTypes from 'prop-types';
import React from 'react';
class ViewerMain extends Component {
static propTypes = {
activeViewportIndex: PropTypes.number.isRequired,
studies: PropTypes.array,
viewportSpecificData: PropTypes.object.isRequired,
layout: PropTypes.object.isRequired,
setViewportSpecificData: PropTypes.func.isRequired,
clearViewportSpecificData: PropTypes.func.isRequired,
};
constructor(props) {
super(props);
this.state = {
displaySets: [],
};
this.cachedViewportData = {};
}
getDisplaySets(studies) {
const displaySets = [];
studies.forEach(study => {
study.displaySets.forEach(dSet => {
if (!dSet.plugin) {
dSet.plugin = 'cornerstone';
}
displaySets.push(dSet);
});
});
return displaySets;
}
findDisplaySet(studies, studyInstanceUid, displaySetInstanceUid) {
const study = studies.find(study => {
return study.studyInstanceUid === studyInstanceUid;
});
if (!study) {
return;
}
return study.displaySets.find(displaySet => {
return displaySet.displaySetInstanceUid === displaySetInstanceUid;
});
}
componentDidMount() {
// Add beforeUnload event handler to check for unsaved changes
//window.addEventListener('beforeunload', unloadHandlers.beforeUnload);
// Get all the display sets for the viewer studies
if (this.props.studies) {
const displaySets = this.getDisplaySets(this.props.studies);
this.setState({
displaySets,
});
}
}
componentDidUpdate(prevProps) {
if (this.props.studies !== prevProps.studies) {
const displaySets = this.getDisplaySets(this.props.studies);
this.setState({
displaySets,
});
}
}
getViewportData = () => {
const viewportData = [];
const { layout, viewportSpecificData } = this.props;
for (
let viewportIndex = 0;
viewportIndex < layout.viewports.length;
viewportIndex++
) {
let displaySet = viewportSpecificData[viewportIndex];
// Use the cached display set in viewport if the new one is empty
if (displaySet && !displaySet.displaySetInstanceUid) {
displaySet = this.cachedViewportData[viewportIndex];
}
if (
displaySet &&
displaySet.studyInstanceUid &&
displaySet.displaySetInstanceUid
) {
// Get missing fields from original display set
const originalDisplaySet = this.findDisplaySet(
this.props.studies,
displaySet.studyInstanceUid,
displaySet.displaySetInstanceUid
);
viewportData.push(Object.assign({}, originalDisplaySet, displaySet));
} else {
// If the viewport is empty, get one available in study
const { displaySets } = this.state;
displaySet = displaySets.find(
ds =>
!viewportData.some(
v => v.displaySetInstanceUid === ds.displaySetInstanceUid
)
);
viewportData.push(Object.assign({}, displaySet));
}
}
this.cachedViewportData = viewportData;
return viewportData;
};
setViewportData = ({ viewportIndex, item }) => {
const displaySet = this.findDisplaySet(
this.props.studies,
item.studyInstanceUid,
item.displaySetInstanceUid
);
this.props.setViewportSpecificData(viewportIndex, displaySet);
};
render() {
return (
<div className="ViewerMain">
{this.state.displaySets.length && (
<ConnectedLayoutManager
studies={this.props.studies}
viewportData={this.getViewportData()}
setViewportData={this.setViewportData}
>
{/* Children to add to each viewport that support children */}
<ConnectedToolContextMenu />
</ConnectedLayoutManager>
)}
</div>
);
}
componentWillUnmount() {
// Clear the entire viewport specific data
const { viewportSpecificData } = this.props;
Object.keys(viewportSpecificData).forEach(viewportIndex => {
this.props.clearViewportSpecificData(viewportIndex);
});
// TODO: These don't have to be viewer specific?
// Could qualify for other routes?
// hotkeys.destroy();
// Remove beforeUnload event handler...
//window.removeEventListener('beforeunload', unloadHandlers.beforeUnload);
// Destroy the synchronizer used to update reference lines
//OHIF.viewer.updateImageSynchronizer.destroy();
// TODO: Instruct all plugins to clean up themselves
//
// Clear references to all stacks in the StackManager
//StackManager.clearStacks();
// @TypeSafeStudies
// Clears OHIF.viewer.Studies collection
//OHIF.viewer.Studies.removeAll();
// @TypeSafeStudies
// Clears OHIF.viewer.StudyMetadataList collection
//OHIF.viewer.StudyMetadataList.removeAll();
}
}
export default ViewerMain;
@@ -0,0 +1,89 @@
import React, { Component } from "react";
import { metadata, studies, utils } from "@ohif/core";
import ConnectedViewer from "./ConnectedViewer.js";
import PropTypes from "prop-types";
import { extensionManager } from "./../App.js";
const { OHIFStudyMetadata } = metadata;
const { retrieveStudiesMetadata } = studies;
const { studyMetadataManager, updateMetaDataManager } = utils;
class ViewerRetrieveStudyData extends Component {
static propTypes = {
studyInstanceUids: PropTypes.array.isRequired,
seriesInstanceUids: PropTypes.array,
server: PropTypes.object
};
state = {
studies: null,
error: null
};
async componentDidMount() {
// TODO: Avoid using timepoints here
//const params = { studyInstanceUids, seriesInstanceUids, timepointId, timepointsFilter={} };
const { studyInstanceUids, seriesInstanceUids, server } = this.props;
try {
const studies = await retrieveStudiesMetadata(
server,
studyInstanceUids,
seriesInstanceUids
);
// Render the viewer when the data is ready
// TODO: CLEAR THIS SOMEWHERE ELSE
studyMetadataManager.purge();
// Map studies to new format, update metadata manager?
const updatedStudies = studies.map(study => {
const studyMetadata = new OHIFStudyMetadata(
study,
study.studyInstanceUid
);
const sopClassHandlerModules =
extensionManager.modules["sopClassHandlerModule"];
study.displaySets =
study.displaySets ||
studyMetadata.createDisplaySets(sopClassHandlerModules);
studyMetadata.setDisplaySets(study.displaySets);
// Updates WADO-RS metaDataManager
updateMetaDataManager(study);
studyMetadataManager.add(studyMetadata);
return study;
});
this.setState({
studies: updatedStudies
});
} catch (err) {
this.setState({
error: true
});
// TODO: Handle gracefully instead of throwing?
throw new Error(err);
}
}
render() {
if (this.state.error) {
return <div>Error: {JSON.stringify(this.state.error)}</div>;
}
return (
<ConnectedViewer
studies={this.state.studies}
studyInstanceUids={this.props.studyInstanceUids}
/>
);
}
}
export default ViewerRetrieveStudyData;