chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272)
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Erik Ziegler authored and GitHub committed
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@@ -41,15 +41,12 @@
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"prop-types": "^15.6.2",
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"react": "^16.11.0",
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"react-dom": "^16.11.0",
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"react-redux": "^6.0.0",
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"react-resize-detector": "^3.4.0",
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"redux": "^4.0.1"
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"react-resize-detector": "^3.4.0"
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},
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"dependencies": {
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"@babel/runtime": "7.7.6",
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"classnames": "^2.2.6",
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"lodash.merge": "^4.6.2",
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"lodash.throttle": "^4.1.1",
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"lodash.debounce": "4.0.8",
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"react-cornerstone-viewport": "4.0.2"
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}
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}
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@@ -7,6 +7,9 @@ import OHIF from '@ohif/core';
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const { log } = OHIF;
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export default function(configuration = {}) {
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// TODO: Cypress tests are currently grabbing this from the window?
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window.cornerstone = cornerstone;
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// For debugging
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window.cornerstoneTools = cornerstoneTools;
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+23
-7
@@ -11,6 +11,7 @@ jest.mock('cornerstone-core', () => ({
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SOPInstanceUID: '123',
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FrameOfReferenceUID: '123',
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SeriesInstanceUID: '123',
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StudyInstanceUID: '1234',
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}),
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},
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}));
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@@ -22,6 +23,7 @@ describe('measurementServiceMappings.js', () => {
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let csToolsAnnotation;
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let measurement;
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let measurementServiceMock;
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let displaySetServiceMock;
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let definition = 'Length';
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beforeEach(() => {
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@@ -34,7 +36,16 @@ describe('measurementServiceMappings.js', () => {
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CIRCLE: 'value_type::circle',
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},
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};
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mappings = measurementServiceMappingsFactory(measurementServiceMock);
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displaySetServiceMock = {
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getDisplaySetForSOPInstanceUID: (SOPInstanceUID, SeriesInstanceUID) => {
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console.warn('SOPInstanceUID');
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return {
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displaySetInstanceUID: '1.2.3.4'
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}
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}
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};
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mappings = measurementServiceMappingsFactory(measurementServiceMock, displaySetServiceMock);
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handles = { start: { x: 1, y: 2 }, end: { x: 1, y: 2 } };
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points = [
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{ x: 1, y: 2 },
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@@ -43,7 +54,8 @@ describe('measurementServiceMappings.js', () => {
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csToolsAnnotation = {
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toolName: definition,
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measurementData: {
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_measurementServiceId: 1,
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id: 1,
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label: 'Test',
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SOPInstanceUID: '123',
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FrameOfReferenceUID: '123',
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SeriesInstanceUID: '123',
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@@ -51,6 +63,7 @@ describe('measurementServiceMappings.js', () => {
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text: 'Test',
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description: 'Test',
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unit: 'mm',
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length: undefined
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},
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};
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measurement = {
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@@ -58,28 +71,31 @@ describe('measurementServiceMappings.js', () => {
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SOPInstanceUID: '123',
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FrameOfReferenceUID: '123',
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referenceSeriesUID: '123',
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referenceStudyUID: '1234',
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displaySetInstanceUID: '1.2.3.4',
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label: 'Test',
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description: 'Test',
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unit: 'mm',
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type: measurementServiceMock.VALUE_TYPES.POLYLINE,
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points: points,
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points,
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};
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jest.clearAllMocks();
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});
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describe('toAnnotation()', () => {
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/*describe('toAnnotation()', () => {
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it('map measurement service format to annotation', async () => {
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const mappedMeasurement = await mappings.toAnnotation(
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const mappedMeasurement = await mappings[csToolsAnnotation.toolName].toAnnotation(
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measurement,
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definition
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);
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expect(mappedMeasurement).toEqual(csToolsAnnotation);
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});
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});
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});*/
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describe('toMeasurement()', () => {
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it('map annotation to measurement service format', async () => {
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const mappedAnnotation = await mappings.toMeasurement(csToolsAnnotation);
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const getValueTypeFromToolType = (toolType) => 'valueType';
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const mappedAnnotation = await mappings[csToolsAnnotation.toolName].toMeasurement(csToolsAnnotation, displaySetServiceMock, getValueTypeFromToolType);
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expect(mappedAnnotation).toEqual(measurement);
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});
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});
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@@ -29,12 +29,14 @@
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"peerDependencies": {
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"@ohif/core": "^0.50.0",
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"@ohif/i18n": "^0.52.8",
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"react-i18next": "^10.11.0",
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"dcmjs": "0.16.1",
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"dicomweb-client": "^0.6.0",
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"prop-types": "^15.6.2",
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"react": "^16.13.1",
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"react-dom": "^16.13.1",
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"react-i18next": "^10.11.0",
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"webpack": "^4.0.0",
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"dcmjs": "0.16.1"
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"webpack-merge": "^5.7.3"
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},
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"dependencies": {
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"@babel/runtime": "7.7.6"
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@@ -10,7 +10,7 @@ import dcm4cheeReject from './dcm4cheeReject';
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import { DicomMetadataStore, IWebApiDataSource, utils } from '@ohif/core';
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import getImageId from './utils/getImageId';
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import * as dcmjs from 'dcmjs';
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import dcmjs from 'dcmjs';
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import {
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retrieveStudyMetadata,
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deleteStudyMetadataPromise,
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@@ -170,7 +170,8 @@ function mapParams(params, options = {}) {
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const parameters = {
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// Named
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PatientName: withWildcard(params.patientName),
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PatientID: withWildcard(params.patientId),
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//PatientID: withWildcard(params.patientId),
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"00100020": withWildcard(params.patientId), // Temporarily to make the tests pass with dicomweb-server.. Apparently it's broken?
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AccessionNumber: withWildcard(params.accessionNumber),
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StudyDescription: withWildcard(params.studyDescription),
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ModalitiesInStudy: params.modalitiesInStudy,
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@@ -43,20 +43,16 @@ export default function PanelMeasurementTable({
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};
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}, [MeasurementService]);
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// const activeMeasurementItem = 0;
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return (
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<>
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<div className="overflow-x-hidden overflow-y-auto invisible-scrollbar">
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<MeasurementTable
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title="Measurements"
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amount={displayMeasurements.length}
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data={displayMeasurements}
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onClick={({ id }) => alert(`Click: ${id}`)}
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onEdit={({ id }) => alert(`Edit: ${id}`)}
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/>
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</div>
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</>
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<div className="overflow-x-hidden overflow-y-auto invisible-scrollbar">
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<MeasurementTable
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title="Measurements"
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amount={displayMeasurements.length}
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data={displayMeasurements}
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onClick={({ id }) => alert(`Click: ${id}`)}
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onEdit={({ id }) => alert(`Edit: ${id}`)}
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/>
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</div>
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);
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}
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@@ -48,7 +48,7 @@ function LayoutSelector() {
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)
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}
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isActive={isOpen}
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type="primary"
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type="toggle"
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/>
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);
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}
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@@ -1,5 +1,4 @@
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import React, { useState } from 'react';
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import { ViewModelContext } from '@ohif/core';
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const HelloWorldContext = React.createContext({
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message: 'HelloWorldContextTesting',
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@@ -1,8 +0,0 @@
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const path = require('path');
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const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
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const SRC_DIR = path.join(__dirname, '../src');
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const DIST_DIR = path.join(__dirname, '../dist');
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module.exports = (env, argv) => {
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return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
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};
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@@ -1,44 +0,0 @@
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const webpack = require('webpack');
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const merge = require('webpack-merge');
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const path = require('path');
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const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
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const pkg = require('./../package.json');
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const ROOT_DIR = path.join(__dirname, './..');
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const SRC_DIR = path.join(__dirname, '../src');
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const DIST_DIR = path.join(__dirname, '../dist');
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module.exports = (env, argv) => {
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const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
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return merge(commonConfig, {
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devtool: 'source-map',
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stats: {
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colors: true,
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hash: true,
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timings: true,
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assets: true,
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chunks: false,
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chunkModules: false,
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modules: false,
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children: false,
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warnings: true,
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},
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optimization: {
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minimize: true,
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sideEffects: true,
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},
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output: {
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path: ROOT_DIR,
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library: 'OHIFExtDicomHtml',
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libraryTarget: 'umd',
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libraryExport: 'default',
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filename: pkg.main,
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},
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plugins: [
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new webpack.optimize.LimitChunkCountPlugin({
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maxChunks: 1,
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}),
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],
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});
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};
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@@ -1,258 +0,0 @@
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# Change Log
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All notable changes to this project will be documented in this file.
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See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
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## [1.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.1...@ohif/extension-dicom-html@1.2.2) (2020-05-04)
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### Bug Fixes
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* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
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## [1.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.0...@ohif/extension-dicom-html@1.2.1) (2020-04-28)
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**Note:** Version bump only for package @ohif/extension-dicom-html
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# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.1.2...@ohif/extension-dicom-html@1.2.0) (2020-04-24)
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### Features
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* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
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## [1.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.1.1...@ohif/extension-dicom-html@1.1.2) (2020-04-02)
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**Note:** Version bump only for package @ohif/extension-dicom-html
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## [1.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.1.0...@ohif/extension-dicom-html@1.1.1) (2020-03-09)
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**Note:** Version bump only for package @ohif/extension-dicom-html
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# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.0.2...@ohif/extension-dicom-html@1.1.0) (2019-12-11)
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### Features
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* 🎸 DICOM SR STOW on MeasurementAPI ([#954](https://github.com/OHIF/Viewers/issues/954)) ([ebe1af8](https://github.com/OHIF/Viewers/commit/ebe1af8d4f75d2483eba869655906d7829bd9666)), closes [#758](https://github.com/OHIF/Viewers/issues/758)
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## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.0.1...@ohif/extension-dicom-html@1.0.2) (2019-12-02)
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**Note:** Version bump only for package @ohif/extension-dicom-html
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## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.0.0...@ohif/extension-dicom-html@1.0.1) (2019-10-29)
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### Bug Fixes
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* Set SR viewport as active by interaction ([#1118](https://github.com/OHIF/Viewers/issues/1118)) ([5b33417](https://github.com/OHIF/Viewers/commit/5b334175c370afb930b4b6dbd307ddece8f850e3))
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# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.8...@ohif/extension-dicom-html@1.0.0) (2019-09-27)
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### Bug Fixes
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* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
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### BREAKING CHANGES
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* DICOM Seg
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## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.7...@ohif/extension-dicom-html@0.50.8) (2019-09-26)
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### Bug Fixes
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* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
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## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.6...@ohif/extension-dicom-html@0.50.7) (2019-09-12)
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**Note:** Version bump only for package @ohif/extension-dicom-html
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## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.5...@ohif/extension-dicom-html@0.50.6) (2019-09-10)
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### Bug Fixes
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* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
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## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.4...@ohif/extension-dicom-html@0.50.5) (2019-09-09)
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|
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**Note:** Version bump only for package @ohif/extension-dicom-html
|
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## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.3...@ohif/extension-dicom-html@0.50.4) (2019-09-06)
|
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||||
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### Bug Fixes
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* set NODE_ENV for production build ([9120db4](https://github.com/OHIF/Viewers/commit/9120db4))
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||||
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||||
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||||
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||||
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||||
## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.2...@ohif/extension-dicom-html@0.50.3) (2019-09-04)
|
||||
|
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**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
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||||
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||||
|
||||
|
||||
|
||||
## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.1...@ohif/extension-dicom-html@0.50.2) (2019-09-04)
|
||||
|
||||
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||||
### Bug Fixes
|
||||
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||||
* measurementsAPI issue caused by production build ([#842](https://github.com/OHIF/Viewers/issues/842)) ([49d3439](https://github.com/OHIF/Viewers/commit/49d3439))
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||||
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||||
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||||
## [0.50.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.0-alpha.10...@ohif/extension-dicom-html@0.50.1) (2019-08-14)
|
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|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
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||||
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|
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||||
# [0.50.0-alpha.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.9...@ohif/extension-dicom-html@0.50.0-alpha.10) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
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||||
|
||||
|
||||
|
||||
|
||||
## [0.0.4-alpha.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.8...@ohif/extension-dicom-html@0.0.4-alpha.9) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
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||||
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## 0.0.4-alpha.8 (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.6...@ohif/extension-dicom-html@0.0.4-alpha.7) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.5...@ohif/extension-dicom-html@0.0.4-alpha.6) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.4...@ohif/extension-dicom-html@0.0.4-alpha.5) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.3...@ohif/extension-dicom-html@0.0.4-alpha.4) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.2...@ohif/extension-dicom-html@0.0.4-alpha.3) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.4-alpha.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.1...@ohif/extension-dicom-html@0.0.4-alpha.2) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
## [0.0.4-alpha.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.0.4-alpha.0...@ohif/extension-dicom-html@0.0.4-alpha.1) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
## 0.0.4-alpha.0 (2019-08-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
@@ -1,21 +0,0 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -1 +0,0 @@
|
||||
# @ohif/extension-dicom-html
|
||||
@@ -1 +0,0 @@
|
||||
:root{--text-color-primary:#fff}.DicomHtmlViewport{padding:20px;overflow-y:scroll;width:100%;height:100%;color:#fff;color:var(--text-color-primary)}
|
||||
@@ -1,39 +0,0 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.2.2",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"dev:dicom-html": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "0.16.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.11.0",
|
||||
"react-dom": "^16.11.0"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.7.6"
|
||||
}
|
||||
}
|
||||
@@ -1,33 +0,0 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { connect } from 'react-redux';
|
||||
import DicomHtmlViewport from './DicomHtmlViewport';
|
||||
|
||||
const { setViewportActive } = OHIF.redux.actions;
|
||||
|
||||
const mapStateToProps = (state, ownProps) => {
|
||||
const { viewportIndex, byteArray } = ownProps;
|
||||
const { activeViewportIndex } = state.viewports;
|
||||
|
||||
return {
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
byteArray,
|
||||
};
|
||||
};
|
||||
|
||||
const mapDispatchToProps = (dispatch, ownProps) => {
|
||||
const { viewportIndex } = ownProps;
|
||||
|
||||
return {
|
||||
setViewportActive: () => {
|
||||
dispatch(setViewportActive(viewportIndex));
|
||||
},
|
||||
};
|
||||
};
|
||||
|
||||
const ConnectedDicomHtmlViewport = connect(
|
||||
mapStateToProps,
|
||||
mapDispatchToProps
|
||||
)(DicomHtmlViewport);
|
||||
|
||||
export default ConnectedDicomHtmlViewport;
|
||||
@@ -1,11 +0,0 @@
|
||||
:root {
|
||||
--text-color-primary: white;
|
||||
}
|
||||
|
||||
.DicomHtmlViewport {
|
||||
padding: 20px;
|
||||
overflow-y: scroll;
|
||||
width: 100%;
|
||||
height: 100%;
|
||||
color: var(--text-color-primary);
|
||||
}
|
||||
@@ -1,262 +0,0 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import dcmjs from 'dcmjs';
|
||||
import TypedArrayProp from './TypedArrayProp';
|
||||
|
||||
import './DicomHtmlViewport.css';
|
||||
|
||||
function getRelationshipString(data) {
|
||||
switch (data.RelationshipType) {
|
||||
case 'HAS CONCEPT MOD':
|
||||
return 'Concept modifier: ';
|
||||
case 'HAS OBS CONTEXT':
|
||||
return 'Observation context: ';
|
||||
default:
|
||||
return '';
|
||||
}
|
||||
}
|
||||
|
||||
const getMeaningString = data => {
|
||||
if (data.ConceptNameCodeSequence) {
|
||||
const { CodeMeaning } = data.ConceptNameCodeSequence;
|
||||
|
||||
return `${CodeMeaning} = `;
|
||||
}
|
||||
|
||||
return '';
|
||||
};
|
||||
|
||||
function getValueString(data) {
|
||||
switch (data.ValueType) {
|
||||
case 'CODE':
|
||||
const {
|
||||
CodeMeaning,
|
||||
CodeValue,
|
||||
CodingSchemeDesignator,
|
||||
} = data.ConceptNameCodeSequence;
|
||||
|
||||
return `${CodeMeaning} (${CodeValue}, ${CodingSchemeDesignator})`;
|
||||
|
||||
case 'PNAME':
|
||||
return data.PersonName;
|
||||
|
||||
case 'TEXT':
|
||||
return data.TextValue;
|
||||
|
||||
case 'UIDREF':
|
||||
return data.UID;
|
||||
|
||||
case 'NUM':
|
||||
const { MeasuredValueSequence } = data;
|
||||
const numValue = MeasuredValueSequence.NumericValue;
|
||||
const codeValue =
|
||||
MeasuredValueSequence.MeasurementUnitsCodeSequence.CodeValue;
|
||||
return `${numValue} ${codeValue}`;
|
||||
}
|
||||
}
|
||||
|
||||
function constructPlainValue(data) {
|
||||
const value = getValueString(data);
|
||||
|
||||
if (value) {
|
||||
return getRelationshipString(data) + getMeaningString(data) + value;
|
||||
}
|
||||
}
|
||||
|
||||
function constructContentSequence(data, header) {
|
||||
if (!data.ContentSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
const items = data.ContentSequence.map(item => parseContent(item)).filter(
|
||||
item => item
|
||||
);
|
||||
|
||||
if (!items.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const result = {
|
||||
items,
|
||||
};
|
||||
|
||||
if (header) {
|
||||
result.header = header;
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
function parseContent(data) {
|
||||
if (data.ValueType) {
|
||||
if (data.ValueType === 'CONTAINER') {
|
||||
const header = data.ConceptNameCodeSequence.CodeMeaning;
|
||||
|
||||
return constructContentSequence(data, header);
|
||||
}
|
||||
|
||||
return constructPlainValue(data);
|
||||
}
|
||||
|
||||
if (data.ContentSequence) {
|
||||
return constructContentSequence(data);
|
||||
}
|
||||
}
|
||||
|
||||
const { DicomMetaDictionary, DicomMessage } = dcmjs.data;
|
||||
|
||||
function getMainData(data) {
|
||||
const root = [];
|
||||
|
||||
const patientValue = `${data.PatientName} (${data.PatientSex}, #${data.PatientID})`;
|
||||
root.push(getMainDataItem('Patient', patientValue));
|
||||
|
||||
const studyValue = data.StudyDescription;
|
||||
root.push(getMainDataItem('Study', studyValue));
|
||||
|
||||
const seriesValue = `${data.SeriesDescription} (#${data.SeriesNumber})`;
|
||||
root.push(getMainDataItem('Series', seriesValue));
|
||||
|
||||
const manufacturerValue = `${data.Manufacturer} (${data.ManufacturerModelName}, #${data.DeviceSerialNumber})`;
|
||||
|
||||
root.push(getMainDataItem('Manufacturer', manufacturerValue));
|
||||
|
||||
const mainDataObjects = {
|
||||
CompletionFlag: 'Completion flag',
|
||||
VerificationFlag: 'Verification flag',
|
||||
};
|
||||
|
||||
Object.keys(mainDataObjects).forEach(key => {
|
||||
if (!data[key]) {
|
||||
return;
|
||||
}
|
||||
|
||||
const item = getMainDataItem(mainDataObjects[key], data[key]);
|
||||
|
||||
root.push(item);
|
||||
});
|
||||
|
||||
// TODO: Format these dates
|
||||
const contentDateTimeValue = `${data.ContentDate} ${data.ContentTime}`;
|
||||
root.push(getMainDataItem('Content Date/Time', contentDateTimeValue));
|
||||
|
||||
root.push();
|
||||
|
||||
return <div>{root}</div>;
|
||||
}
|
||||
|
||||
const getContentSequence = (data, level = 1) => {
|
||||
let header;
|
||||
|
||||
if (data.ConceptNameCodeSequence) {
|
||||
const {
|
||||
CodeMeaning,
|
||||
CodeValue,
|
||||
CodingSchemeDesignator,
|
||||
} = data.ConceptNameCodeSequence;
|
||||
|
||||
header = `${CodeMeaning} (${CodeValue} - ${CodingSchemeDesignator})`;
|
||||
}
|
||||
|
||||
const root = [];
|
||||
if (header) {
|
||||
const HeaderDynamicLevel = `h${level}`;
|
||||
|
||||
root.push(<HeaderDynamicLevel key={header}>{header}</HeaderDynamicLevel>);
|
||||
}
|
||||
|
||||
Object.keys(data).forEach(key => {
|
||||
const value = data[key];
|
||||
|
||||
let content;
|
||||
if (value instanceof Object) {
|
||||
content = getContentSequence(value, level + 1);
|
||||
} else {
|
||||
content = (
|
||||
<div key={key}>
|
||||
{key} - {data[key]}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
root.push(content);
|
||||
});
|
||||
|
||||
return <div>{root}</div>;
|
||||
};
|
||||
|
||||
function getMainDataItem(key, value) {
|
||||
return (
|
||||
<div key={key}>
|
||||
<b>{key}</b>: {value}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
class DicomHtmlViewport extends Component {
|
||||
state = {
|
||||
content: null,
|
||||
error: null,
|
||||
};
|
||||
|
||||
static propTypes = {
|
||||
byteArray: TypedArrayProp.uint8,
|
||||
setViewportActive: PropTypes.func.isRequired,
|
||||
viewportIndex: PropTypes.number.isRequired,
|
||||
activeViewportIndex: PropTypes.number.isRequired,
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
const dataSet = this.setContentFromByteArray(this.props.byteArray);
|
||||
}
|
||||
|
||||
setContentFromByteArray(byteArray) {
|
||||
const arrayBuffer = byteArray.buffer;
|
||||
const dicomData = DicomMessage.readFile(arrayBuffer);
|
||||
const dataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
|
||||
dataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
|
||||
const mainData = getMainData(dataset);
|
||||
const contentSequence = getContentSequence(dataset);
|
||||
const content = (
|
||||
<>
|
||||
{mainData}
|
||||
{contentSequence}
|
||||
</>
|
||||
);
|
||||
|
||||
this.setState({
|
||||
content,
|
||||
});
|
||||
}
|
||||
|
||||
setViewportActiveHandler = () => {
|
||||
const {
|
||||
setViewportActive,
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
} = this.props;
|
||||
|
||||
if (viewportIndex !== activeViewportIndex) {
|
||||
setViewportActive(viewportIndex);
|
||||
}
|
||||
};
|
||||
|
||||
render() {
|
||||
const { content, error } = this.state;
|
||||
|
||||
return (
|
||||
<div
|
||||
data-cy="dicom-html-viewport"
|
||||
className="DicomHtmlViewport"
|
||||
onClick={this.setViewportActiveHandler}
|
||||
onScroll={this.setViewportActiveHandler}
|
||||
>
|
||||
{content}
|
||||
{error && <h2>{JSON.stringify(error)}</h2>}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
export default DicomHtmlViewport;
|
||||
@@ -1,39 +0,0 @@
|
||||
import { MODULE_TYPES, utils } from '@ohif/core';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
BASIC_TEXT_SR: '1.2.840.10008.5.1.4.1.1.88.11',
|
||||
ENHANCED_SR: '1.2.840.10008.5.1.4.1.1.88.22',
|
||||
COMPREHENSIVE_SR: '1.2.840.10008.5.1.4.1.1.88.33',
|
||||
PROCEDURE_LOG_STORAGE: '1.2.840.10008.5.1.4.1.1.88.40',
|
||||
MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
|
||||
CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
|
||||
X_RAY_RADIATION_DOSE_SR: '1.2.840.10008.5.1.4.1.1.88.67',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
// TODO: Handle the case where there is more than one SOP Class Handler for the
|
||||
// same SOP Class
|
||||
const OHIFDicomHtmlSopClassHandler = {
|
||||
id: 'OHIFDicomHtmlSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient, authorizationHeaders) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
return {
|
||||
plugin: 'html',
|
||||
Modality: 'SR',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
authorizationHeaders,
|
||||
};
|
||||
},
|
||||
};
|
||||
|
||||
export default OHIFDicomHtmlSopClassHandler;
|
||||
@@ -1,56 +0,0 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import OHIF from '@ohif/core';
|
||||
import ConnectedDicomHtmlViewport from './ConnectedDicomHtmlViewport';
|
||||
|
||||
const { DicomLoaderService } = OHIF.utils;
|
||||
|
||||
class OHIFDicomHtmlViewport extends Component {
|
||||
static propTypes = {
|
||||
studies: PropTypes.object,
|
||||
displaySet: PropTypes.object,
|
||||
viewportIndex: PropTypes.number,
|
||||
viewportData: PropTypes.object,
|
||||
};
|
||||
|
||||
state = {
|
||||
byteArray: null,
|
||||
error: null,
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
const { displaySet, studies } = this.props.viewportData;
|
||||
|
||||
DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
|
||||
data => {
|
||||
const byteArray = new Uint8Array(data);
|
||||
this.setState({
|
||||
byteArray: byteArray,
|
||||
});
|
||||
},
|
||||
error => {
|
||||
this.setState({
|
||||
error,
|
||||
});
|
||||
|
||||
throw new Error(error);
|
||||
}
|
||||
);
|
||||
}
|
||||
|
||||
render() {
|
||||
return (
|
||||
<>
|
||||
{this.state.byteArray && (
|
||||
<ConnectedDicomHtmlViewport
|
||||
byteArray={this.state.byteArray}
|
||||
viewportIndex={this.props.viewportIndex}
|
||||
/>
|
||||
)}
|
||||
{this.state.error && <h2>{JSON.stringify(this.state.error)}</h2>}
|
||||
</>
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
export default OHIFDicomHtmlViewport;
|
||||
@@ -1,205 +0,0 @@
|
||||
// https://github.com/facebook/prop-types/issues/69
|
||||
|
||||
export const TypedArrayProp = {
|
||||
any: (props, propName, componentName) => {
|
||||
let obj = props[propName];
|
||||
if (
|
||||
!(
|
||||
obj instanceof Float64Array ||
|
||||
obj instanceof Float32Array ||
|
||||
obj instanceof Int32Array ||
|
||||
obj instanceof Int16Array ||
|
||||
obj instanceof Int8Array ||
|
||||
obj instanceof Uint32Array ||
|
||||
obj instanceof Uint16Array ||
|
||||
obj instanceof Uint8Array ||
|
||||
obj instanceof Uint8ClampedArray
|
||||
)
|
||||
) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a typed array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float64: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Float64Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Float64Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Float32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Float32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float: (props, propName, componentName) => {
|
||||
if (
|
||||
!(
|
||||
props[propName] instanceof Float64Array ||
|
||||
props[propName] instanceof Float32Array
|
||||
)
|
||||
) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Float32Array or Float64Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected an Int32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int16: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int16Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected an In16Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int8: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int8Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected an Int8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int: (props, propName, componentName) => {
|
||||
if (
|
||||
!(
|
||||
props[propName] instanceof Int32Array ||
|
||||
props[propName] instanceof Int16Array ||
|
||||
props[propName] instanceof Int8Array
|
||||
)
|
||||
) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected an Int32Array, In16Array, or Int8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Uint32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint16: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint16Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Uint16Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint8: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint8Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Uint8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint8clamped: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint8ClampedArray)) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Uint8ClampedArray.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint: (props, propName, componentName) => {
|
||||
if (
|
||||
!(
|
||||
props[propName] instanceof Uint32Array ||
|
||||
props[propName] instanceof Uint16Array ||
|
||||
props[propName] instanceof Uint8Array ||
|
||||
props[propName] instanceof Uint8ClampedArray
|
||||
)
|
||||
) {
|
||||
return new Error(
|
||||
'Invalid prop `' +
|
||||
propName +
|
||||
'` supplied to' +
|
||||
' `' +
|
||||
componentName +
|
||||
'`. Expected a Uint32Array, Uint16Array, Uint8Array, or Uint8ClampedArray.'
|
||||
);
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
export { TypedArrayProp as default };
|
||||
@@ -1,28 +0,0 @@
|
||||
import React from 'react';
|
||||
import OHIFDicomHtmlSopClassHandler from './OHIFDicomHtmlSopClassHandler.js';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./OHIFDicomHtmlViewport');
|
||||
});
|
||||
|
||||
const OHIFDicomHtmlViewport = props => {
|
||||
return (
|
||||
<React.Suspense fallback={<div>Loading...</div>}>
|
||||
<Component {...props} />
|
||||
</React.Suspense>
|
||||
);
|
||||
};
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'html',
|
||||
|
||||
getViewportModule() {
|
||||
return OHIFDicomHtmlViewport;
|
||||
},
|
||||
getSopClassHandlerModule() {
|
||||
return OHIFDicomHtmlSopClassHandler;
|
||||
},
|
||||
};
|
||||
@@ -1,8 +0,0 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -1,44 +0,0 @@
|
||||
const webpack = require('webpack');
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomMicroscopy',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
plugins: [
|
||||
new webpack.optimize.LimitChunkCountPlugin({
|
||||
maxChunks: 1
|
||||
})
|
||||
]
|
||||
});
|
||||
};
|
||||
@@ -1,174 +0,0 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.50.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.8...@ohif/extension-dicom-microscopy@0.50.9) (2020-04-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.7...@ohif/extension-dicom-microscopy@0.50.8) (2020-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.6...@ohif/extension-dicom-microscopy@0.50.7) (2020-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.5...@ohif/extension-dicom-microscopy@0.50.6) (2019-09-26)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.4...@ohif/extension-dicom-microscopy@0.50.5) (2019-09-10)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.3...@ohif/extension-dicom-microscopy@0.50.4) (2019-09-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.2...@ohif/extension-dicom-microscopy@0.50.3) (2019-09-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* measurementsAPI issue caused by production build ([#842](https://github.com/OHIF/Viewers/issues/842)) ([49d3439](https://github.com/OHIF/Viewers/commit/49d3439))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.1...@ohif/extension-dicom-microscopy@0.50.2) (2019-09-03)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-microscopy:** Update dicom-microscopy-viewer to 0.6.1 to fix Google Cloud usage with WSI images ([#843](https://github.com/OHIF/Viewers/issues/843)) ([dbaf5c5](https://github.com/OHIF/Viewers/commit/dbaf5c5))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.0-alpha.10...@ohif/extension-dicom-microscopy@0.50.1) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.50.0-alpha.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.9...@ohif/extension-dicom-microscopy@0.50.0-alpha.10) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.0.9-alpha.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.8...@ohif/extension-dicom-microscopy@0.0.9-alpha.9) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.0.9-alpha.8 (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.6...@ohif/extension-dicom-microscopy@0.0.9-alpha.7) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.5...@ohif/extension-dicom-microscopy@0.0.9-alpha.6) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.4...@ohif/extension-dicom-microscopy@0.0.9-alpha.5) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.3...@ohif/extension-dicom-microscopy@0.0.9-alpha.4) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.2...@ohif/extension-dicom-microscopy@0.0.9-alpha.3) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.9-alpha.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.1...@ohif/extension-dicom-microscopy@0.0.9-alpha.2) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
## [0.0.9-alpha.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.0.9-alpha.0...@ohif/extension-dicom-microscopy@0.0.9-alpha.1) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
## 0.0.9-alpha.0 (2019-08-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
@@ -1,21 +0,0 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -1,34 +0,0 @@
|
||||
# @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
<!-- TODO: Simple image or GIF? -->
|
||||
|
||||
#### Index
|
||||
|
||||
Extension Id: `microscopy`
|
||||
|
||||
- [SopClassHandler Module](#sopclasshandler-module)
|
||||
- [Viewport Module](#viewport-module)
|
||||
|
||||
## SopClassHandler Module
|
||||
|
||||
..
|
||||
|
||||
## Viewport Module
|
||||
|
||||
...
|
||||
|
||||
## Resources
|
||||
|
||||
### Repositories
|
||||
|
||||
...
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,39 +0,0 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-microscopy",
|
||||
"version": "0.50.9",
|
||||
"description": "OHIF extension for Dicom Microscopy",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"dev:dicom-microscopy": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"react": "^16.11.0",
|
||||
"react-dom": "^16.11.0"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.7.6",
|
||||
"classnames": "^2.2.6",
|
||||
"dicom-microscopy-viewer": "^0.6.1"
|
||||
}
|
||||
}
|
||||
@@ -1,29 +0,0 @@
|
||||
import OHIF from '@ohif/core';
|
||||
|
||||
const { utils } = OHIF;
|
||||
|
||||
const SOP_CLASS_UIDS = {
|
||||
VL_WHOLE_SLIDE_MICROSCOPY_IMAGE_STORAGE: '1.2.840.10008.5.1.4.1.1.77.1.6',
|
||||
};
|
||||
|
||||
const DicomMicroscopySopClassHandler = {
|
||||
id: 'DicomMicroscopySopClassHandlerPlugin',
|
||||
sopClassUIDs: [SOP_CLASS_UIDS.VL_WHOLE_SLIDE_MICROSCOPY_IMAGE_STORAGE],
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
// Note: We are passing the dicomweb client into each viewport!
|
||||
|
||||
return {
|
||||
plugin: 'microscopy',
|
||||
Modality: 'SM',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
dicomWebClient,
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
};
|
||||
},
|
||||
};
|
||||
|
||||
export default DicomMicroscopySopClassHandler;
|
||||
@@ -1,106 +0,0 @@
|
||||
import React, { Component } from 'react';
|
||||
import ReactResizeDetector from 'react-resize-detector';
|
||||
import debounce from 'lodash.debounce';
|
||||
|
||||
class DicomMicroscopyViewport extends Component {
|
||||
state = {
|
||||
error: null,
|
||||
};
|
||||
|
||||
viewer = null;
|
||||
|
||||
constructor(props) {
|
||||
super(props);
|
||||
|
||||
this.container = React.createRef();
|
||||
|
||||
this.debouncedResize = debounce(() => {
|
||||
if (this.viewer) this.viewer.resize();
|
||||
}, 100);
|
||||
}
|
||||
|
||||
// install the microscopy renderer into the web page.
|
||||
// you should only do this once.
|
||||
installOpenLayersRenderer(container, displaySet) {
|
||||
const dicomWebClient = displaySet.dicomWebClient;
|
||||
|
||||
const searchInstanceOptions = {
|
||||
studyInstanceUID: displaySet.StudyInstanceUID,
|
||||
seriesInstanceUID: displaySet.SeriesInstanceUID,
|
||||
};
|
||||
|
||||
dicomWebClient
|
||||
.searchForInstances(searchInstanceOptions)
|
||||
.then(instances => {
|
||||
const promises = [];
|
||||
for (let i = 0; i < instances.length; i++) {
|
||||
const sopInstanceUID = instances[i]['00080018']['Value'][0];
|
||||
|
||||
const retrieveInstanceOptions = {
|
||||
studyInstanceUID: displaySet.StudyInstanceUID,
|
||||
seriesInstanceUID: displaySet.SeriesInstanceUID,
|
||||
sopInstanceUID,
|
||||
};
|
||||
|
||||
const promise = dicomWebClient
|
||||
.retrieveInstanceMetadata(retrieveInstanceOptions)
|
||||
.then(metadata => {
|
||||
const ImageType = metadata[0]['00080008']['Value'];
|
||||
if (ImageType[2] === 'VOLUME') {
|
||||
return metadata[0];
|
||||
}
|
||||
});
|
||||
promises.push(promise);
|
||||
}
|
||||
return Promise.all(promises);
|
||||
})
|
||||
.then(async metadata => {
|
||||
metadata = metadata.filter(m => m);
|
||||
|
||||
const { api } = await import(
|
||||
/* webpackChunkName: "dicom-microscopy-viewer" */ 'dicom-microscopy-viewer'
|
||||
);
|
||||
const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
|
||||
|
||||
this.viewer = new microscopyViewer({
|
||||
client: dicomWebClient,
|
||||
metadata,
|
||||
retrieveRendered: false,
|
||||
});
|
||||
|
||||
this.viewer.render({ container });
|
||||
});
|
||||
}
|
||||
|
||||
componentDidMount() {
|
||||
const { displaySet } = this.props.viewportData;
|
||||
|
||||
this.installOpenLayersRenderer(this.container.current, displaySet);
|
||||
}
|
||||
|
||||
render() {
|
||||
const style = { width: '100%', height: '100%' };
|
||||
return (
|
||||
<div className={'DicomMicroscopyViewer'} style={style}>
|
||||
{ReactResizeDetector && (
|
||||
<ReactResizeDetector
|
||||
handleWidth
|
||||
handleHeight
|
||||
onResize={this.onWindowResize}
|
||||
/>
|
||||
)}
|
||||
{this.state.error ? (
|
||||
<h2>{JSON.stringify(this.state.error)}</h2>
|
||||
) : (
|
||||
<div style={style} ref={this.container} />
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
onWindowResize = () => {
|
||||
this.debouncedResize();
|
||||
};
|
||||
}
|
||||
|
||||
export default DicomMicroscopyViewport;
|
||||
@@ -1,28 +0,0 @@
|
||||
import React from 'react';
|
||||
import DicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler.js';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./DicomMicroscopyViewport');
|
||||
});
|
||||
|
||||
const DicomMicroscopyViewport = props => {
|
||||
return (
|
||||
<React.Suspense fallback={<div>Loading...</div>}>
|
||||
<Component {...props} />
|
||||
</React.Suspense>
|
||||
);
|
||||
};
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'microscopy',
|
||||
|
||||
getViewportModule() {
|
||||
return DicomMicroscopyViewport;
|
||||
},
|
||||
getSopClassHandlerModule() {
|
||||
return DicomMicroscopySopClassHandler;
|
||||
},
|
||||
};
|
||||
@@ -1,8 +0,0 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -1,38 +0,0 @@
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomPdf',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
});
|
||||
};
|
||||
@@ -1,171 +0,0 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.0.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.2...@ohif/extension-dicom-pdf@1.0.3) (2020-04-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.1...@ohif/extension-dicom-pdf@1.0.2) (2020-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.0...@ohif/extension-dicom-pdf@1.0.1) (2019-12-16)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Update ohif pdf extension to optionally use pdfjs ([#1162](https://github.com/OHIF/Viewers/issues/1162)) ([31e542d](https://github.com/OHIF/Viewers/commit/31e542dfd973c3e982ede6d02d79bfe65175e792)), closes [#1049](https://github.com/OHIF/Viewers/issues/1049)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.4...@ohif/extension-dicom-pdf@1.0.0) (2019-09-27)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
|
||||
|
||||
|
||||
### BREAKING CHANGES
|
||||
|
||||
* DICOM Seg
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.3...@ohif/extension-dicom-pdf@0.50.4) (2019-09-10)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.2...@ohif/extension-dicom-pdf@0.50.3) (2019-09-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.1...@ohif/extension-dicom-pdf@0.50.2) (2019-09-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* measurementsAPI issue caused by production build ([#842](https://github.com/OHIF/Viewers/issues/842)) ([49d3439](https://github.com/OHIF/Viewers/commit/49d3439))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.0-alpha.10...@ohif/extension-dicom-pdf@0.50.1) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.50.0-alpha.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.9...@ohif/extension-dicom-pdf@0.50.0-alpha.10) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.0.8-alpha.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.8...@ohif/extension-dicom-pdf@0.0.8-alpha.9) (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.0.8-alpha.8 (2019-08-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.6...@ohif/extension-dicom-pdf@0.0.8-alpha.7) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.5...@ohif/extension-dicom-pdf@0.0.8-alpha.6) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.4...@ohif/extension-dicom-pdf@0.0.8-alpha.5) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.3...@ohif/extension-dicom-pdf@0.0.8-alpha.4) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.2...@ohif/extension-dicom-pdf@0.0.8-alpha.3) (2019-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.0.8-alpha.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.1...@ohif/extension-dicom-pdf@0.0.8-alpha.2) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
## [0.0.8-alpha.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.0.8-alpha.0...@ohif/extension-dicom-pdf@0.0.8-alpha.1) (2019-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
## 0.0.8-alpha.0 (2019-08-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
@@ -1,21 +0,0 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -1 +0,0 @@
|
||||
# @ohif/extension-dicom-pdf
|
||||
@@ -1,44 +0,0 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-pdf",
|
||||
"version": "1.0.3",
|
||||
"description": "OHIF extension for Dicom PDF",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"dev:dicom-pdf": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.11.0",
|
||||
"react-dom": "^16.11.0",
|
||||
"webpack": "^4.0.0"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.7.6",
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.isequal": "^4.5.0",
|
||||
"pdfjs-dist": "^2.2.228"
|
||||
},
|
||||
"gitHead": "a5baa9228c0eda0df880136bde4420d78e6f8706"
|
||||
}
|
||||
@@ -1,27 +0,0 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { connect } from 'react-redux';
|
||||
import OHIFDicomPDFViewport from './OHIFDicomPDFViewport';
|
||||
|
||||
const { setViewportActive } = OHIF.redux.actions;
|
||||
|
||||
const mapStateToProps = (state, ownProps) => {
|
||||
const { activeViewportIndex } = state.viewports;
|
||||
return { activeViewportIndex };
|
||||
};
|
||||
|
||||
const mapDispatchToProps = (dispatch, ownProps) => {
|
||||
const { viewportIndex } = ownProps;
|
||||
|
||||
return {
|
||||
setViewportActive: () => {
|
||||
dispatch(setViewportActive(viewportIndex));
|
||||
},
|
||||
};
|
||||
};
|
||||
|
||||
const ConnectedOHIFDicomPDFViewer = connect(
|
||||
mapStateToProps,
|
||||
mapDispatchToProps
|
||||
)(OHIFDicomPDFViewport);
|
||||
|
||||
export default ConnectedOHIFDicomPDFViewer;
|
||||
@@ -1,62 +0,0 @@
|
||||
.DicomPDFViewport {
|
||||
--header-height: 50px;
|
||||
}
|
||||
|
||||
.DicomPDFViewport #toolbar {
|
||||
display: flex;
|
||||
align-items: center;
|
||||
color: #fff;
|
||||
padding: 0.5em;
|
||||
border-bottom: var(--ui-border-thickness) solid var(--ui-border-color);
|
||||
height: var(--header-height);
|
||||
}
|
||||
|
||||
.DicomPDFViewport #canvas {
|
||||
height: calc(100% - var(--header-height));
|
||||
overflow-y: scroll;
|
||||
}
|
||||
|
||||
.DicomPDFViewport #text-layer {
|
||||
height: 100%;
|
||||
margin-top: var(--header-height);
|
||||
}
|
||||
|
||||
.DicomPDFViewport #pdf-canvas-container {
|
||||
position: relative;
|
||||
}
|
||||
|
||||
.DicomPDFViewport canvas, #text-layer {
|
||||
display: block;
|
||||
margin: 0 auto;
|
||||
overflow: hidden;
|
||||
}
|
||||
|
||||
.DicomPDFViewport #toolbar button {
|
||||
color: currentColor;
|
||||
background-color: transparent;
|
||||
font: inherit;
|
||||
border: var(--ui-border-thickness) solid var(--ui-border-color);
|
||||
border-radius: 3px;
|
||||
padding: 0.25em 0.5em;
|
||||
margin-right: 0.5em;
|
||||
cursor: pointer;
|
||||
}
|
||||
|
||||
.DicomPDFViewport #text-layer {
|
||||
position: absolute;
|
||||
left: 0;
|
||||
top: 0;
|
||||
right: 0;
|
||||
bottom: 0;
|
||||
overflow: hidden;
|
||||
opacity: 0.2;
|
||||
line-height: 1;
|
||||
}
|
||||
|
||||
.DicomPDFViewport #text-layer>span {
|
||||
color: transparent;
|
||||
position: absolute;
|
||||
white-space: pre;
|
||||
cursor: text;
|
||||
transform-origin: 0% 0%;
|
||||
}
|
||||
@@ -1,265 +0,0 @@
|
||||
import React, { Component, createRef } from 'react';
|
||||
import dicomParser from 'dicom-parser';
|
||||
import PDFJS from 'pdfjs-dist';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
import TypedArrayProp from './TypedArrayProp';
|
||||
import './DicomPDFViewport.css';
|
||||
|
||||
import pdfjsBuild from 'pdfjs-dist/build/pdf';
|
||||
import pdfjsWorker from 'pdfjs-dist/build/pdf.worker.entry';
|
||||
pdfjsBuild.GlobalWorkerOptions.workerSrc = pdfjsWorker;
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1',
|
||||
};
|
||||
|
||||
class DicomPDFViewport extends Component {
|
||||
constructor(props) {
|
||||
super(props);
|
||||
|
||||
this.state = {
|
||||
fileURL: null,
|
||||
error: null,
|
||||
currentPageIndex: 1,
|
||||
pdf: null,
|
||||
scale: 1,
|
||||
};
|
||||
|
||||
this.canvas = createRef();
|
||||
this.textLayer = createRef();
|
||||
}
|
||||
|
||||
static propTypes = {
|
||||
byteArray: TypedArrayProp.uint8,
|
||||
useNative: PropTypes.bool,
|
||||
viewportData: PropTypes.object,
|
||||
activeViewportIndex: PropTypes.number,
|
||||
setViewportActive: PropTypes.func,
|
||||
viewportIndex: PropTypes.number,
|
||||
};
|
||||
|
||||
static defaultProps = {
|
||||
useNative: false,
|
||||
};
|
||||
|
||||
async componentDidMount() {
|
||||
const dataSet = this.parseByteArray(this.props.byteArray);
|
||||
const fileURL = this.getPDFFileUrl(dataSet, this.props.byteArray);
|
||||
|
||||
this.setState(state => ({ ...state, fileURL }));
|
||||
|
||||
if (!this.props.useNative) {
|
||||
const pdf = await PDFJS.getDocument(fileURL).promise;
|
||||
this.setState(
|
||||
state => ({ ...state, pdf }),
|
||||
() => this.updatePDFCanvas()
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
updatePDFCanvas = async () => {
|
||||
const { pdf, scale, currentPageIndex } = this.state;
|
||||
const context = this.canvas.getContext('2d');
|
||||
|
||||
const page = await pdf.getPage(currentPageIndex);
|
||||
let viewport = page.getViewport({ scale });
|
||||
|
||||
this.canvas.height = viewport.height;
|
||||
this.canvas.width = viewport.width;
|
||||
|
||||
const renderContext = {
|
||||
canvasContext: context,
|
||||
viewport: viewport,
|
||||
};
|
||||
|
||||
await page.render(renderContext);
|
||||
const textContent = await page.getTextContent();
|
||||
|
||||
this.textLayer.innerHTML = '';
|
||||
this.textLayer.style.height = viewport.height + 'px';
|
||||
this.textLayer.style.width = viewport.width + 'px';
|
||||
|
||||
PDFJS.renderTextLayer({
|
||||
textContent,
|
||||
container: this.textLayer,
|
||||
viewport,
|
||||
textDivs: [],
|
||||
});
|
||||
};
|
||||
|
||||
componentDidUpdate(prevProps, prevState) {
|
||||
const { currentPageIndex, scale } = this.state;
|
||||
const newValidScale = prevState.scale !== scale && scale > 0;
|
||||
const newValidPageNumber =
|
||||
prevState.currentPageIndex !== currentPageIndex && currentPageIndex > 0;
|
||||
|
||||
if (newValidScale || newValidPageNumber) {
|
||||
this.updatePDFCanvas();
|
||||
}
|
||||
}
|
||||
|
||||
getPDFFileUrl = (dataSet, byteArray) => {
|
||||
let pdfByteArray = byteArray;
|
||||
|
||||
if (dataSet) {
|
||||
const SOPClassUID = dataSet.string('x00080016');
|
||||
|
||||
if (SOPClassUID !== SOP_CLASS_UIDS.ENCAPSULATED_PDF) {
|
||||
throw new Error('This is not a DICOM-encapsulated PDF');
|
||||
}
|
||||
|
||||
const fileTag = dataSet.elements.x00420011;
|
||||
const offset = fileTag.dataOffset;
|
||||
const remainder = offset + fileTag.length;
|
||||
pdfByteArray = dataSet.byteArray.slice(offset, remainder);
|
||||
}
|
||||
|
||||
const PDF = new Blob([pdfByteArray], { type: 'application/pdf' });
|
||||
const fileURL = URL.createObjectURL(PDF);
|
||||
|
||||
return fileURL;
|
||||
};
|
||||
|
||||
onPageChange = async event => {
|
||||
const { currentPageIndex, pdf } = this.state;
|
||||
let newPageIndex = currentPageIndex;
|
||||
|
||||
const action = event.target.getAttribute('data-pager');
|
||||
if (action === 'prev') {
|
||||
if (currentPageIndex === 1) {
|
||||
return;
|
||||
}
|
||||
newPageIndex -= 1;
|
||||
if (currentPageIndex < 0) {
|
||||
newPageIndex = 0;
|
||||
}
|
||||
}
|
||||
|
||||
if (action === 'next') {
|
||||
if (currentPageIndex === pdf.numPages - 1) {
|
||||
return;
|
||||
}
|
||||
newPageIndex += 1;
|
||||
if (currentPageIndex > pdf.numPages - 1) {
|
||||
newPageIndex = pdf.numPages - 1;
|
||||
}
|
||||
}
|
||||
|
||||
this.setState(state => ({ ...state, currentPageIndex: newPageIndex }));
|
||||
};
|
||||
|
||||
onZoomChange = () => {
|
||||
let newZoomValue = this.state.scale;
|
||||
|
||||
const action = event.target.getAttribute('data-pager');
|
||||
|
||||
if (action === '+') {
|
||||
newZoomValue += 0.25;
|
||||
}
|
||||
|
||||
if (action === '-') {
|
||||
newZoomValue -= 0.25;
|
||||
}
|
||||
|
||||
this.setState(state => ({ ...state, scale: newZoomValue }));
|
||||
};
|
||||
|
||||
parseByteArray = byteArray => {
|
||||
const options = { untilTag: '' };
|
||||
|
||||
let dataSet;
|
||||
try {
|
||||
dataSet = dicomParser.parseDicom(byteArray, options);
|
||||
} catch (error) {
|
||||
this.setState(state => ({ ...state, error }));
|
||||
}
|
||||
|
||||
return dataSet;
|
||||
};
|
||||
|
||||
setViewportActiveHandler = () => {
|
||||
const {
|
||||
setViewportActive,
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
} = this.props;
|
||||
|
||||
if (viewportIndex !== activeViewportIndex) {
|
||||
setViewportActive(viewportIndex);
|
||||
}
|
||||
};
|
||||
|
||||
downloadPDFCanvas = () => {
|
||||
const { fileURL } = this.state;
|
||||
const a = document.createElement('a');
|
||||
a.href = fileURL;
|
||||
a.download = fileURL.substr(fileURL.lastIndexOf('/') + 1);
|
||||
document.body.appendChild(a);
|
||||
a.click();
|
||||
document.body.removeChild(a);
|
||||
};
|
||||
|
||||
render() {
|
||||
const { fileURL, pdf, error } = this.state;
|
||||
|
||||
return (
|
||||
<div
|
||||
className={'DicomPDFViewport'}
|
||||
onClick={this.setViewportActiveHandler}
|
||||
onScroll={this.setViewportActiveHandler}
|
||||
style={{ width: '100%', height: '100%' }}
|
||||
>
|
||||
{!this.props.useNative ? (
|
||||
<>
|
||||
<div id="toolbar">
|
||||
<div id="pager">
|
||||
{pdf && pdf.numPages > 1 && (
|
||||
<>
|
||||
<button data-pager="prev" onClick={this.onPageChange}>
|
||||
{`<`}
|
||||
</button>
|
||||
<button data-pager="next" onClick={this.onPageChange}>
|
||||
{`>`}
|
||||
</button>
|
||||
</>
|
||||
)}
|
||||
<button data-pager="-" onClick={this.onZoomChange}>
|
||||
{`-`}
|
||||
</button>
|
||||
<button data-pager="+" onClick={this.onZoomChange}>
|
||||
{`+`}
|
||||
</button>
|
||||
<button onClick={this.downloadPDFCanvas}>Download</button>
|
||||
</div>
|
||||
</div>
|
||||
<div id="canvas">
|
||||
<div id="pdf-canvas-container">
|
||||
<canvas
|
||||
id="pdf-canvas"
|
||||
ref={canvas => (this.canvas = canvas)}
|
||||
/>
|
||||
<div
|
||||
id="text-layer"
|
||||
ref={textLayer => (this.textLayer = textLayer)}
|
||||
></div>
|
||||
</div>
|
||||
</div>
|
||||
</>
|
||||
) : (
|
||||
<object
|
||||
aria-label="PDF Viewer"
|
||||
data={fileURL}
|
||||
type="application/pdf"
|
||||
width="100%"
|
||||
height="100%"
|
||||
/>
|
||||
)}
|
||||
{error && <h2>{JSON.stringify(error)}</h2>}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
export default DicomPDFViewport;
|
||||
@@ -1,15 +0,0 @@
|
||||
import React from 'react';
|
||||
import PropTypes from "prop-types";
|
||||
|
||||
function OHIFComponentPlugin(props) {
|
||||
return (<React.Fragment>{props.children}</React.Fragment>);
|
||||
}
|
||||
|
||||
OHIFComponentPlugin.propTypes = {
|
||||
id: PropTypes.string.isRequired,
|
||||
init: PropTypes.func.isRequired,
|
||||
destroy: PropTypes.func.isRequired,
|
||||
children: PropTypes.node
|
||||
};
|
||||
|
||||
export default OHIFComponentPlugin;
|
||||
@@ -1,29 +0,0 @@
|
||||
import { MODULE_TYPES, utils } from '@ohif/core';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1',
|
||||
};
|
||||
|
||||
const OHIFDicomPDFSopClassHandler = {
|
||||
id: 'OHIFDicomPDFSopClassHandlerPlugin',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs: [SOP_CLASS_UIDS.ENCAPSULATED_PDF],
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient, authorizationHeaders) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
return {
|
||||
plugin: 'pdf',
|
||||
Modality: 'DOC',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
authorizationHeaders: authorizationHeaders,
|
||||
};
|
||||
},
|
||||
};
|
||||
|
||||
export default OHIFDicomPDFSopClassHandler;
|
||||
@@ -1,72 +0,0 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import OHIF from '@ohif/core';
|
||||
import OHIFComponentPlugin from './OHIFComponentPlugin.js';
|
||||
import DicomPDFViewport from './DicomPDFViewport';
|
||||
|
||||
const { DicomLoaderService } = OHIF.utils;
|
||||
|
||||
class OHIFDicomPDFViewport extends Component {
|
||||
static propTypes = {
|
||||
studies: PropTypes.object,
|
||||
displaySet: PropTypes.object,
|
||||
viewportIndex: PropTypes.number,
|
||||
viewportData: PropTypes.object,
|
||||
activeViewportIndex: PropTypes.number,
|
||||
setViewportActive: PropTypes.func,
|
||||
};
|
||||
|
||||
state = {
|
||||
byteArray: null,
|
||||
error: null,
|
||||
};
|
||||
|
||||
static id = 'DicomPDFViewportPDF';
|
||||
|
||||
static init() {
|
||||
console.log('DicomPDFViewport init()');
|
||||
}
|
||||
|
||||
static destroy() {
|
||||
console.log('DicomPDFViewport destroy()');
|
||||
}
|
||||
|
||||
componentDidMount() {
|
||||
const { displaySet, studies } = this.props.viewportData;
|
||||
|
||||
DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
|
||||
data => this.setState({ byteArray: new Uint8Array(data) }),
|
||||
error => {
|
||||
this.setState({ error });
|
||||
throw new Error(error);
|
||||
}
|
||||
);
|
||||
}
|
||||
|
||||
render() {
|
||||
const {
|
||||
setViewportActive,
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
} = this.props;
|
||||
const { byteArray, error } = this.state;
|
||||
const { id, init, destroy } = OHIFDicomPDFViewport;
|
||||
const pluginProps = { id, init, destroy };
|
||||
|
||||
return (
|
||||
<OHIFComponentPlugin {...pluginProps}>
|
||||
{byteArray && (
|
||||
<DicomPDFViewport
|
||||
byteArray={byteArray}
|
||||
setViewportActive={setViewportActive}
|
||||
viewportIndex={viewportIndex}
|
||||
activeViewportIndex={activeViewportIndex}
|
||||
/>
|
||||
)}
|
||||
{error && <h2>{JSON.stringify(error)}</h2>}
|
||||
</OHIFComponentPlugin>
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
export default OHIFDicomPDFViewport;
|
||||
@@ -1,137 +0,0 @@
|
||||
// https://github.com/facebook/prop-types/issues/69
|
||||
|
||||
export const TypedArrayProp = {
|
||||
any: (props, propName, componentName) => {
|
||||
let obj = props[propName];
|
||||
if (!(obj instanceof Float64Array ||
|
||||
obj instanceof Float32Array ||
|
||||
obj instanceof Int32Array ||
|
||||
obj instanceof Int16Array ||
|
||||
obj instanceof Int8Array ||
|
||||
obj instanceof Uint32Array ||
|
||||
obj instanceof Uint16Array ||
|
||||
obj instanceof Uint8Array ||
|
||||
obj instanceof Uint8ClampedArray)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a typed array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float64: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Float64Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Float64Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Float32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Float32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
float: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Float64Array ||
|
||||
props[propName] instanceof Float32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Float32Array or Float64Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected an Int32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int16: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int16Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected an In16Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int8: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int8Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected an Int8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
int: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Int32Array ||
|
||||
props[propName] instanceof Int16Array ||
|
||||
props[propName] instanceof Int8Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected an Int32Array, In16Array, or Int8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint32: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint32Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Uint32Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint16: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint16Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Uint16Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint8: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint8Array)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Uint8Array.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint8clamped: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint8ClampedArray)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Uint8ClampedArray.'
|
||||
);
|
||||
}
|
||||
},
|
||||
|
||||
uint: (props, propName, componentName) => {
|
||||
if (!(props[propName] instanceof Uint32Array ||
|
||||
props[propName] instanceof Uint16Array ||
|
||||
props[propName] instanceof Uint8Array ||
|
||||
props[propName] instanceof Uint8ClampedArray)) {
|
||||
return new Error(
|
||||
'Invalid prop `' + propName + '` supplied to' +
|
||||
' `' + componentName + '`. Expected a Uint32Array, Uint16Array, Uint8Array, or Uint8ClampedArray.'
|
||||
);
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
export { TypedArrayProp as default };
|
||||
@@ -1,27 +0,0 @@
|
||||
import React from 'react';
|
||||
import OHIFDicomPDFSopClassHandler from './OHIFDicomPDFSopClassHandler.js';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./ConnectedOHIFDicomPDFViewer');
|
||||
});
|
||||
|
||||
const ConnectedOHIFDicomPDFViewer = props => {
|
||||
return (
|
||||
<React.Suspense fallback={<div>Loading...</div>}>
|
||||
<Component {...props} />
|
||||
</React.Suspense>
|
||||
);
|
||||
};
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'pdf',
|
||||
getViewportModule() {
|
||||
return ConnectedOHIFDicomPDFViewer;
|
||||
},
|
||||
getSopClassHandlerModule() {
|
||||
return OHIFDicomPDFSopClassHandler;
|
||||
},
|
||||
};
|
||||
@@ -1,8 +0,0 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -1,44 +0,0 @@
|
||||
const webpack = require('webpack');
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomSeg',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
plugins: [
|
||||
new webpack.optimize.LimitChunkCountPlugin({
|
||||
maxChunks: 1,
|
||||
}),
|
||||
],
|
||||
});
|
||||
};
|
||||
@@ -1,60 +0,0 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.1.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.3...@ohif/extension-dicom-rt@0.1.4) (2020-05-14)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Load default display set when no time metadata ([#1684](https://github.com/OHIF/Viewers/issues/1684)) ([f7b8b6a](https://github.com/OHIF/Viewers/commit/f7b8b6a41c4626084ef56b0fdf7363e914b143c4)), closes [#1683](https://github.com/OHIF/Viewers/issues/1683)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.2...@ohif/extension-dicom-rt@0.1.3) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.1...@ohif/extension-dicom-rt@0.1.2) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.0...@ohif/extension-dicom-rt@0.1.1) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.0.2...@ohif/extension-dicom-rt@0.1.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.0.2 (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
@@ -1,21 +0,0 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -1 +0,0 @@
|
||||
# @ohif/extension-dicom-rt
|
||||
@@ -1,43 +0,0 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.1.4",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"dev:dicom-html": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"prepublishOnly": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "5.1.2",
|
||||
"dcmjs": "0.16.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
}
|
||||
@@ -1,237 +0,0 @@
|
||||
import { MODULE_TYPES, utils, DICOMWeb } from '@ohif/core';
|
||||
import loadRTStruct from './loadRTStruct';
|
||||
|
||||
import id from './id';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
DICOM_RT_STRUCT: '1.2.840.10008.5.1.4.1.1.481.3',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
const OHIFDicomRTStructSopClassHandler = {
|
||||
id: 'OHIFDicomRTStructSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries: function(
|
||||
series,
|
||||
study,
|
||||
dicomWebClient,
|
||||
authorizationHeaders
|
||||
) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
const metadata = instance.getData().metadata;
|
||||
const {
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
FrameOfReferenceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
} = metadata;
|
||||
|
||||
// TODO -> GET REFERENCED FRAME OF REFERENCE SEQUENCE.
|
||||
|
||||
const rtStructDisplaySet = {
|
||||
Modality: 'RTSTRUCT',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
FrameOfReferenceUID,
|
||||
authorizationHeaders,
|
||||
metadata,
|
||||
isDerived: true,
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
};
|
||||
|
||||
if (!metadata.ReferencedSeriesSequence) {
|
||||
const ReferencedFrameOfReferenceSequence =
|
||||
metadata.ReferencedFrameOfReferenceSequence;
|
||||
|
||||
if (ReferencedFrameOfReferenceSequence) {
|
||||
// TODO -> @dannyrb Do we augment metadata or add a (potentially large? fallback list in filterDerivedDisplaySets )
|
||||
metadata.ReferencedSeriesSequence = _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
ReferencedFrameOfReferenceSequence
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
rtStructDisplaySet.load = function(referencedDisplaySet, studies) {
|
||||
return loadRTStruct(
|
||||
rtStructDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies
|
||||
).catch(error => {
|
||||
rtStructDisplaySet.isLoaded = false;
|
||||
throw new Error(error);
|
||||
});
|
||||
};
|
||||
|
||||
return rtStructDisplaySet;
|
||||
},
|
||||
};
|
||||
|
||||
function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
ReferencedFrameOfReferenceSequence
|
||||
) {
|
||||
const ReferencedSeriesSequence = [];
|
||||
|
||||
_getSequenceAsArray(ReferencedFrameOfReferenceSequence).forEach(
|
||||
referencedFrameOfReference => {
|
||||
const { RTReferencedStudySequence } = referencedFrameOfReference;
|
||||
|
||||
_getSequenceAsArray(RTReferencedStudySequence).forEach(
|
||||
rtReferencedStudy => {
|
||||
const { RTReferencedSeriesSequence } = rtReferencedStudy;
|
||||
|
||||
_getSequenceAsArray(RTReferencedSeriesSequence).forEach(
|
||||
rtReferencedSeries => {
|
||||
const ReferencedInstanceSequence = [];
|
||||
const {
|
||||
ContourImageSequence,
|
||||
SeriesInstanceUID,
|
||||
} = rtReferencedSeries;
|
||||
|
||||
_getSequenceAsArray(ContourImageSequence).forEach(
|
||||
contourImage => {
|
||||
ReferencedInstanceSequence.push({
|
||||
ReferencedSOPInstanceUID:
|
||||
contourImage.ReferencedSOPInstanceUID,
|
||||
ReferencedSOPClassUID: contourImage.ReferencedSOPClassUID,
|
||||
});
|
||||
}
|
||||
);
|
||||
|
||||
const referencedSeries = {
|
||||
SeriesInstanceUID,
|
||||
ReferencedInstanceSequence,
|
||||
};
|
||||
|
||||
ReferencedSeriesSequence.push(referencedSeries);
|
||||
}
|
||||
);
|
||||
}
|
||||
);
|
||||
}
|
||||
);
|
||||
|
||||
return ReferencedSeriesSequence;
|
||||
}
|
||||
|
||||
function _getSequenceAsArray(sequence) {
|
||||
return Array.isArray(sequence) ? sequence : [sequence];
|
||||
}
|
||||
|
||||
function _getReferencedFrameOfReferenceSequence(instance) {
|
||||
const referencedFrameOfReferenceSequenceRaw = instance['30060010'];
|
||||
|
||||
const referencedFrameOfReferenceSequence = [];
|
||||
|
||||
if (
|
||||
!referencedFrameOfReferenceSequenceRaw ||
|
||||
!referencedFrameOfReferenceSequenceRaw.Value
|
||||
) {
|
||||
return undefined;
|
||||
}
|
||||
|
||||
referencedFrameOfReferenceSequenceRaw.Value.forEach(
|
||||
referencedFrameOfReferenceRaw => {
|
||||
const frameOfReferenceUID = DICOMWeb.getString(
|
||||
referencedFrameOfReferenceRaw['00200052']
|
||||
);
|
||||
|
||||
const referencedFrameOfReference = { frameOfReferenceUID };
|
||||
const RTReferencedStudySequenceRaw =
|
||||
referencedFrameOfReferenceRaw['30060012'];
|
||||
|
||||
referencedFrameOfReferenceSequence.push(referencedFrameOfReference);
|
||||
|
||||
if (RTReferencedStudySequenceRaw && RTReferencedStudySequenceRaw.Value) {
|
||||
referencedFrameOfReference.rtReferencedStudySequence = [];
|
||||
|
||||
const { rtReferencedStudySequence } = referencedFrameOfReference;
|
||||
|
||||
RTReferencedStudySequenceRaw.Value.forEach(rtReferencedStudyRaw => {
|
||||
const referencedSopClassUID = DICOMWeb.getString(
|
||||
rtReferencedStudyRaw['00081150']
|
||||
);
|
||||
|
||||
const referencedSOPInstanceUID = DICOMWeb.getString(
|
||||
rtReferencedStudyRaw['00081155']
|
||||
);
|
||||
|
||||
const rtReferencedStudy = {
|
||||
referencedSopClassUID,
|
||||
referencedSOPInstanceUID,
|
||||
rtReferencedSeriesSequence: [],
|
||||
};
|
||||
|
||||
rtReferencedStudySequence.push(rtReferencedStudy);
|
||||
|
||||
const { rtReferencedSeriesSequence } = rtReferencedStudy;
|
||||
|
||||
const rtReferencedSeriesSequenceRaw =
|
||||
rtReferencedStudyRaw['30060014'];
|
||||
|
||||
rtReferencedSeriesSequenceRaw.Value.forEach(rtReferencedSeriesRaw => {
|
||||
const seriesInstanceUID = DICOMWeb.getString(
|
||||
rtReferencedSeriesRaw['0020000E']
|
||||
);
|
||||
|
||||
const rtReferencedSeries = {
|
||||
seriesInstanceUID,
|
||||
contourImageSequence: [],
|
||||
};
|
||||
|
||||
rtReferencedSeriesSequence.push(rtReferencedSeries);
|
||||
|
||||
const { contourImageSequence } = rtReferencedSeries;
|
||||
|
||||
const contourImageSequenceRaw = rtReferencedSeriesRaw['30060016'];
|
||||
|
||||
contourImageSequenceRaw.Value.forEach(contourImageRaw => {
|
||||
const referencedSOPClassUID = DICOMWeb.getString(
|
||||
contourImageRaw['00081150']
|
||||
);
|
||||
|
||||
const referencedSOPInstanceUID = DICOMWeb.getString(
|
||||
contourImageRaw['00081155']
|
||||
);
|
||||
|
||||
const referencedFrameNumber = DICOMWeb.getString(
|
||||
contourImageRaw['00081160']
|
||||
);
|
||||
const referencedSegmentNumber = DICOMWeb.getString(
|
||||
contourImageRaw['0062000B']
|
||||
);
|
||||
|
||||
const contourImage = {
|
||||
referencedSOPClassUID,
|
||||
referencedSOPInstanceUID,
|
||||
referencedFrameNumber,
|
||||
referencedSegmentNumber,
|
||||
};
|
||||
|
||||
contourImageSequence.push(contourImage);
|
||||
});
|
||||
});
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return referencedFrameOfReferenceSequence;
|
||||
}
|
||||
|
||||
export default OHIFDicomRTStructSopClassHandler;
|
||||
@@ -1,267 +0,0 @@
|
||||
import React from 'react';
|
||||
|
||||
const LoadingIndicator = ({
|
||||
height = '200px',
|
||||
width = '200px',
|
||||
expand = false,
|
||||
}) => {
|
||||
return (
|
||||
<div style={expand ? { height: '100%', width: '100%' } : {}}>
|
||||
<svg
|
||||
style={{
|
||||
margin: 'auto',
|
||||
background: 'none',
|
||||
display: 'block',
|
||||
shapeRendering: 'auto',
|
||||
}}
|
||||
width={width}
|
||||
height={height}
|
||||
viewBox="0 0 100 100"
|
||||
preserveAspectRatio="xMidYMid"
|
||||
>
|
||||
<g transform="rotate(0 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.9166666666666666s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(30 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.8333333333333334s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(60 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.75s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(90 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.6666666666666666s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(120 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.5833333333333334s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(150 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.5s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(180 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.4166666666666667s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(210 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.3333333333333333s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(240 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.25s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(270 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.16666666666666666s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(300 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="-0.08333333333333333s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
<g transform="rotate(330 50 50)">
|
||||
<rect
|
||||
x="49"
|
||||
y="24"
|
||||
rx="0"
|
||||
ry="0"
|
||||
width="2"
|
||||
height="12"
|
||||
fill="#20a5d6"
|
||||
>
|
||||
<animate
|
||||
attributeName="opacity"
|
||||
values="1;0"
|
||||
keyTimes="0;1"
|
||||
dur="1s"
|
||||
begin="0s"
|
||||
repeatCount="indefinite"
|
||||
></animate>
|
||||
</rect>
|
||||
</g>
|
||||
</svg>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
export default LoadingIndicator;
|
||||
@@ -1,44 +0,0 @@
|
||||
.dcmrt-panel-section {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
color: var(--text-primary-color);
|
||||
font-size: 12px;
|
||||
}
|
||||
|
||||
.dcmrt-panel-section .header {
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
background-color: var(--ui-gray-dark);
|
||||
border-radius: 5px;
|
||||
font-weight: bold;
|
||||
padding: 10px 15px;
|
||||
}
|
||||
|
||||
.dcmrt-panel-section .header .eye-icon,
|
||||
.dcmrt-panel-section .header .angle-double-down,
|
||||
.dcmrt-panel-section .header .angle-double-up {
|
||||
cursor: pointer;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.dcmrt-panel-section .header .eye-icon:hover,
|
||||
.dcmrt-panel-section .header .angle-double-down:hover,
|
||||
.dcmrt-panel-section .header .angle-double-up:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
|
||||
.dcmrt-panel-section .header .eye-icon.expanded {
|
||||
color: var(--default-color);
|
||||
}
|
||||
|
||||
.icons {
|
||||
display: flex;
|
||||
align-items: center;
|
||||
border-radius: 5px;
|
||||
}
|
||||
|
||||
.icons .angle-double-down, .icons .angle-double-up {
|
||||
margin-left: 15px;
|
||||
}
|
||||
@@ -1,86 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Icon } from '@ohif/ui';
|
||||
|
||||
import './PanelSection.css';
|
||||
import LoadingIndicator from '../LoadingIndicator/LoadingIndicator';
|
||||
|
||||
const PanelSection = ({
|
||||
title,
|
||||
children,
|
||||
visible = false,
|
||||
expanded = false,
|
||||
loading = false,
|
||||
hideVisibleButton = false,
|
||||
onVisibilityChange = () => {},
|
||||
onExpandChange = () => {},
|
||||
}) => {
|
||||
const [isExpanded, setIsExpanded] = useState(expanded);
|
||||
const [isVisible, setIsVisible] = useState(visible);
|
||||
|
||||
useEffect(() => {
|
||||
setIsVisible(visible);
|
||||
}, [visible]);
|
||||
|
||||
return (
|
||||
<div
|
||||
className="dcmrt-panel-section"
|
||||
style={{
|
||||
marginBottom: isExpanded ? 0 : 2,
|
||||
height: isExpanded ? '100%' : 'unset',
|
||||
}}
|
||||
>
|
||||
<div className="header">
|
||||
<div>{title}</div>
|
||||
<div className="icons">
|
||||
{!hideVisibleButton && (
|
||||
<Icon
|
||||
className={`eye-icon ${isVisible && 'expanded'}`}
|
||||
name={isVisible ? 'eye' : 'eye-closed'}
|
||||
width="20px"
|
||||
height="20px"
|
||||
onClick={() => {
|
||||
const newVisibility = !isVisible;
|
||||
setIsVisible(newVisibility);
|
||||
onVisibilityChange(newVisibility);
|
||||
}}
|
||||
/>
|
||||
)}
|
||||
<Icon
|
||||
className={`angle-double-${
|
||||
isExpanded ? 'down' : 'up'
|
||||
} ${isExpanded && 'expanded'}`}
|
||||
name={`angle-double-${isExpanded ? 'down' : 'up'}`}
|
||||
width="20px"
|
||||
height="20px"
|
||||
onClick={() => {
|
||||
const newExpandValue = !isExpanded;
|
||||
setIsExpanded(newExpandValue);
|
||||
onExpandChange(newExpandValue);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
{loading && isExpanded && (
|
||||
<LoadingIndicator expand height="70px" width="70px" />
|
||||
)}
|
||||
{children}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
PanelSection.propTypes = {
|
||||
title: PropTypes.string.isRequired,
|
||||
children: PropTypes.oneOfType([PropTypes.node, PropTypes.func]).isRequired,
|
||||
visible: PropTypes.bool,
|
||||
expanded: PropTypes.bool,
|
||||
onVisibilityChange: PropTypes.func,
|
||||
};
|
||||
|
||||
PanelSection.defaultProps = {
|
||||
visible: false,
|
||||
expanded: false,
|
||||
onVisibilityChange: () => {},
|
||||
};
|
||||
|
||||
export default PanelSection;
|
||||
@@ -1,26 +0,0 @@
|
||||
.dcmrt-panel {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
background-color: var(--primary-background-color);
|
||||
height: 100%;
|
||||
width: 100%;
|
||||
padding: 20px;
|
||||
}
|
||||
|
||||
.dcmrt-panel .dcmrt-panel-header {
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
justify-content: space-between;
|
||||
color: white;
|
||||
}
|
||||
|
||||
.dcmrt-panel .dcmrt-panel-header .cog-icon {
|
||||
align-self: flex-end;
|
||||
color: var(--default-color);
|
||||
cursor: pointer;
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
|
||||
.dcmrt-panel .dcmrt-panel-header .cog-icon:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
@@ -1,307 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
|
||||
import { ScrollableArea, TableList, Icon } from '@ohif/ui';
|
||||
|
||||
import { utils } from '@ohif/core';
|
||||
|
||||
import './RTPanel.css';
|
||||
import StructureSetItem from '../StructureSetItem/StructureSetItem';
|
||||
import RTPanelSettings from '../RTSettings/RTSettings';
|
||||
import PanelSection from '../PanelSection/PanelSection';
|
||||
import LoadingIndicator from '../LoadingIndicator/LoadingIndicator';
|
||||
|
||||
const { studyMetadataManager } = utils;
|
||||
|
||||
const refreshViewport = () => {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
};
|
||||
|
||||
/**
|
||||
* RTPanel component
|
||||
*
|
||||
* @param {Object} props
|
||||
* @param {Array} props.studies
|
||||
* @param {Array} props.viewports - viewportSpecificData
|
||||
* @param {number} props.activeIndex - activeViewportIndex
|
||||
* @param {number} props.isOpen - isOpen
|
||||
* @returns component
|
||||
*/
|
||||
const RTPanel = ({
|
||||
studies,
|
||||
viewports,
|
||||
activeIndex,
|
||||
isOpen,
|
||||
onContourItemClick,
|
||||
}) => {
|
||||
const [selectedContour, setSelectedContour] = useState();
|
||||
const DEFAULT_SET_INDEX = 0;
|
||||
const DEFAULT_STATE = {
|
||||
referencedDisplaysets: [],
|
||||
sets: [],
|
||||
selectedSet: null,
|
||||
};
|
||||
|
||||
const [state, setState] = useState(DEFAULT_STATE);
|
||||
const [showSettings, setShowSettings] = useState(false);
|
||||
const activeViewport = viewports[activeIndex];
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on rts to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the rtstruct panel
|
||||
* or other components that could rely on loaded rtstructs that
|
||||
* the first batch of structs were loaded so that e.g. when the user opens the panel
|
||||
* before the structs are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new structs.
|
||||
*
|
||||
* This limitation is due to the fact that the rtmodule is an object (which will be
|
||||
* updated after the structs are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the rtstruct loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
useEffect(() => {
|
||||
document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);
|
||||
|
||||
return () => {
|
||||
document.removeEventListener(
|
||||
'extensiondicomrtrtloaded',
|
||||
updateStructureSets
|
||||
);
|
||||
};
|
||||
}, []);
|
||||
|
||||
const updateStructureSets = () => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const StructureSets = module.state.StructureSets;
|
||||
|
||||
if (StructureSets && StructureSets.length) {
|
||||
const viewportSets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
|
||||
Modality: 'RTSTRUCT',
|
||||
});
|
||||
|
||||
if (viewportSets.length) {
|
||||
const defaultSet = viewportSets[DEFAULT_SET_INDEX];
|
||||
setState({
|
||||
referencedDisplaysets,
|
||||
selectedSet: defaultSet,
|
||||
sets: viewportSets,
|
||||
});
|
||||
} else {
|
||||
setState(DEFAULT_STATE);
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
updateStructureSets();
|
||||
}, [studies, viewports, activeIndex]);
|
||||
|
||||
useEffect(() => {
|
||||
setShowSettings(showSettings && !isOpen);
|
||||
}, [isOpen]);
|
||||
|
||||
const toContourItem = (
|
||||
{ ROINumber, ROIName, RTROIObservations, colorArray, visible },
|
||||
loadedSet
|
||||
) => {
|
||||
let interpretedType = '';
|
||||
if (RTROIObservations && RTROIObservations.RTROIInterpretedType) {
|
||||
interpretedType = `(${RTROIObservations.RTROIInterpretedType})`;
|
||||
}
|
||||
|
||||
const isSameContour = selectedContour && selectedContour === ROINumber;
|
||||
return (
|
||||
<StructureSetItem
|
||||
key={ROINumber}
|
||||
selected={isSameContour}
|
||||
onClick={() => {
|
||||
setSelectedContour(isSameContour ? null : ROINumber);
|
||||
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
|
||||
state.selectedSet.SeriesInstanceUID,
|
||||
ROINumber,
|
||||
imageIds
|
||||
);
|
||||
|
||||
const imageIndex = imageIds.indexOf(imageId);
|
||||
const SOPInstanceUID = cornerstone.metaData.get(
|
||||
'SOPInstanceUID',
|
||||
imageId
|
||||
);
|
||||
const StudyInstanceUID = cornerstone.metaData.get(
|
||||
'StudyInstanceUID',
|
||||
imageId
|
||||
);
|
||||
|
||||
onContourItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
imageIndex,
|
||||
activeViewportIndex: activeIndex,
|
||||
});
|
||||
}}
|
||||
label={`${ROIName} ${interpretedType}`}
|
||||
index={ROINumber}
|
||||
color={colorArray}
|
||||
visible={visible}
|
||||
onVisibilityChange={() => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
module.setters.toggleROIContour(
|
||||
state.selectedSet.SeriesInstanceUID,
|
||||
ROINumber
|
||||
);
|
||||
}}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
const configurationChangeHandler = newConfiguration => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
module.configuration.lineWidth = newConfiguration.lineWidth;
|
||||
module.configuration.opacity = newConfiguration.opacity;
|
||||
refreshViewport();
|
||||
};
|
||||
|
||||
if (showSettings) {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
return (
|
||||
<RTPanelSettings
|
||||
configuration={module.configuration}
|
||||
onBack={() => setShowSettings(false)}
|
||||
onChange={configurationChangeHandler}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
return (
|
||||
<div className="dcmrt-panel">
|
||||
<div className="dcmrt-panel-header">
|
||||
<h3>RT Structure Sets</h3>
|
||||
<Icon
|
||||
className="cog-icon"
|
||||
name="cog"
|
||||
width="25px"
|
||||
height="25px"
|
||||
onClick={() => setShowSettings(true)}
|
||||
/>
|
||||
</div>
|
||||
{!state.referencedDisplaysets.length && (
|
||||
<LoadingIndicator expand height="70px" width="70px" />
|
||||
)}
|
||||
{state.sets &&
|
||||
state.referencedDisplaysets.map(displaySet => {
|
||||
const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
|
||||
const loadedSet = sets.find(
|
||||
set => set.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
return (
|
||||
<PanelSection
|
||||
key={SeriesInstanceUID}
|
||||
title={metadata.StructureSetLabel}
|
||||
loading={!isLoaded || !loadedSet}
|
||||
visible={isLoaded && loadedSet.visible}
|
||||
hideVisibleButton={!isLoaded}
|
||||
expanded={
|
||||
isLoaded &&
|
||||
loadedSet.SeriesInstanceUID ===
|
||||
state.selectedSet.SeriesInstanceUID
|
||||
}
|
||||
onVisibilityChange={newVisibility => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
loadedSet.ROIContours.forEach(({ ROINumber }) => {
|
||||
module.setters.toggleROIContour(
|
||||
loadedSet.SeriesInstanceUID,
|
||||
ROINumber
|
||||
);
|
||||
});
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
setState(state => ({ ...state, sets }));
|
||||
refreshViewport();
|
||||
}}
|
||||
onExpandChange={async () => {
|
||||
if (!isLoaded) {
|
||||
await displaySet.load(viewports[activeIndex], studies);
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
const selectedSet = sets.find(
|
||||
set => set.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
setState(state => ({ ...state, selectedSet, sets }));
|
||||
}
|
||||
}}
|
||||
>
|
||||
<ScrollableArea>
|
||||
<TableList headless>
|
||||
{isLoaded &&
|
||||
loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
|
||||
</TableList>
|
||||
</ScrollableArea>
|
||||
</PanelSection>
|
||||
);
|
||||
})}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
RTPanel.propTypes = {
|
||||
viewports: PropTypes.shape({
|
||||
displaySetInstanceUID: PropTypes.string,
|
||||
frameRate: PropTypes.any,
|
||||
InstanceNumber: PropTypes.number,
|
||||
isMultiFrame: PropTypes.bool,
|
||||
isReconstructable: PropTypes.bool,
|
||||
Modality: PropTypes.string,
|
||||
plugin: PropTypes.string,
|
||||
SeriesDate: PropTypes.string,
|
||||
SeriesDescription: PropTypes.string,
|
||||
SeriesInstanceUID: PropTypes.string,
|
||||
SeriesNumber: PropTypes.any,
|
||||
SeriesTime: PropTypes.string,
|
||||
sopClassUIDs: PropTypes.arrayOf(PropTypes.string),
|
||||
StudyInstanceUID: PropTypes.string,
|
||||
}),
|
||||
activeIndex: PropTypes.number.isRequired,
|
||||
studies: PropTypes.array.isRequired,
|
||||
isOpen: PropTypes.bool.isRequired,
|
||||
};
|
||||
|
||||
RTPanel.defaultProps = {};
|
||||
|
||||
export default RTPanel;
|
||||
@@ -1,88 +0,0 @@
|
||||
.dcmrt-settings {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
padding: 20px;
|
||||
color: white;
|
||||
}
|
||||
|
||||
.dcmrt-settings .settings-title {
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
padding-bottom: 20px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .settings-title h3 {
|
||||
color: var(--text-primary-color);
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
.dcmrt-settings .settings-section .content {
|
||||
padding: 10px;
|
||||
background-color: var(--ui-gray-dark);
|
||||
border-radius: 5px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .settings-section .header {
|
||||
border-bottom: 2px solid black;
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
background-color: var(--ui-gray-dark);
|
||||
border-radius: 5px;
|
||||
font-weight: bold;
|
||||
font-size: 12px;
|
||||
padding: 10px 15px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .settings-section p {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
.dcmrt-settings .range {
|
||||
display: flex;
|
||||
padding: 10px 10px;
|
||||
font-size: 12px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .range:not(:last-of-type) {
|
||||
padding-bottom: 0;
|
||||
}
|
||||
|
||||
.dcmrt-settings .range label {
|
||||
margin: 0;
|
||||
display: unset;
|
||||
min-width: 40px;
|
||||
max-width: 40px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .range input {
|
||||
width: 100%;
|
||||
padding: 0 20px 0 20px;
|
||||
}
|
||||
|
||||
.dcmrt-settings .return-button {
|
||||
color: #333;
|
||||
background-color: #fff;
|
||||
padding: 4px 12px;
|
||||
line-height: 1.4;
|
||||
text-align: center;
|
||||
white-space: nowrap;
|
||||
vertical-align: middle;
|
||||
cursor: pointer;
|
||||
user-select: none;
|
||||
border: 1px solid #ccc;
|
||||
border-radius: 4px;
|
||||
transition: all 0.15s ease;
|
||||
}
|
||||
|
||||
.dcmrt-settings .return-button:hover,
|
||||
.dcmrt-settings .return-button:active,
|
||||
.dcmrt-settings .return-button.active {
|
||||
background-color: var(--active-color);
|
||||
border-color: var(--ui-border-color-active);
|
||||
color: #fff;
|
||||
}
|
||||
@@ -1,71 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Range } from '@ohif/ui';
|
||||
|
||||
import './RTSettings.css';
|
||||
|
||||
const RTSettings = ({ configuration, onBack, onChange }) => {
|
||||
const toFloat = value => parseFloat(value / 100).toFixed(2);
|
||||
|
||||
const save = (field, value) => {
|
||||
onChange({ ...configuration, [field]: value });
|
||||
};
|
||||
|
||||
const SettingsSection = ({ title, children }) => {
|
||||
return (
|
||||
<div className="settings-section">
|
||||
<div className="header">{title}</div>
|
||||
<div className="content">{children}</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="dcmrt-settings">
|
||||
<div className="settings-title">
|
||||
<h3>RT Structure Set Settings</h3>
|
||||
<button className="return-button" onClick={onBack}>
|
||||
Back
|
||||
</button>
|
||||
</div>
|
||||
|
||||
<SettingsSection title="Segment Outline">
|
||||
<div className="range">
|
||||
<label htmlFor="range">Opacity</label>
|
||||
<Range
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
value={configuration.opacity * 100}
|
||||
onChange={event => save('opacity', toFloat(event.target.value))}
|
||||
/>
|
||||
</div>
|
||||
<div className="range">
|
||||
<label htmlFor="range">Width</label>
|
||||
<Range
|
||||
showValue
|
||||
step={1}
|
||||
min={1}
|
||||
max={5}
|
||||
value={configuration.lineWidth}
|
||||
onChange={event => save('lineWidth', parseInt(event.target.value))}
|
||||
/>
|
||||
</div>
|
||||
</SettingsSection>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
RTSettings.propTypes = {
|
||||
configuration: PropTypes.shape({
|
||||
lineWidth: PropTypes.oneOfType([PropTypes.number, PropTypes.string])
|
||||
.isRequired,
|
||||
opacity: PropTypes.oneOfType([PropTypes.number, PropTypes.string])
|
||||
.isRequired,
|
||||
}).isRequired,
|
||||
onBack: PropTypes.func.isRequired,
|
||||
onChange: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default RTSettings;
|
||||
@@ -1,88 +0,0 @@
|
||||
.dcmrt-structure-set-item .item-color-section {
|
||||
display: flex;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
flex-direction: column;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-color {
|
||||
margin-top: 8px;
|
||||
border-radius: 100%;
|
||||
width: 20px;
|
||||
height: 20px;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-info {
|
||||
display: inline-block;
|
||||
margin-top: 9px;
|
||||
padding-left: 9px;
|
||||
width: 90px;
|
||||
border-left: 1px solid var(--text-secondary-color);
|
||||
color: var(--text-primary-color);
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item.selected .item-actions {
|
||||
height: 35px;
|
||||
visibility: visible;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-actions {
|
||||
margin-left: -1px;
|
||||
background-color: var(--ui-gray-darker);
|
||||
height: 0;
|
||||
overflow: hidden;
|
||||
transition: all 0.3s ease;
|
||||
visibility: hidden;
|
||||
padding-left: 14px;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-actions .btnAction {
|
||||
background-color: transparent;
|
||||
border: none;
|
||||
color: var(--default-color);
|
||||
cursor: pointer;
|
||||
line-height: 35px;
|
||||
height: 35px;
|
||||
transition: all 0.3s ease;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-actions .btnAction:hover, .dcmrt-structure-set-item .item-actions .btnAction:active {
|
||||
color: var(--text-primary-color);
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-actions .btnAction i {
|
||||
margin-right: 4px;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item.selected .item-actions {
|
||||
height: 35px;
|
||||
visibility: visible;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label {
|
||||
display: flex;
|
||||
justify-content: space-between;
|
||||
padding-right: 10px;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label span {
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 40px); /* calc(100% - 50px); 20px = eye icon */
|
||||
text-overflow: ellipsis;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label .eye-icon {
|
||||
cursor: pointer;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label .eye-icon:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label .eye-icon.--visible {
|
||||
color: var(--default-color);
|
||||
}
|
||||
@@ -1,105 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { TableListItem, Icon } from '@ohif/ui';
|
||||
|
||||
import './StructureSetItem.css';
|
||||
|
||||
const ColoredCircle = ({ color }) => {
|
||||
return (
|
||||
<div
|
||||
className="item-color"
|
||||
style={{ backgroundColor: `rgba(${color.join(',')})` }}
|
||||
></div>
|
||||
);
|
||||
};
|
||||
|
||||
ColoredCircle.propTypes = {
|
||||
color: PropTypes.array.isRequired,
|
||||
};
|
||||
|
||||
const StructureSetItem = ({
|
||||
index,
|
||||
label,
|
||||
onClick,
|
||||
itemClass,
|
||||
color,
|
||||
visible = true,
|
||||
onVisibilityChange,
|
||||
selected = false,
|
||||
}) => {
|
||||
const [isVisible, setIsVisible] = useState(visible);
|
||||
|
||||
useEffect(() => {
|
||||
setIsVisible(visible);
|
||||
}, [visible]);
|
||||
|
||||
return (
|
||||
<div className={`dcmrt-structure-set-item ${selected && 'selected'}`}>
|
||||
<TableListItem
|
||||
key={index}
|
||||
itemKey={index}
|
||||
itemIndex={index}
|
||||
itemClass={itemClass}
|
||||
itemMeta={<ColoredCircle color={color} />}
|
||||
itemMetaClass="item-color-section"
|
||||
onItemClick={onClick}
|
||||
>
|
||||
<div>
|
||||
<div className="item-label" style={{ marginBottom: 4 }}>
|
||||
<span>{label}</span>
|
||||
<Icon
|
||||
className={`eye-icon ${isVisible && '--visible'}`}
|
||||
name={isVisible ? 'eye' : 'eye-closed'}
|
||||
width="20px"
|
||||
height="20px"
|
||||
onClick={event => {
|
||||
event.stopPropagation();
|
||||
const newVisibility = !isVisible;
|
||||
setIsVisible(newVisibility);
|
||||
onVisibilityChange(newVisibility);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
{false && <div className="item-info">{'...'}</div>}
|
||||
{false && (
|
||||
<div className="item-actions">
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Relabelling...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Relabel
|
||||
</button>
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Editing description...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Description
|
||||
</button>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</TableListItem>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
StructureSetItem.propTypes = {
|
||||
index: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
|
||||
label: PropTypes.string.isRequired,
|
||||
onClick: PropTypes.func,
|
||||
itemClass: PropTypes.string,
|
||||
color: PropTypes.array.isRequired,
|
||||
};
|
||||
|
||||
StructureSetItem.defaultProps = {
|
||||
itemClass: '',
|
||||
onClick: () => {},
|
||||
};
|
||||
|
||||
export default StructureSetItem;
|
||||
@@ -1,3 +0,0 @@
|
||||
const id = 'rt';
|
||||
|
||||
export default id;
|
||||
@@ -1,77 +0,0 @@
|
||||
import React from 'react';
|
||||
|
||||
import init from './init.js';
|
||||
import sopClassHandlerModule from './OHIFDicomRTStructSopClassHandler';
|
||||
import id from './id.js';
|
||||
import RTPanel from './components/RTPanel/RTPanel';
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id,
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {object} [configuration={}]
|
||||
* @param {object|array} [configuration.csToolsConfig] - Passed directly to `initCornerstoneTools`
|
||||
*/
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getPanelModule({ commandsManager }) {
|
||||
const ExtendedRTPanel = props => {
|
||||
const contourItemClickHandler = contourData => {
|
||||
commandsManager.runCommand('jumpToImage', contourData);
|
||||
};
|
||||
|
||||
return (
|
||||
<RTPanel {...props} onContourItemClick={contourItemClickHandler} />
|
||||
);
|
||||
};
|
||||
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'RTSTRUCT',
|
||||
target: 'rt-panel',
|
||||
isDisabled: studies => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
|
||||
for (let i = 0; i < studies.length; i++) {
|
||||
const study = studies[i];
|
||||
|
||||
if (study && study.series) {
|
||||
for (let j = 0; j < study.series.length; j++) {
|
||||
const series = study.series[j];
|
||||
if (
|
||||
/* Could be expanded to contain RTPLAN and RTDOSE information in the future */
|
||||
['RTSTRUCT'].includes(series.Modality)
|
||||
) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
},
|
||||
},
|
||||
],
|
||||
components: [
|
||||
{
|
||||
id: 'rt-panel',
|
||||
component: ExtendedRTPanel,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
},
|
||||
getSopClassHandlerModule({ servicesManager }) {
|
||||
return sopClassHandlerModule;
|
||||
},
|
||||
};
|
||||
@@ -1,25 +0,0 @@
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import RTStructDisplayTool from './tools/RTStructDisplayTool';
|
||||
import rtStructModule from './tools/modules/rtStructModule';
|
||||
|
||||
import TOOL_NAMES from './utils/toolNames';
|
||||
|
||||
const defaultConfig = {
|
||||
TOOL_NAMES: {
|
||||
RT_STRUCT_DISPLAY_TOOL: 'RTStructDisplayTool',
|
||||
},
|
||||
};
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {object} configuration
|
||||
* @param {Object|Array} configuration.csToolsConfig
|
||||
*/
|
||||
export default function init({ servicesManager, configuration = {} }) {
|
||||
const conifg = Object.assign({}, defaultConfig, configuration);
|
||||
|
||||
TOOL_NAMES.RT_STRUCT_DISPLAY_TOOL = conifg.TOOL_NAMES.RT_STRUCT_DISPLAY_TOOL;
|
||||
|
||||
cornerstoneTools.register('module', 'rtstruct', rtStructModule);
|
||||
cornerstoneTools.addTool(RTStructDisplayTool);
|
||||
}
|
||||
@@ -1,308 +0,0 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import dcmjs from 'dcmjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import transformPointsToImagePlane from './utils/transformPointsToImagePlane';
|
||||
import TOOL_NAMES from './utils/toolNames';
|
||||
|
||||
const dicomlab2RGB = dcmjs.data.Colors.dicomlab2RGB;
|
||||
const globalImageIdSpecificToolStateManager =
|
||||
cornerstoneTools.globalImageIdSpecificToolStateManager;
|
||||
const { DicomLoaderService } = OHIF.utils;
|
||||
|
||||
export default async function loadRTStruct(
|
||||
rtStructDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies
|
||||
) {
|
||||
const rtStructModule = cornerstoneTools.getModule('rtstruct');
|
||||
|
||||
// Set here is loading is asynchronous.
|
||||
// If this function throws its set back to false.
|
||||
rtStructDisplaySet.isLoaded = true;
|
||||
|
||||
const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
|
||||
|
||||
const segArrayBuffer = await DicomLoaderService.findDicomDataPromise(
|
||||
rtStructDisplaySet,
|
||||
studies
|
||||
);
|
||||
|
||||
const dicomData = dcmjs.data.DicomMessage.readFile(segArrayBuffer);
|
||||
const rtStructDataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
|
||||
dicomData.dict
|
||||
);
|
||||
|
||||
rtStructDataset._meta = dcmjs.data.DicomMetaDictionary.namifyDataset(
|
||||
dicomData.meta
|
||||
);
|
||||
|
||||
// global cornerstone tools state to attach measurements to.
|
||||
const toolState = globalImageIdSpecificToolStateManager.saveToolState();
|
||||
|
||||
const {
|
||||
StructureSetROISequence,
|
||||
ROIContourSequence,
|
||||
RTROIObservationsSequence,
|
||||
StructureSetLabel,
|
||||
} = rtStructDataset;
|
||||
|
||||
// Define our structure set entry and add it to the rtstruct module state.
|
||||
const structureSet = {
|
||||
StructureSetLabel,
|
||||
SeriesInstanceUID: rtStructDataset.SeriesInstanceUID,
|
||||
ROIContours: [],
|
||||
referencedSeriesSequence:
|
||||
rtStructDisplaySet.metadata.ReferencedSeriesSequence,
|
||||
visible: true,
|
||||
};
|
||||
|
||||
rtStructModule.setters.structureSet(structureSet);
|
||||
|
||||
const imageIdSopInstanceUidPairs = _getImageIdSopInstanceUidPairsForDisplaySet(
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID
|
||||
);
|
||||
|
||||
const rtStructDisplayToolName = TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL;
|
||||
|
||||
for (let i = 0; i < ROIContourSequence.length; i++) {
|
||||
const ROIContour = ROIContourSequence[i];
|
||||
const { ReferencedROINumber, ContourSequence } = ROIContour;
|
||||
|
||||
if (!ContourSequence) {
|
||||
continue;
|
||||
}
|
||||
|
||||
_setROIContourMetadata(
|
||||
structureSet,
|
||||
StructureSetROISequence,
|
||||
RTROIObservationsSequence,
|
||||
ROIContour
|
||||
);
|
||||
|
||||
for (let c = 0; c < ContourSequence.length; c++) {
|
||||
const {
|
||||
ContourImageSequence,
|
||||
ContourData,
|
||||
NumberOfContourPoints,
|
||||
ContourGeometricType,
|
||||
} = ContourSequence[c];
|
||||
|
||||
if (ContourGeometricType !== 'CLOSED_PLANAR') {
|
||||
// TODO: Do we want to visualise types other than closed planar?
|
||||
// We could easily do open planar.
|
||||
continue;
|
||||
}
|
||||
|
||||
const sopInstanceUID = ContourImageSequence.ReferencedSOPInstanceUID;
|
||||
const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
|
||||
const imageIdSpecificToolData = _getOrCreateImageIdSpecificToolData(
|
||||
toolState,
|
||||
imageId,
|
||||
rtStructDisplayToolName
|
||||
);
|
||||
|
||||
const imagePlane = cornerstone.metaData.get('imagePlaneModule', imageId);
|
||||
const points = [];
|
||||
|
||||
for (let p = 0; p < NumberOfContourPoints * 3; p += 3) {
|
||||
points.push({
|
||||
x: ContourData[p],
|
||||
y: ContourData[p + 1],
|
||||
z: ContourData[p + 2],
|
||||
});
|
||||
}
|
||||
|
||||
transformPointsToImagePlane(points, imagePlane);
|
||||
|
||||
const measurementData = {
|
||||
handles: {
|
||||
points,
|
||||
},
|
||||
structureSetSeriesInstanceUid: rtStructDataset.SeriesInstanceUID,
|
||||
ROINumber: ReferencedROINumber,
|
||||
};
|
||||
|
||||
imageIdSpecificToolData.push(measurementData);
|
||||
}
|
||||
}
|
||||
|
||||
_setToolEnabledIfNotEnabled(rtStructDisplayToolName);
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on rts to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the rtstruct panel
|
||||
* or other components that could rely on loaded rtstructs that
|
||||
* the first batch of structs were loaded so that e.g. when the user opens the panel
|
||||
* before the structs are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new structs.
|
||||
*
|
||||
* This limitation is due to the fact that the rtmodule is an object (which will be
|
||||
* updated after the structs are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the rtstruct loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
const event = new CustomEvent('extensiondicomrtrtloaded');
|
||||
document.dispatchEvent(event);
|
||||
}
|
||||
|
||||
function _setROIContourMetadata(
|
||||
structureSet,
|
||||
StructureSetROISequence,
|
||||
RTROIObservationsSequence,
|
||||
ROIContour
|
||||
) {
|
||||
const StructureSetROI = StructureSetROISequence.find(
|
||||
structureSetROI =>
|
||||
structureSetROI.ROINumber === ROIContour.ReferencedROINumber
|
||||
);
|
||||
|
||||
const ROIContourData = {
|
||||
ROINumber: StructureSetROI.ROINumber,
|
||||
ROIName: StructureSetROI.ROIName,
|
||||
ROIGenerationAlgorithm: StructureSetROI.ROIGenerationAlgorithm,
|
||||
ROIDescription: StructureSetROI.ROIDescription,
|
||||
visible: true,
|
||||
};
|
||||
|
||||
_setROIContourDataColor(ROIContour, ROIContourData);
|
||||
|
||||
if (RTROIObservationsSequence) {
|
||||
// If present, add additional RTROIObservations metadata.
|
||||
_setROIContourRTROIObservations(
|
||||
ROIContourData,
|
||||
RTROIObservationsSequence,
|
||||
ROIContour.ReferencedROINumber
|
||||
);
|
||||
}
|
||||
|
||||
structureSet.ROIContours.push(ROIContourData);
|
||||
}
|
||||
|
||||
function _setROIContourDataColor(ROIContour, ROIContourData) {
|
||||
let { ROIDisplayColor, RecommendedDisplayCIELabValue } = ROIContour;
|
||||
|
||||
if (!ROIDisplayColor && RecommendedDisplayCIELabValue) {
|
||||
// If ROIDisplayColor is absent, try using the RecommendedDisplayCIELabValue color.
|
||||
ROIDisplayColor = dicomlab2RGB(RecommendedDisplayCIELabValue);
|
||||
}
|
||||
|
||||
if (ROIDisplayColor) {
|
||||
ROIContourData.colorArray = [...ROIDisplayColor];
|
||||
} else {
|
||||
//Choose a color from the cornerstoneTools colorLUT
|
||||
// We sample from the default color LUT here (i.e. 0), as we have nothing else to go on.
|
||||
const { getters } = cornerstoneTools.getModule('segmentation');
|
||||
const color = getters.colorForSegmentIndexColorLUT(
|
||||
0,
|
||||
ROIContourData.ROINumber
|
||||
);
|
||||
|
||||
ROIContourData.colorArray = [...color];
|
||||
}
|
||||
}
|
||||
|
||||
function _setROIContourRTROIObservations(
|
||||
ROIContourData,
|
||||
RTROIObservationsSequence,
|
||||
ROINumber
|
||||
) {
|
||||
const RTROIObservations = RTROIObservationsSequence.find(
|
||||
RTROIObservations => RTROIObservations.ReferencedROINumber === ROINumber
|
||||
);
|
||||
|
||||
if (RTROIObservations) {
|
||||
// Deep copy so we don't keep the reference to the dcmjs dataset entry.
|
||||
const {
|
||||
ObservationNumber,
|
||||
ROIObservationDescription,
|
||||
RTROIInterpretedType,
|
||||
ROIInterpreter,
|
||||
} = RTROIObservations;
|
||||
|
||||
ROIContourData.RTROIObservations = {
|
||||
ObservationNumber,
|
||||
ROIObservationDescription,
|
||||
RTROIInterpretedType,
|
||||
ROIInterpreter,
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
function _setToolEnabledIfNotEnabled(toolName) {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
const { element } = enabledElement;
|
||||
const tool = cornerstoneTools.getToolForElement(element, toolName);
|
||||
|
||||
if (tool.mode !== 'enabled') {
|
||||
// If not already active or passive, set passive so contours render.
|
||||
cornerstoneTools.setToolEnabled(toolName);
|
||||
}
|
||||
|
||||
cornerstone.updateImage(element);
|
||||
});
|
||||
}
|
||||
|
||||
function _getOrCreateImageIdSpecificToolData(toolState, imageId, toolName) {
|
||||
if (toolState.hasOwnProperty(imageId) === false) {
|
||||
toolState[imageId] = {};
|
||||
}
|
||||
|
||||
const imageIdToolState = toolState[imageId];
|
||||
|
||||
// If we don't have tool state for this type of tool, add an empty object
|
||||
if (imageIdToolState.hasOwnProperty(toolName) === false) {
|
||||
imageIdToolState[toolName] = {
|
||||
data: [],
|
||||
};
|
||||
}
|
||||
|
||||
return imageIdToolState[toolName].data;
|
||||
}
|
||||
|
||||
const _getImageId = (imageIdSopInstanceUidPairs, sopInstanceUID) => {
|
||||
const imageIdSopInstanceUidPairsEntry = imageIdSopInstanceUidPairs.find(
|
||||
imageIdSopInstanceUidPairsEntry =>
|
||||
imageIdSopInstanceUidPairsEntry.sopInstanceUID === sopInstanceUID
|
||||
);
|
||||
|
||||
return imageIdSopInstanceUidPairsEntry.imageId;
|
||||
};
|
||||
|
||||
function _getImageIdSopInstanceUidPairsForDisplaySet(
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID
|
||||
) {
|
||||
const study = studies.find(
|
||||
study => study.StudyInstanceUID === StudyInstanceUID
|
||||
);
|
||||
|
||||
const displaySets = study.displaySets.filter(set => {
|
||||
return set.SeriesInstanceUID === SeriesInstanceUID;
|
||||
});
|
||||
|
||||
if (displaySets.length > 1) {
|
||||
console.warn(
|
||||
'More than one display set with the same SeriesInstanceUID. This is not supported yet...'
|
||||
);
|
||||
// TODO -> We could make check the instance list and see if any match?
|
||||
// Do we split the segmentation into two cornerstoneTools segmentations if there are images in both series?
|
||||
// ^ Will that even happen?
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySets[0];
|
||||
|
||||
return referencedDisplaySet.images.map(image => {
|
||||
return {
|
||||
imageId: image.getImageId(),
|
||||
sopInstanceUID: image.getSOPInstanceUID(),
|
||||
};
|
||||
});
|
||||
}
|
||||
@@ -1,91 +0,0 @@
|
||||
import { importInternal, getToolState, toolColors } from 'cornerstone-tools';
|
||||
|
||||
import TOOL_NAMES from '../utils/toolNames';
|
||||
|
||||
// Cornerstone 3rd party dev kit imports
|
||||
const draw = importInternal('drawing/draw');
|
||||
const drawJoinedLines = importInternal('drawing/drawJoinedLines');
|
||||
const getNewContext = importInternal('drawing/getNewContext');
|
||||
const BaseTool = importInternal('base/BaseTool');
|
||||
|
||||
/**
|
||||
* @class RTStructDisplayTool - Renders RTSTRUCT data in a read only manner (i.e. as an overlay).
|
||||
* @extends cornerstoneTools.BaseTool
|
||||
*/
|
||||
export default class RTStructDisplayTool extends BaseTool {
|
||||
constructor(props = {}) {
|
||||
const defaultProps = {
|
||||
mixins: ['enabledOrDisabledBinaryTool'],
|
||||
name: TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL,
|
||||
};
|
||||
|
||||
const initialProps = Object.assign(defaultProps, props);
|
||||
|
||||
super(initialProps);
|
||||
|
||||
this._rtStructModule = cornerstoneTools.getModule('rtstruct');
|
||||
}
|
||||
|
||||
renderToolData(evt) {
|
||||
const eventData = evt.detail;
|
||||
const rtstructModule = this._rtStructModule;
|
||||
|
||||
const toolState = getToolState(evt.currentTarget, this.name);
|
||||
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { lineWidth, opacity } = rtstructModule.configuration;
|
||||
|
||||
// We have tool data for this element - iterate over each one and draw it
|
||||
const context = getNewContext(eventData.canvasContext.canvas);
|
||||
|
||||
for (let i = 0; i < toolState.data.length; i++) {
|
||||
const data = toolState.data[i];
|
||||
|
||||
const structureSet = rtstructModule.getters.structureSet(
|
||||
data.structureSetSeriesInstanceUid
|
||||
);
|
||||
|
||||
// Don't render if entire StructureSet is hidden.
|
||||
if (structureSet.visible === false) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const ROIContourData = rtstructModule.getters.ROIContour(
|
||||
data.structureSetSeriesInstanceUid,
|
||||
data.ROINumber
|
||||
);
|
||||
|
||||
// Don't render if ROIContour is hidden.
|
||||
if (ROIContourData.visible === false) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const points = data.handles.points;
|
||||
|
||||
if (!points.length) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const colorArray = ROIContourData.colorArray;
|
||||
const color = `rgba(${colorArray[0]},${colorArray[1]},${colorArray[2]},${opacity})`;
|
||||
|
||||
lineWidth;
|
||||
|
||||
draw(context, context => {
|
||||
drawJoinedLines(
|
||||
context,
|
||||
eventData.element,
|
||||
points[points.length - 1],
|
||||
points,
|
||||
{
|
||||
color,
|
||||
lineWidth,
|
||||
}
|
||||
);
|
||||
});
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1,67 +0,0 @@
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import TOOL_NAMES from '../../../utils/toolNames';
|
||||
|
||||
const globalImageIdSpecificToolStateManager =
|
||||
cornerstoneTools.globalImageIdSpecificToolStateManager;
|
||||
|
||||
/**
|
||||
* getImageIdOfCenterFrameOfROIContour - Returns the imageId nearest to the center of the
|
||||
* volumes extent in the stack's Z direction which contains one of the ROIContour's Contours.
|
||||
* @param {string} structureSetSeriesInstanceUid The SeriesInstanceUID of the structure set.
|
||||
* @param {number} ROINumber The ROINumber of the region.
|
||||
* @param {string} imageIdsInStack The stack of imageIds.
|
||||
*
|
||||
* @returns The imageId
|
||||
*/
|
||||
export default function getImageIdOfCenterFrameOfROIContour(
|
||||
structureSetSeriesInstanceUid,
|
||||
ROINumber,
|
||||
imageIdsInStack
|
||||
) {
|
||||
const rtStructDisplayToolName = TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL;
|
||||
const toolState = globalImageIdSpecificToolStateManager.saveToolState();
|
||||
const imageIdIndicies = [];
|
||||
|
||||
for (let i = 0; i < imageIdsInStack.length; i++) {
|
||||
const imageId = imageIdsInStack[i];
|
||||
|
||||
const imageIdSpecificToolState = toolState[imageId];
|
||||
|
||||
if (
|
||||
!imageIdSpecificToolState ||
|
||||
!imageIdSpecificToolState[rtStructDisplayToolName] ||
|
||||
!imageIdSpecificToolState[rtStructDisplayToolName].data
|
||||
) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const toolData = imageIdSpecificToolState[rtStructDisplayToolName].data;
|
||||
|
||||
if (
|
||||
_toolDataContainsROIContour(
|
||||
toolData,
|
||||
structureSetSeriesInstanceUid,
|
||||
ROINumber
|
||||
)
|
||||
) {
|
||||
imageIdIndicies.push(i);
|
||||
}
|
||||
}
|
||||
|
||||
const centerImageIdIndex =
|
||||
imageIdIndicies[Math.floor(imageIdIndicies.length / 2)];
|
||||
|
||||
return imageIdsInStack[centerImageIdIndex];
|
||||
}
|
||||
|
||||
function _toolDataContainsROIContour(
|
||||
toolData,
|
||||
structureSetSeriesInstanceUid,
|
||||
ROINumber
|
||||
) {
|
||||
return !!toolData.some(
|
||||
toolDataI =>
|
||||
toolDataI.structureSetSeriesInstanceUid ===
|
||||
structureSetSeriesInstanceUid && toolDataI.ROINumber === ROINumber
|
||||
);
|
||||
}
|
||||
@@ -1,15 +0,0 @@
|
||||
/**
|
||||
* structureSetReferencesSeriesInstanceUid - Returns true if the structure set
|
||||
* references the given SeriesInstanceUID.
|
||||
* @param {*} StructureSet
|
||||
* @param {*} SeriesInstanceUID
|
||||
*/
|
||||
export default function structureSetReferencesSeriesInstanceUid(
|
||||
StructureSet,
|
||||
SeriesInstanceUID
|
||||
) {
|
||||
const { referencedSeriesSequence } = StructureSet;
|
||||
return referencedSeriesSequence.some(
|
||||
referencedSeries => referencedSeries.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
}
|
||||
@@ -1,182 +0,0 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import getImageIdOfCenterFrameOfROIContour from './lib/getImageIdOfCenterFrameOfROIContour';
|
||||
import structureSetReferencesSeriesInstanceUid from './lib/structureSetReferencesSeriesInstanceUid';
|
||||
|
||||
// We should put this as a helper somewhere as we are using it in mutliple places.
|
||||
function refreshViewport() {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
}
|
||||
|
||||
const configuration = {
|
||||
lineWidth: 3,
|
||||
opacity: 1.0,
|
||||
};
|
||||
|
||||
const state = {
|
||||
StructureSets: [],
|
||||
};
|
||||
|
||||
/**
|
||||
* Adds a structure set to the module.
|
||||
* @param {Object} structureSetData The structure set data.
|
||||
*/
|
||||
function setStructureSet(structureSetData) {
|
||||
state.StructureSets.push(structureSetData);
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the StructureSet with the given SeriesInstanceUID.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
*
|
||||
* @returns {Object} The StructureSet.
|
||||
*/
|
||||
function getStructureSet(SeriesInstanceUID) {
|
||||
return state.StructureSets.find(
|
||||
structureSet => structureSet.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the ROI Contour with the given ROINumber on the StructureSet defined by the given
|
||||
* SeriesInstanceUID.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {number} ROINumber The ROINUmber of the ROIContour to fetch.
|
||||
*/
|
||||
function getROIContour(SeriesInstanceUID, ROINumber) {
|
||||
const structureSet = getStructureSet(SeriesInstanceUID);
|
||||
|
||||
if (!structureSet) {
|
||||
return;
|
||||
}
|
||||
|
||||
return structureSet.ROIContours.find(
|
||||
ROIContour => ROIContour.ROINumber === ROINumber
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Hides the StructureSet.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
*/
|
||||
function setHideStructureSet(SeriesInstanceUID) {
|
||||
_setStructureSetVisible(SeriesInstanceUID, false);
|
||||
}
|
||||
|
||||
/**
|
||||
* Shows the StructureSet.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
*/
|
||||
function setShowStructureSet(SeriesInstanceUID) {
|
||||
_setStructureSetVisible(SeriesInstanceUID, true);
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the visibility of the StructureSet.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {boolean} visible Whether the StructureSet should visible or not.
|
||||
*/
|
||||
function _setStructureSetVisible(SeriesInstanceUID, visible = true) {
|
||||
const StructureSet = getStructureSet(SeriesInstanceUID);
|
||||
|
||||
if (StructureSet) {
|
||||
StructureSet.visible = visible;
|
||||
|
||||
refreshViewport();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Toggles the visibility of the StructureSet.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
*/
|
||||
function setToggleStructureSet(SeriesInstanceUID) {
|
||||
const StructureSet = getStructureSet(SeriesInstanceUID);
|
||||
|
||||
if (StructureSet) {
|
||||
StructureSet.visible = !StructureSet.visible;
|
||||
|
||||
refreshViewport();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Hides the ROIContour.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {number} ROINumber The ROINUmber of the ROIContour.
|
||||
*/
|
||||
function setHideROIContour(SeriesInstanceUID, ROINumber) {
|
||||
_setROIContourVisible(SeriesInstanceUID, ROINumber, false);
|
||||
}
|
||||
|
||||
/**
|
||||
* Shows the ROIContour.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {number} ROINumber The ROINUmber of the ROIContour.
|
||||
*/
|
||||
function setShowROIContour(SeriesInstanceUID, ROINumber) {
|
||||
_setROIContourVisible(SeriesInstanceUID, ROINumber, true);
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the visibility of the ROIContour.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {number} ROINumber The ROINUmber of the ROIContour.
|
||||
* @param {boolean} visible Whether the StructureSet should visible or not.
|
||||
*/
|
||||
function _setROIContourVisible(SeriesInstanceUID, ROINumber, visible = true) {
|
||||
const ROIContour = getROIContour(SeriesInstanceUID, ROINumber);
|
||||
|
||||
if (ROIContour) {
|
||||
ROIContour.visible = visible;
|
||||
|
||||
refreshViewport();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Toggles the visibility of the ROIContour.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
|
||||
* @param {number} ROINumber The ROINUmber of the ROIContour.
|
||||
*/
|
||||
function setToggleROIContour(SeriesInstanceUID, ROINumber) {
|
||||
const ROIContour = getROIContour(SeriesInstanceUID, ROINumber);
|
||||
|
||||
if (ROIContour) {
|
||||
ROIContour.visible = !ROIContour.visible;
|
||||
|
||||
refreshViewport();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns an array of StructureSets which reference the given SeriesInstanceUID.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID to check.
|
||||
*/
|
||||
function getStructuresSetsWhichReferenceSeriesInstanceUid(SeriesInstanceUID) {
|
||||
const { StructureSets } = state;
|
||||
return StructureSets.filter(StructureSet =>
|
||||
structureSetReferencesSeriesInstanceUid(StructureSet, SeriesInstanceUID)
|
||||
);
|
||||
}
|
||||
|
||||
export default {
|
||||
getters: {
|
||||
structureSet: getStructureSet,
|
||||
ROIContour: getROIContour,
|
||||
structuresSetsWhichReferenceSeriesInstanceUid: getStructuresSetsWhichReferenceSeriesInstanceUid,
|
||||
imageIdOfCenterFrameOfROIContour: getImageIdOfCenterFrameOfROIContour,
|
||||
},
|
||||
setters: {
|
||||
structureSet: setStructureSet,
|
||||
hideROIContour: setHideROIContour,
|
||||
showROIContour: setShowROIContour,
|
||||
toggleROIContour: setToggleROIContour,
|
||||
hideStructureSet: setHideStructureSet,
|
||||
showStructureSet: setShowStructureSet,
|
||||
toggleStructureSet: setToggleStructureSet,
|
||||
},
|
||||
state,
|
||||
configuration,
|
||||
};
|
||||
@@ -1,5 +0,0 @@
|
||||
const TOOL_NAMES = {
|
||||
RTSTRUCT_DISPLAY_TOOL: 'RTStructDisplayTool',
|
||||
};
|
||||
|
||||
export default TOOL_NAMES;
|
||||
@@ -1,91 +0,0 @@
|
||||
export default function transformPointsToImagePlane(points, imagePlane) {
|
||||
// See Equation C.7.6.2.1-1 of the DICOM standard
|
||||
|
||||
const {
|
||||
rowCosines,
|
||||
columnCosines,
|
||||
rowPixelSpacing: deltaI,
|
||||
columnPixelSpacing: deltaJ,
|
||||
imagePositionPatient,
|
||||
} = imagePlane;
|
||||
|
||||
const X = [rowCosines[0], rowCosines[1], rowCosines[2]];
|
||||
const Y = [columnCosines[0], columnCosines[1], columnCosines[2]];
|
||||
const S = [
|
||||
imagePositionPatient[0],
|
||||
imagePositionPatient[1],
|
||||
imagePositionPatient[2],
|
||||
];
|
||||
|
||||
// 9 sets of simulataneous equations to choose from, choose which set to solve
|
||||
// Based on the largest component of each direction cosine.
|
||||
// This avoids NaNs or floating point errors caused by dividing by very small numbers and ensures a safe mapping
|
||||
// when mapping between planes that are close to orthogonal.
|
||||
|
||||
let ix = 0;
|
||||
let iy = 0;
|
||||
let largestDirectionCosineMagnitude = {
|
||||
x: 0,
|
||||
y: 0,
|
||||
};
|
||||
|
||||
// Find the element with the largest magnitude in each direction cosine vector.
|
||||
for (let i = 0; i < X.length; i++) {
|
||||
if (Math.abs(X[i]) > largestDirectionCosineMagnitude.x) {
|
||||
ix = i;
|
||||
largestDirectionCosineMagnitude.x = Math.abs(X[i]);
|
||||
}
|
||||
if (Math.abs(Y[i]) > largestDirectionCosineMagnitude.y) {
|
||||
iy = i;
|
||||
largestDirectionCosineMagnitude.y = Math.abs(Y[i]);
|
||||
}
|
||||
}
|
||||
|
||||
const ci = {
|
||||
// Index of max elements in X and Y
|
||||
ix,
|
||||
iy,
|
||||
};
|
||||
|
||||
// Sanity Check
|
||||
const directionCosineMagnitude = {
|
||||
x: Math.pow(X[0], 2) + Math.pow(X[1], 2) + Math.pow(X[2], 2),
|
||||
y: Math.pow(Y[0], 2) + Math.pow(Y[1], 2) + Math.pow(Y[2], 2),
|
||||
};
|
||||
|
||||
if (directionCosineMagnitude.x < 0.99 || directionCosineMagnitude.y < 0.99) {
|
||||
throw Error(
|
||||
`Direction cosines do not sum to 1 in quadrature. There is likely a mistake in the DICOM metadata.` +
|
||||
`directionCosineMagnitudes: ${directionCosineMagnitude.x}, ${directionCosineMagnitude.y}`
|
||||
);
|
||||
}
|
||||
|
||||
// Fill in elements that won't change between points
|
||||
const c = [undefined, Y[ci.ix], X[ci.ix], undefined, X[ci.iy], Y[ci.iy]];
|
||||
|
||||
for (let pointI = 0; pointI < points.length; pointI++) {
|
||||
// Subtract imagePositionPatient from the coordinate
|
||||
const r = [
|
||||
points[pointI].x - S[0],
|
||||
points[pointI].y - S[1],
|
||||
points[pointI].z - S[2],
|
||||
];
|
||||
|
||||
// Set the variable terms in c.
|
||||
c[0] = r[ci.ix];
|
||||
c[3] = r[ci.iy];
|
||||
|
||||
// General case: Solves the two choosen simulataneous equations to go from the patient coordinate system to the imagePlane.
|
||||
const i =
|
||||
(c[0] - (c[1] * c[3]) / c[5]) /
|
||||
(c[2] * deltaI * (1 - (c[1] * c[4]) / (c[2] * c[5])));
|
||||
const j = (c[3] - c[4] * i * deltaI) / (c[5] * deltaJ);
|
||||
|
||||
// NOTE: Add (0.5, 0.5) to the coordinate, as PCS reference frame is with respect to the centre of the first pixel.
|
||||
points[pointI].x = i + 0.5;
|
||||
points[pointI].y = j + 0.5;
|
||||
delete points[pointI].z;
|
||||
}
|
||||
|
||||
return;
|
||||
}
|
||||
@@ -1,8 +0,0 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -1,33 +0,0 @@
|
||||
const webpack = require('webpack');
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomSeg',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
plugins: [
|
||||
new webpack.optimize.LimitChunkCountPlugin({
|
||||
maxChunks: 1,
|
||||
}),
|
||||
],
|
||||
});
|
||||
};
|
||||
@@ -1,98 +0,0 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.5...@ohif/extension-dicom-segmentation@0.2.6) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.4...@ohif/extension-dicom-segmentation@0.2.5) (2020-05-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.3...@ohif/extension-dicom-segmentation@0.2.4) (2020-05-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.2...@ohif/extension-dicom-segmentation@0.2.3) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.1...@ohif/extension-dicom-segmentation@0.2.2) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.0...@ohif/extension-dicom-segmentation@0.2.1) (2020-04-27)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Dropdown not updating when selecting segment ([#1675](https://github.com/OHIF/Viewers/issues/1675)) ([20e366f](https://github.com/OHIF/Viewers/commit/20e366ffbd76781f48dc99c9f59e24b255b5e5df)), closes [#1669](https://github.com/OHIF/Viewers/issues/1669)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.1.2...@ohif/extension-dicom-segmentation@0.2.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.1.1...@ohif/extension-dicom-segmentation@0.1.2) (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.1.0...@ohif/extension-dicom-segmentation@0.1.1) (2020-04-01)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* segmentation not loading ([#1566](https://github.com/OHIF/Viewers/issues/1566)) ([4a7ce1c](https://github.com/OHIF/Viewers/commit/4a7ce1c09324d74c61048393e3a2427757e4001a))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# 0.1.0 (2020-03-13)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Segmentations Settings UI - Phase 1 [#1391](https://github.com/OHIF/Viewers/issues/1391) ([#1392](https://github.com/OHIF/Viewers/issues/1392)) ([e8842cf](https://github.com/OHIF/Viewers/commit/e8842cf8aebde98db7fc123e4867c8288552331f)), closes [#1423](https://github.com/OHIF/Viewers/issues/1423)
|
||||
@@ -1,21 +0,0 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -1,65 +0,0 @@
|
||||
# @ohif/dicom-segmentation
|
||||
|
||||
|
||||
|
||||
This extension adds support to view and navigate the segments available in the DICOM SEG,
|
||||
allowing control over visibility of a given segment and providing metadata about the segment(s).
|
||||
|
||||
<!-- TODO: Simple image or GIF? -->
|
||||
|
||||
#### Index
|
||||
|
||||
Extension Id: `com.ohif.dicom-segmentation`
|
||||
|
||||
## Tool Configuration
|
||||
|
||||
Tools can be configured through extension configuration using the tools key:
|
||||
|
||||
```js
|
||||
...
|
||||
cornerstoneExtensionConfig: {
|
||||
tools: {
|
||||
ArrowAnnotate: {
|
||||
configuration: {
|
||||
getTextCallback: (callback, eventDetails) => callback(prompt('Enter your custom annotation')),
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
...
|
||||
```
|
||||
|
||||
## Annotate Tools Configuration
|
||||
|
||||
*We currently support one property for annotation tools.*
|
||||
|
||||
### Hide handles
|
||||
This extension configuration allows you to toggle on/off handle rendering for all annotate tools:
|
||||
|
||||
```js
|
||||
...
|
||||
cornerstoneExtensionConfig: {
|
||||
hideHandles: true,
|
||||
},
|
||||
...
|
||||
|
||||
## Resources
|
||||
|
||||
### Repositories
|
||||
|
||||
- [cornerstonejs/react-cornerstone-viewport][react-viewport]
|
||||
- [cornerstonejs/cornerstoneTools][cornerstone-tools]
|
||||
- [cornerstonejs/cornerstone][cornerstone]
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[docs-commands]: https://www.com
|
||||
[docs-hotkeys]: https://www.com
|
||||
[docs-userprefs]: htt
|
||||
[react-viewport]: https://github.com/cornerstonejs/react-cornerstone-viewport
|
||||
[cornerstone-tools]: https://github.com/cornerstonejs/cornerstoneTools
|
||||
[cornerstone]: https://github.com/cornerstonejs/cornerstone
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,44 +0,0 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.2.6",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"dev:dicom-html": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"prepublishOnly": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "5.1.2",
|
||||
"dcmjs": "0.16.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"gl-matrix": "^3.3.0",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
}
|
||||
-41
@@ -1,41 +0,0 @@
|
||||
.dcmseg-brush-color-selector .selector-buttons button {
|
||||
color: #333;
|
||||
background-color: #fff;
|
||||
padding: 4px 12px;
|
||||
line-height: 1.4;
|
||||
text-align: center;
|
||||
white-space: nowrap;
|
||||
vertical-align: middle;
|
||||
cursor: pointer;
|
||||
user-select: none;
|
||||
border: 1px solid #ccc;
|
||||
border-radius: 4px;
|
||||
transition: all 0.15s ease;
|
||||
}
|
||||
|
||||
.dcmseg-brush-color-selector .selector-buttons button:hover,
|
||||
.dcmseg-brush-color-selector .selector-buttons button:active,
|
||||
.dcmseg-brush-color-selector .selector-buttons button.active {
|
||||
background-color: var(--active-color);
|
||||
border-color: var(--ui-border-color-active);
|
||||
color: #fff;
|
||||
}
|
||||
|
||||
.dcmseg-brush-color-selector .selector-buttons {
|
||||
margin-left: 10px;
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
}
|
||||
|
||||
.dcmseg-brush-color-selector .selector-buttons button:last-of-type {
|
||||
margin-left: 5px;
|
||||
}
|
||||
|
||||
.dcmseg-brush-color-selector .selector-active-segment {
|
||||
border-radius: 100%;
|
||||
width: 32px;
|
||||
height: 32px;
|
||||
text-align: center;
|
||||
line-height: 32px;
|
||||
}
|
||||
@@ -1,28 +0,0 @@
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
import './BrushColorSelector.css';
|
||||
|
||||
const BrushColorSelector = ({ defaultColor, index, onNext, onPrev }) => (
|
||||
<div className="dcmseg-brush-color-selector">
|
||||
<div
|
||||
className="selector-active-segment"
|
||||
style={{ backgroundColor: defaultColor }}
|
||||
>
|
||||
{index}
|
||||
</div>
|
||||
<div className="selector-buttons">
|
||||
<button onClick={onPrev}>Previous</button>
|
||||
<button onClick={onNext}>Next</button>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
BrushColorSelector.propTypes = {
|
||||
defaultColor: PropTypes.string.isRequired,
|
||||
index: PropTypes.oneOfType([PropTypes.number, PropTypes.string]).isRequired,
|
||||
onNext: PropTypes.func.isRequired,
|
||||
onPrev: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default BrushColorSelector;
|
||||
@@ -1,4 +0,0 @@
|
||||
.dcmseg-brush-radius label {
|
||||
display: block;
|
||||
margin-bottom: 8px;
|
||||
}
|
||||
@@ -1,36 +0,0 @@
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Range } from '@ohif/ui';
|
||||
|
||||
import './BrushRadius.css';
|
||||
|
||||
const BrushRadius = ({ value, onChange, min, max, step }) => (
|
||||
<div className="dcmseg-brush-radius">
|
||||
<label htmlFor="dcmseg-brush-radius">Brush Radius</label>
|
||||
<Range
|
||||
value={value}
|
||||
min={min}
|
||||
max={max}
|
||||
step={step}
|
||||
onChange={onChange}
|
||||
id="dcmseg-brush-radius"
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
|
||||
BrushRadius.propTypes = {
|
||||
value: PropTypes.number.isRequired,
|
||||
onChange: PropTypes.number,
|
||||
min: PropTypes.number,
|
||||
max: PropTypes.number,
|
||||
step: PropTypes.number,
|
||||
};
|
||||
|
||||
BrushRadius.defaultProps = {
|
||||
onChange: () => {},
|
||||
min: 1,
|
||||
max: 50,
|
||||
step: 1,
|
||||
};
|
||||
|
||||
export default BrushRadius;
|
||||
@@ -1,83 +0,0 @@
|
||||
.dcmseg-segment-item .segment-color-section {
|
||||
display: flex;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
flex-direction: column;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-color {
|
||||
margin-top: 8px;
|
||||
border-radius: 100%;
|
||||
width: 20px;
|
||||
height: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-info {
|
||||
display: inline-block;
|
||||
margin-top: 9px;
|
||||
padding-left: 9px;
|
||||
width: 90px;
|
||||
border-left: 1px solid var(--text-secondary-color);
|
||||
color: var(--text-primary-color);
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item.selected .segment-actions {
|
||||
height: 35px;
|
||||
visibility: visible;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-actions {
|
||||
margin-left: -1px;
|
||||
background-color: var(--ui-gray-darker);
|
||||
height: 0;
|
||||
overflow: hidden;
|
||||
transition: all 0.3s ease;
|
||||
visibility: hidden;
|
||||
padding-left: 14px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-actions .btnAction {
|
||||
background-color: transparent;
|
||||
border: none;
|
||||
color: var(--default-color);
|
||||
cursor: pointer;
|
||||
line-height: 35px;
|
||||
height: 35px;
|
||||
transition: all 0.3s ease;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-actions .btnAction:hover, .dcmseg-segment-item .segment-actions .btnAction:active {
|
||||
color: var(--text-primary-color);
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-actions .btnAction i {
|
||||
margin-right: 4px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label {
|
||||
display: flex;
|
||||
justify-content: space-between;
|
||||
padding-right: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label span {
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 40px); /* calc(100% - 50px); 20px = eye icon */
|
||||
text-overflow: ellipsis;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon {
|
||||
cursor: pointer;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon.--visible {
|
||||
color: var(--default-color);
|
||||
}
|
||||
@@ -1,104 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { TableListItem, Icon } from '@ohif/ui';
|
||||
|
||||
import './SegmentItem.css';
|
||||
|
||||
const ColoredCircle = ({ color }) => {
|
||||
return (
|
||||
<div
|
||||
className="segment-color"
|
||||
style={{ backgroundColor: `rgba(${color.join(',')})` }}
|
||||
></div>
|
||||
);
|
||||
};
|
||||
|
||||
ColoredCircle.propTypes = {
|
||||
color: PropTypes.array.isRequired,
|
||||
};
|
||||
|
||||
const SegmentItem = ({
|
||||
index,
|
||||
label,
|
||||
onClick,
|
||||
itemClass,
|
||||
color,
|
||||
visible = true,
|
||||
onVisibilityChange,
|
||||
}) => {
|
||||
const [isVisible, setIsVisible] = useState(visible);
|
||||
|
||||
useEffect(() => {
|
||||
setIsVisible(visible);
|
||||
}, [visible]);
|
||||
|
||||
return (
|
||||
<div className="dcmseg-segment-item">
|
||||
<TableListItem
|
||||
key={index}
|
||||
itemKey={index}
|
||||
itemIndex={index}
|
||||
itemClass={itemClass}
|
||||
itemMeta={<ColoredCircle color={color} />}
|
||||
itemMetaClass="segment-color-section"
|
||||
onItemClick={onClick}
|
||||
>
|
||||
<div>
|
||||
<div className="segment-label" style={{ marginBottom: 4 }}>
|
||||
<span>{label}</span>
|
||||
<Icon
|
||||
className={`eye-icon ${isVisible && '--visible'}`}
|
||||
name={isVisible ? 'eye' : 'eye-closed'}
|
||||
width="20px"
|
||||
height="20px"
|
||||
onClick={event => {
|
||||
event.stopPropagation();
|
||||
const newVisibility = !isVisible;
|
||||
setIsVisible(newVisibility);
|
||||
onVisibilityChange(newVisibility);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
{false && <div className="segment-info">{'...'}</div>}
|
||||
{false && (
|
||||
<div className="segment-actions">
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Relabelling...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Relabel
|
||||
</button>
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Editing description...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Description
|
||||
</button>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</TableListItem>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
SegmentItem.propTypes = {
|
||||
index: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
|
||||
label: PropTypes.string.isRequired,
|
||||
onClick: PropTypes.func,
|
||||
itemClass: PropTypes.string,
|
||||
color: PropTypes.array.isRequired,
|
||||
};
|
||||
|
||||
SegmentItem.defaultProps = {
|
||||
itemClass: '',
|
||||
onClick: () => {},
|
||||
};
|
||||
|
||||
export default SegmentItem;
|
||||
@@ -1,25 +0,0 @@
|
||||
.dcmseg-segmentation-item {
|
||||
display: flex;
|
||||
justify-content: start;
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
flex-grow: 1;
|
||||
overflow: hidden;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta-title {
|
||||
text-overflow: ellipsis;
|
||||
overflow: hidden;
|
||||
white-space: nowrap;
|
||||
color: white;
|
||||
max-width: calc(100% - 30px);
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta-description {
|
||||
font-size: 12px;
|
||||
color: var(--text-secondary-color);
|
||||
}
|
||||
@@ -1,27 +0,0 @@
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
import './SegmentationItem.css';
|
||||
|
||||
const SegmentationItem = ({ onClick, title, description }) => {
|
||||
return (
|
||||
<li className="dcmseg-segmentation-item" onClick={onClick}>
|
||||
<div className="segmentation-meta">
|
||||
<div className="segmentation-meta-title">{title}</div>
|
||||
<div className="segmentation-meta-description">{description}</div>
|
||||
</div>
|
||||
</li>
|
||||
);
|
||||
};
|
||||
|
||||
SegmentationItem.propTypes = {
|
||||
onClick: PropTypes.func.isRequired,
|
||||
title: PropTypes.string.isRequired,
|
||||
description: PropTypes.string.isRequired,
|
||||
};
|
||||
|
||||
SegmentationItem.defaultProps = {
|
||||
description: '',
|
||||
};
|
||||
|
||||
export default SegmentationItem;
|
||||
@@ -1,61 +0,0 @@
|
||||
.dcmseg-segmentation-panel {
|
||||
color: white;
|
||||
min-height: 200px;
|
||||
background-color: var(--primary-background-color);
|
||||
height: 100%;
|
||||
width: 100%;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel h3 {
|
||||
padding-left: 20px;
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .segmentations {
|
||||
padding: 0 20px 20px 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .cog-icon {
|
||||
margin: 20px 20px 0 0;
|
||||
align-self: flex-end;
|
||||
color: var(--default-color);
|
||||
cursor: pointer;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .cog-icon:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .segmentation-icon {
|
||||
margin-right: 8px;
|
||||
margin-top: 12px;
|
||||
min-width: 14px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .selector-form {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
justify-content: space-between;
|
||||
align-items: center;
|
||||
padding: 20px;
|
||||
height: 150px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .selector-form>div {
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .selector-form>div:first-of-type {
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
justify-content: center;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel .tableList .tableListHeader .numberOfItems {
|
||||
float: unset;
|
||||
max-width: unset;
|
||||
flex: unset;
|
||||
margin-right: 16px;
|
||||
}
|
||||
@@ -1,708 +0,0 @@
|
||||
import React, { useState, useEffect, useCallback } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import moment from 'moment';
|
||||
import { utils, log } from '@ohif/core';
|
||||
import { ScrollableArea, TableList, Icon } from '@ohif/ui';
|
||||
|
||||
import {
|
||||
BrushColorSelector,
|
||||
BrushRadius,
|
||||
SegmentationItem,
|
||||
SegmentItem,
|
||||
SegmentationSelect,
|
||||
} from '../index';
|
||||
|
||||
import './SegmentationPanel.css';
|
||||
import SegmentationSettings from '../SegmentationSettings/SegmentationSettings';
|
||||
|
||||
const { studyMetadataManager } = utils;
|
||||
|
||||
const refreshViewport = () => {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
};
|
||||
|
||||
/**
|
||||
* SegmentationPanel component
|
||||
*
|
||||
* @param {Array} props.studies - Studies data
|
||||
* @param {Array} props.viewports - Viewports data (viewportSpecificData)
|
||||
* @param {number} props.activeIndex - Active viewport index
|
||||
* @param {boolean} props.isOpen - Boolean that indicates if the panel is expanded
|
||||
* @param {Function} props.onSegmentItemClick - Segment click handler
|
||||
* @param {Function} props.onSegmentVisibilityChange - Segment visibiliy change handler
|
||||
* @param {Function} props.onConfigurationChange - Configuration change handler
|
||||
* @param {Function} props.activeContexts - List of active application contexts
|
||||
* @param {Function} props.contexts - List of available application contexts
|
||||
* @returns component
|
||||
*/
|
||||
const SegmentationPanel = ({
|
||||
studies,
|
||||
viewports,
|
||||
activeIndex,
|
||||
isOpen,
|
||||
onSegmentItemClick,
|
||||
onSegmentVisibilityChange,
|
||||
onConfigurationChange,
|
||||
onDisplaySetLoadFailure,
|
||||
onSelectedSegmentationChange,
|
||||
activeContexts,
|
||||
contexts,
|
||||
}) => {
|
||||
const isVTK = () => activeContexts.includes(contexts.VTK);
|
||||
const isCornerstone = () => activeContexts.includes(contexts.CORNERSTONE);
|
||||
|
||||
/*
|
||||
* TODO: wrap get/set interactions with the cornerstoneTools
|
||||
* store with context to make these kind of things less blurry.
|
||||
*/
|
||||
const { configuration } = cornerstoneTools.getModule('segmentation');
|
||||
const DEFAULT_BRUSH_RADIUS = configuration.radius || 10;
|
||||
|
||||
/*
|
||||
* TODO: We shouldn't hardcode brushColor color, in the future
|
||||
* the SEG may set the colorLUT to whatever it wants.
|
||||
*/
|
||||
const [state, setState] = useState({
|
||||
brushRadius: DEFAULT_BRUSH_RADIUS,
|
||||
brushColor: 'rgba(221, 85, 85, 1)',
|
||||
selectedSegment: null,
|
||||
selectedSegmentation: null,
|
||||
showSegmentationSettings: false,
|
||||
brushStackState: null,
|
||||
labelmapList: [],
|
||||
segmentList: [],
|
||||
cachedSegmentsProperties: [],
|
||||
isLoading: false,
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
const labelmapModifiedHandler = event => {
|
||||
log.warn('Segmentation Panel: labelmap modified', event);
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const firstImageId = studyMetadata.getFirstImageId(
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
updateState('brushStackState', module.state.series[firstImageId]);
|
||||
};
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on segs to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the segmentation panel
|
||||
* or other components that could rely on loaded segmentations that
|
||||
* the segments were loaded so that e.g. when the user opens the panel
|
||||
* before the segments are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new segments.
|
||||
*
|
||||
* This limitation is due to the fact that the cs segmentation module is an object (which will be
|
||||
* updated after the segments are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the segmentations loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
document.addEventListener(
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
|
||||
/*
|
||||
* These are specific to each element;
|
||||
* Need to iterate cornerstone-tools tracked enabled elements?
|
||||
* Then only care about the one tied to active viewport?
|
||||
*/
|
||||
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
|
||||
enabledElement.addEventListener(
|
||||
'cornerstonetoolslabelmapmodified',
|
||||
labelmapModifiedHandler
|
||||
)
|
||||
);
|
||||
|
||||
return () => {
|
||||
document.removeEventListener(
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
|
||||
enabledElement.removeEventListener(
|
||||
'cornerstonetoolslabelmapmodified',
|
||||
labelmapModifiedHandler
|
||||
)
|
||||
);
|
||||
};
|
||||
}, [activeIndex, viewports]);
|
||||
|
||||
const refreshSegmentations = useCallback(() => {
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const firstImageId = studyMetadata.getFirstImageId(
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
const brushStackState = module.state.series[firstImageId];
|
||||
if (brushStackState) {
|
||||
const labelmap3D =
|
||||
brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
|
||||
const labelmapList = getLabelmapList(
|
||||
brushStackState,
|
||||
firstImageId,
|
||||
activeViewport
|
||||
);
|
||||
const segmentList = getSegmentList(
|
||||
labelmap3D,
|
||||
firstImageId,
|
||||
brushStackState
|
||||
);
|
||||
setState(state => ({
|
||||
...state,
|
||||
brushStackState,
|
||||
selectedSegmentation: brushStackState.activeLabelmapIndex,
|
||||
labelmapList,
|
||||
segmentList,
|
||||
}));
|
||||
} else {
|
||||
setState(state => ({
|
||||
...state,
|
||||
labelmapList: [],
|
||||
segmentList: [],
|
||||
}));
|
||||
}
|
||||
}, [viewports, activeIndex, state.isLoading]);
|
||||
|
||||
useEffect(() => {
|
||||
refreshSegmentations();
|
||||
}, [
|
||||
viewports,
|
||||
activeIndex,
|
||||
state.selectedSegmentation,
|
||||
activeContexts,
|
||||
state.isLoading,
|
||||
]);
|
||||
|
||||
/* Handle open/closed panel behaviour */
|
||||
useEffect(() => {
|
||||
setState(state => ({
|
||||
...state,
|
||||
showSegmentationSettings: state.showSegmentationSettings && !isOpen,
|
||||
}));
|
||||
}, [isOpen]);
|
||||
|
||||
const getLabelmapList = useCallback(
|
||||
(brushStackState, firstImageId, activeViewport) => {
|
||||
/* Get list of SEG labelmaps specific to active viewport (reference series) */
|
||||
const referencedSegDisplaysets = _getReferencedSegDisplaysets(
|
||||
activeViewport.StudyInstanceUID,
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSegDisplaysets.map((displaySet, index) => {
|
||||
const { labelmapIndex, SeriesDate, SeriesTime } = displaySet;
|
||||
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const isActiveLabelmap =
|
||||
labelmapIndex === brushStackState.activeLabelmapIndex;
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayTime = date.format('h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
|
||||
return {
|
||||
value: labelmapIndex,
|
||||
title: displayDescription,
|
||||
description: displayDate,
|
||||
onClick: async () => {
|
||||
const activatedLabelmapIndex = await _setActiveLabelmap(
|
||||
activeViewport,
|
||||
studies,
|
||||
displaySet,
|
||||
firstImageId,
|
||||
brushStackState.activeLabelmapIndex,
|
||||
() => onSelectedSegmentationChange(),
|
||||
onDisplaySetLoadFailure
|
||||
);
|
||||
updateState('selectedSegmentation', activatedLabelmapIndex);
|
||||
},
|
||||
};
|
||||
});
|
||||
},
|
||||
[studies]
|
||||
);
|
||||
|
||||
const getSegmentList = useCallback(
|
||||
(labelmap3D, firstImageId, brushStackState) => {
|
||||
/*
|
||||
* Newly created segments have no `meta`
|
||||
* So we instead build a list of all segment indexes in use
|
||||
* Then find any associated metadata
|
||||
*/
|
||||
const uniqueSegmentIndexes = labelmap3D.labelmaps2D
|
||||
.reduce((acc, labelmap2D) => {
|
||||
if (labelmap2D) {
|
||||
const segmentIndexes = labelmap2D.segmentsOnLabelmap;
|
||||
|
||||
for (let i = 0; i < segmentIndexes.length; i++) {
|
||||
if (!acc.includes(segmentIndexes[i]) && segmentIndexes[i] !== 0) {
|
||||
acc.push(segmentIndexes[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return acc;
|
||||
}, [])
|
||||
.sort((a, b) => a - b);
|
||||
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const colorLutTable =
|
||||
module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const hasLabelmapMeta = labelmap3D.metadata && labelmap3D.metadata.data;
|
||||
|
||||
const segmentList = [];
|
||||
for (let i = 0; i < uniqueSegmentIndexes.length; i++) {
|
||||
const segmentIndex = uniqueSegmentIndexes[i];
|
||||
|
||||
const color = colorLutTable[segmentIndex];
|
||||
let segmentLabel = '(unlabeled)';
|
||||
let segmentNumber = segmentIndex;
|
||||
|
||||
/* Meta */
|
||||
if (hasLabelmapMeta) {
|
||||
const segmentMeta = labelmap3D.metadata.data[segmentIndex];
|
||||
|
||||
if (segmentMeta) {
|
||||
segmentNumber = segmentMeta.SegmentNumber;
|
||||
segmentLabel = segmentMeta.SegmentLabel;
|
||||
}
|
||||
}
|
||||
|
||||
const sameSegment = state.selectedSegment === segmentNumber;
|
||||
const setCurrentSelectedSegment = () => {
|
||||
_setActiveSegment(
|
||||
firstImageId,
|
||||
segmentNumber,
|
||||
labelmap3D.activeSegmentIndex
|
||||
);
|
||||
updateState('selectedSegment', sameSegment ? null : segmentNumber);
|
||||
|
||||
const validIndexList = [];
|
||||
labelmap3D.labelmaps2D.forEach((labelMap2D, index) => {
|
||||
if (labelMap2D.segmentsOnLabelmap.includes(segmentNumber)) {
|
||||
validIndexList.push(index);
|
||||
}
|
||||
});
|
||||
const avg = array => array.reduce((a, b) => a + b) / array.length;
|
||||
const average = avg(validIndexList);
|
||||
const closest = validIndexList.reduce((prev, curr) => {
|
||||
return Math.abs(curr - average) < Math.abs(prev - average)
|
||||
? curr
|
||||
: prev;
|
||||
});
|
||||
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
const imageId = imageIds[closest];
|
||||
const imageIndex = imageIds.indexOf(imageId);
|
||||
|
||||
const SOPInstanceUID = cornerstone.metaData.get(
|
||||
'SOPInstanceUID',
|
||||
imageId
|
||||
);
|
||||
const StudyInstanceUID = cornerstone.metaData.get(
|
||||
'StudyInstanceUID',
|
||||
imageId
|
||||
);
|
||||
|
||||
onSegmentItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
imageIndex,
|
||||
activeViewportIndex: activeIndex,
|
||||
});
|
||||
}
|
||||
|
||||
if (isVTK()) {
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const allDisplaySets = studyMetadata.getDisplaySets();
|
||||
const currentDisplaySet = allDisplaySets.find(
|
||||
displaySet =>
|
||||
displaySet.displaySetInstanceUID ===
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const frame = labelmap3D.labelmaps2D[closest];
|
||||
|
||||
onSegmentItemClick({
|
||||
studies,
|
||||
StudyInstanceUID: currentDisplaySet.StudyInstanceUID,
|
||||
displaySetInstanceUID: currentDisplaySet.displaySetInstanceUID,
|
||||
SOPClassUID: viewports[activeIndex].sopClassUIDs[0],
|
||||
SOPInstanceUID: currentDisplaySet.SOPInstanceUID,
|
||||
segmentNumber,
|
||||
imageIndex: closest,
|
||||
frame,
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
const isSegmentVisible = () => {
|
||||
return !labelmap3D.segmentsHidden[segmentIndex];
|
||||
};
|
||||
|
||||
const toggleSegmentVisibility = () => {
|
||||
const segmentsHidden = labelmap3D.segmentsHidden;
|
||||
segmentsHidden[segmentIndex] = !segmentsHidden[segmentIndex];
|
||||
return !segmentsHidden[segmentIndex];
|
||||
};
|
||||
|
||||
const cachedSegmentProperties =
|
||||
state.cachedSegmentsProperties[segmentNumber];
|
||||
let visible = isSegmentVisible();
|
||||
if (
|
||||
cachedSegmentProperties &&
|
||||
cachedSegmentProperties.visible !== visible
|
||||
) {
|
||||
toggleSegmentVisibility();
|
||||
}
|
||||
|
||||
segmentList.push(
|
||||
<SegmentItem
|
||||
key={segmentNumber}
|
||||
itemClass={`segment-item ${sameSegment && 'selected'}`}
|
||||
onClick={() => setCurrentSelectedSegment()}
|
||||
label={segmentLabel}
|
||||
index={segmentNumber}
|
||||
color={color}
|
||||
visible={visible}
|
||||
onVisibilityChange={newVisibility => {
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
module.setters.toggleSegmentVisibility(
|
||||
element,
|
||||
segmentNumber,
|
||||
brushStackState.activeLabelmapIndex
|
||||
);
|
||||
}
|
||||
|
||||
if (isVTK()) {
|
||||
onSegmentVisibilityChange(segmentNumber, newVisibility);
|
||||
}
|
||||
|
||||
updateCachedSegmentsProperties(segmentNumber, {
|
||||
visible: newVisibility,
|
||||
});
|
||||
refreshViewport();
|
||||
}}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
return segmentList;
|
||||
|
||||
/*
|
||||
* Let's iterate over segmentIndexes ^ above
|
||||
* If meta has a match, use it to show info
|
||||
* If now, add "no-meta" class
|
||||
* Show default name
|
||||
*/
|
||||
},
|
||||
[activeIndex, onSegmentItemClick, state.selectedSegment, state.isLoading]
|
||||
);
|
||||
|
||||
const updateCachedSegmentsProperties = (segmentNumber, properties) => {
|
||||
const segmentsProperties = state.cachedSegmentsProperties;
|
||||
const segmentProperties = state.cachedSegmentsProperties[segmentNumber];
|
||||
|
||||
segmentsProperties[segmentNumber] = segmentProperties
|
||||
? { ...segmentProperties, ...properties }
|
||||
: properties;
|
||||
|
||||
updateState('cachedSegmentsProperties', segmentsProperties);
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
updateState('cachedSegmentsProperties', []);
|
||||
}, [activeContexts]);
|
||||
|
||||
const updateState = (field, value) => {
|
||||
setState(state => ({ ...state, [field]: value }));
|
||||
};
|
||||
|
||||
const updateBrushSize = evt => {
|
||||
const updatedRadius = Number(evt.target.value);
|
||||
|
||||
if (updatedRadius !== brushRadius) {
|
||||
updateState('brushRadius', updatedRadius);
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
module.setters.radius(updatedRadius);
|
||||
}
|
||||
};
|
||||
|
||||
const decrementSegment = event => {
|
||||
event.preventDefault();
|
||||
if (labelmap3D.activeSegmentIndex > 1) {
|
||||
labelmap3D.activeSegmentIndex--;
|
||||
}
|
||||
updateState('selectedSegment', labelmap3D.activeSegmentIndex);
|
||||
updateActiveSegmentColor();
|
||||
};
|
||||
|
||||
const incrementSegment = event => {
|
||||
event.preventDefault();
|
||||
labelmap3D.activeSegmentIndex++;
|
||||
updateState('selectedSegment', labelmap3D.activeSegmentIndex);
|
||||
updateActiveSegmentColor();
|
||||
};
|
||||
|
||||
const updateActiveSegmentColor = () => {
|
||||
const color = getActiveSegmentColor();
|
||||
updateState('brushColor', color);
|
||||
};
|
||||
|
||||
const getActiveSegmentColor = () => {
|
||||
if (!state.brushStackState) {
|
||||
return 'rgba(255, 255, 255, 1)';
|
||||
}
|
||||
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const colorLutTable = module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const color = colorLutTable[labelmap3D.activeSegmentIndex];
|
||||
|
||||
return `rgba(${color.join(',')})`;
|
||||
};
|
||||
|
||||
const updateConfiguration = newConfiguration => {
|
||||
configuration.renderFill = newConfiguration.renderFill;
|
||||
configuration.renderOutline = newConfiguration.renderOutline;
|
||||
configuration.shouldRenderInactiveLabelmaps =
|
||||
newConfiguration.shouldRenderInactiveLabelmaps;
|
||||
configuration.fillAlpha = newConfiguration.fillAlpha;
|
||||
configuration.outlineAlpha = newConfiguration.outlineAlpha;
|
||||
configuration.outlineWidth = newConfiguration.outlineWidth;
|
||||
configuration.fillAlphaInactive = newConfiguration.fillAlphaInactive;
|
||||
configuration.outlineAlphaInactive = newConfiguration.outlineAlphaInactive;
|
||||
onConfigurationChange(newConfiguration);
|
||||
refreshViewport();
|
||||
};
|
||||
|
||||
const disabledConfigurationFields = [
|
||||
'outlineAlpha',
|
||||
'shouldRenderInactiveLabelmaps',
|
||||
];
|
||||
if (state.showSegmentationSettings) {
|
||||
return (
|
||||
<SegmentationSettings
|
||||
disabledFields={isVTK() ? disabledConfigurationFields : []}
|
||||
configuration={configuration}
|
||||
onBack={() => updateState('showSegmentationSettings', false)}
|
||||
onChange={updateConfiguration}
|
||||
/>
|
||||
);
|
||||
} else {
|
||||
return (
|
||||
<div className="dcmseg-segmentation-panel">
|
||||
<Icon
|
||||
className="cog-icon"
|
||||
name="cog"
|
||||
width="25px"
|
||||
height="25px"
|
||||
onClick={() => updateState('showSegmentationSettings', true)}
|
||||
/>
|
||||
{false && (
|
||||
<form className="selector-form">
|
||||
<BrushColorSelector
|
||||
defaultColor={brushColor}
|
||||
index={state.selectedSegment}
|
||||
onNext={incrementSegment}
|
||||
onPrev={decrementSegment}
|
||||
/>
|
||||
<BrushRadius
|
||||
value={brushRadius}
|
||||
onChange={updateBrushSize}
|
||||
min={configuration.minRadius}
|
||||
max={configuration.maxRadius}
|
||||
/>
|
||||
</form>
|
||||
)}
|
||||
<h3>Segmentations</h3>
|
||||
<div className="segmentations">
|
||||
<SegmentationSelect
|
||||
value={state.labelmapList.find(
|
||||
i => i.value === state.selectedSegmentation
|
||||
)}
|
||||
formatOptionLabel={SegmentationItem}
|
||||
options={state.labelmapList}
|
||||
/>
|
||||
</div>
|
||||
<ScrollableArea>
|
||||
<TableList
|
||||
customHeader={<SegmentsHeader count={state.segmentList.length} />}
|
||||
>
|
||||
{state.segmentList}
|
||||
</TableList>
|
||||
</ScrollableArea>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
};
|
||||
|
||||
SegmentationPanel.propTypes = {
|
||||
/*
|
||||
* An object, with int index keys?
|
||||
* Maps to: state.viewports.viewportSpecificData, in `viewer`
|
||||
* Passed in MODULE_TYPES.PANEL when specifying component in viewer
|
||||
*/
|
||||
viewports: PropTypes.shape({
|
||||
displaySetInstanceUID: PropTypes.string,
|
||||
frameRate: PropTypes.any,
|
||||
InstanceNumber: PropTypes.number,
|
||||
isMultiFrame: PropTypes.bool,
|
||||
isReconstructable: PropTypes.bool,
|
||||
Modality: PropTypes.string,
|
||||
plugin: PropTypes.string,
|
||||
SeriesDate: PropTypes.string,
|
||||
SeriesDescription: PropTypes.string,
|
||||
SeriesInstanceUID: PropTypes.string,
|
||||
SeriesNumber: PropTypes.any,
|
||||
SeriesTime: PropTypes.string,
|
||||
sopClassUIDs: PropTypes.arrayOf(PropTypes.string),
|
||||
StudyInstanceUID: PropTypes.string,
|
||||
}),
|
||||
activeIndex: PropTypes.number.isRequired,
|
||||
studies: PropTypes.array.isRequired,
|
||||
isOpen: PropTypes.bool.isRequired,
|
||||
};
|
||||
SegmentationPanel.defaultProps = {};
|
||||
|
||||
/**
|
||||
* Returns SEG Displaysets that reference the target series, sorted by dateTime
|
||||
*
|
||||
* @param {string} StudyInstanceUID
|
||||
* @param {string} SeriesInstanceUID
|
||||
* @returns Array
|
||||
*/
|
||||
const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
|
||||
/* Referenced DisplaySets */
|
||||
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
|
||||
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: SeriesInstanceUID,
|
||||
Modality: 'SEG',
|
||||
});
|
||||
|
||||
/* Sort */
|
||||
referencedDisplaysets.sort((a, b) => {
|
||||
const aNumber = Number(`${a.SeriesDate}${a.SeriesTime}`);
|
||||
const bNumber = Number(`${b.SeriesDate}${b.SeriesTime}`);
|
||||
return aNumber - bNumber;
|
||||
});
|
||||
|
||||
return referencedDisplaysets;
|
||||
};
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} viewportSpecificData
|
||||
* @param {*} studies
|
||||
* @param {*} displaySet
|
||||
* @param {*} firstImageId
|
||||
* @param {*} activeLabelmapIndex
|
||||
* @returns
|
||||
*/
|
||||
const _setActiveLabelmap = async (
|
||||
viewportSpecificData,
|
||||
studies,
|
||||
displaySet,
|
||||
firstImageId,
|
||||
activeLabelmapIndex,
|
||||
callback = () => { },
|
||||
onDisplaySetLoadFailure
|
||||
) => {
|
||||
if (displaySet.labelmapIndex === activeLabelmapIndex) {
|
||||
log.warn(`${activeLabelmapIndex} is already the active labelmap`);
|
||||
return displaySet.labelmapIndex;
|
||||
}
|
||||
|
||||
if (!displaySet.isLoaded) {
|
||||
// What props does this expect `viewportSpecificData` to have?
|
||||
// TODO: Should this return the `labelmapIndex`?
|
||||
|
||||
const loadPromise = displaySet.load(viewportSpecificData, studies);
|
||||
|
||||
loadPromise.catch(error => {
|
||||
onDisplaySetLoadFailure(error);
|
||||
|
||||
// Return old index.
|
||||
return activeLabelmapIndex;
|
||||
});
|
||||
|
||||
await loadPromise;
|
||||
}
|
||||
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
const brushStackState = state.series[firstImageId];
|
||||
brushStackState.activeLabelmapIndex = displaySet.labelmapIndex;
|
||||
|
||||
refreshViewport();
|
||||
|
||||
callback();
|
||||
|
||||
return displaySet.labelmapIndex;
|
||||
};
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {*} firstImageId
|
||||
* @param {*} activeSegmentIndex
|
||||
* @returns
|
||||
*/
|
||||
const _setActiveSegment = (firstImageId, segmentIndex, activeSegmentIndex) => {
|
||||
if (segmentIndex === activeSegmentIndex) {
|
||||
log.info(`${activeSegmentIndex} is already the active segment`);
|
||||
return;
|
||||
}
|
||||
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
const brushStackState = state.series[firstImageId];
|
||||
|
||||
const labelmap3D =
|
||||
brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
|
||||
labelmap3D.activeSegmentIndex = segmentIndex;
|
||||
|
||||
refreshViewport();
|
||||
|
||||
return segmentIndex;
|
||||
};
|
||||
|
||||
const SegmentsHeader = ({ count }) => {
|
||||
return (
|
||||
<React.Fragment>
|
||||
<div className="tableListHeaderTitle">Segments</div>
|
||||
<div className="numberOfItems">{count}</div>
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
export default SegmentationPanel;
|
||||
@@ -1,59 +0,0 @@
|
||||
import React from 'react';
|
||||
import Select from 'react-select';
|
||||
|
||||
const SegmentationSelect = ({ value, formatOptionLabel, options }) => (
|
||||
<Select
|
||||
value={value}
|
||||
formatOptionLabel={formatOptionLabel}
|
||||
styles={segmentationSelectStyles}
|
||||
options={options}
|
||||
/>
|
||||
);
|
||||
|
||||
const computedstyle = getComputedStyle(document.body);
|
||||
const uiGrayDarker = computedstyle.getPropertyValue('--ui-gray-darker');
|
||||
const activeColor = computedstyle.getPropertyValue('--active-color');
|
||||
const defaultColor = computedstyle.getPropertyValue('--default-color');
|
||||
const uiGrayDark = computedstyle.getPropertyValue('--ui-gray-dark');
|
||||
|
||||
const segmentationSelectStyles = {
|
||||
singleValue: (base, state) => ({
|
||||
...base,
|
||||
width: '100%',
|
||||
}),
|
||||
control: (base, state) => ({
|
||||
...base,
|
||||
cursor: 'pointer',
|
||||
background: uiGrayDarker,
|
||||
borderRadius: state.isFocused ? '5px 5px 5px 5px' : 5,
|
||||
borderColor: state.isFocused ? activeColor : defaultColor,
|
||||
boxShadow: state.isFocused ? null : null,
|
||||
minHeight: '50px',
|
||||
'&:hover': {
|
||||
borderColor: activeColor,
|
||||
},
|
||||
}),
|
||||
menu: base => ({
|
||||
...base,
|
||||
borderRadius: 5,
|
||||
background: uiGrayDarker,
|
||||
}),
|
||||
option: (base, state) => ({
|
||||
...base,
|
||||
cursor: 'pointer',
|
||||
'&:first-of-type': {
|
||||
borderTopLeftRadius: 5,
|
||||
borderTopRightRadius: 5,
|
||||
},
|
||||
'&:last-of-type': {
|
||||
borderBottomLeftRadius: 5,
|
||||
borderBottomRightRadius: 5,
|
||||
},
|
||||
background: state.isSelected ? uiGrayDark : uiGrayDarker,
|
||||
'&:hover': {
|
||||
background: uiGrayDark,
|
||||
},
|
||||
}),
|
||||
};
|
||||
|
||||
export default SegmentationSelect;
|
||||
-95
@@ -1,95 +0,0 @@
|
||||
.dcmseg-segmentation-settings {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
padding: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .range label {
|
||||
display: block;
|
||||
margin-bottom: 8px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-title {
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
padding-bottom: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-title h3 {
|
||||
color: var(--text-primary-color);
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
color: var(--text-primary-color);
|
||||
font-size: 12px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group .range {
|
||||
display: flex;
|
||||
padding: 20px 15px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group .range:not(:last-of-type) {
|
||||
padding-bottom: 0;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group .range label {
|
||||
margin: 0;
|
||||
display: unset;
|
||||
min-width: 40px;
|
||||
max-width: 40px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group .range input {
|
||||
width: 100%;
|
||||
padding: 0 20px 0 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .custom-check label {
|
||||
font-weight: bold;
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
border-bottom: 2px solid black;
|
||||
padding: 10px 15px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .custom-check input {
|
||||
width: 15px;
|
||||
height: 15px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .settings-group {
|
||||
background-color: var(--ui-gray-dark);
|
||||
border-radius: 5px;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .return-button {
|
||||
color: #333;
|
||||
background-color: #fff;
|
||||
padding: 4px 12px;
|
||||
line-height: 1.4;
|
||||
text-align: center;
|
||||
white-space: nowrap;
|
||||
vertical-align: middle;
|
||||
cursor: pointer;
|
||||
user-select: none;
|
||||
border: 1px solid #ccc;
|
||||
border-radius: 4px;
|
||||
transition: all 0.15s ease;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-settings .return-button:hover,
|
||||
.dcmseg-segmentation-settings .return-button:active,
|
||||
.dcmseg-segmentation-settings .return-button.active {
|
||||
background-color: var(--active-color);
|
||||
border-color: var(--ui-border-color-active);
|
||||
color: #fff;
|
||||
}
|
||||
-205
@@ -1,205 +0,0 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Range } from '@ohif/ui';
|
||||
|
||||
import './SegmentationSettings.css';
|
||||
|
||||
const SegmentationSettings = ({
|
||||
configuration,
|
||||
onBack,
|
||||
onChange,
|
||||
disabledFields = [],
|
||||
}) => {
|
||||
const [state, setState] = useState({
|
||||
renderFill: configuration.renderFill,
|
||||
renderOutline: configuration.renderOutline,
|
||||
shouldRenderInactiveLabelmaps: configuration.shouldRenderInactiveLabelmaps,
|
||||
fillAlpha: configuration.fillAlpha,
|
||||
outlineAlpha: configuration.outlineAlpha,
|
||||
outlineWidth: configuration.outlineWidth,
|
||||
fillAlphaInactive: configuration.fillAlphaInactive,
|
||||
outlineAlphaInactive: configuration.outlineAlphaInactive,
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
onChange(state);
|
||||
}, [state]);
|
||||
|
||||
const check = field => {
|
||||
setState(state => ({ ...state, [field]: !state[field] }));
|
||||
};
|
||||
|
||||
const save = (field, value) => {
|
||||
setState(state => ({ ...state, [field]: value }));
|
||||
};
|
||||
|
||||
const toFloat = value => parseFloat(value / 100).toFixed(2);
|
||||
|
||||
return (
|
||||
<div className="dcmseg-segmentation-settings">
|
||||
<div className="settings-title">
|
||||
<h3>Segmentations Settings</h3>
|
||||
<button className="return-button" onClick={onBack}>
|
||||
Back
|
||||
</button>
|
||||
</div>
|
||||
<div
|
||||
className="settings-group"
|
||||
style={{ marginBottom: state.renderFill ? 15 : 0 }}
|
||||
>
|
||||
<CustomCheck
|
||||
label="Segment Fill"
|
||||
checked={state.renderFill}
|
||||
onChange={() => check('renderFill')}
|
||||
/>
|
||||
{state.renderFill && (
|
||||
<CustomRange
|
||||
label="Opacity"
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
value={state.fillAlpha * 100}
|
||||
onChange={event => save('fillAlpha', toFloat(event.target.value))}
|
||||
showPercentage
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
<div
|
||||
className="settings-group"
|
||||
style={{ marginBottom: state.renderOutline ? 15 : 0 }}
|
||||
>
|
||||
<CustomCheck
|
||||
label="Segment Outline"
|
||||
checked={state.renderOutline}
|
||||
onChange={() => check('renderOutline')}
|
||||
/>
|
||||
{state.renderOutline && (
|
||||
<>
|
||||
{!disabledFields.includes('outlineAlpha') && (
|
||||
<CustomRange
|
||||
value={state.outlineAlpha * 100}
|
||||
label="Opacity"
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
onChange={event =>
|
||||
save('outlineAlpha', toFloat(event.target.value))
|
||||
}
|
||||
/>
|
||||
)}
|
||||
{!disabledFields.includes('outlineWidth') && (
|
||||
<CustomRange
|
||||
value={state.outlineWidth}
|
||||
label="Width"
|
||||
showValue
|
||||
step={1}
|
||||
min={0}
|
||||
max={5}
|
||||
onChange={event =>
|
||||
save('outlineWidth', parseInt(event.target.value))
|
||||
}
|
||||
/>
|
||||
)}
|
||||
</>
|
||||
)}
|
||||
</div>
|
||||
{(state.renderFill || state.renderOutline) &&
|
||||
!disabledFields.includes('shouldRenderInactiveLabelmaps') && (
|
||||
<div
|
||||
className="settings-group"
|
||||
style={{
|
||||
marginBottom: state.shouldRenderInactiveLabelmaps ? 15 : 0,
|
||||
}}
|
||||
>
|
||||
<CustomCheck
|
||||
label="Render inactive segmentations"
|
||||
checked={state.shouldRenderInactiveLabelmaps}
|
||||
onChange={() => check('shouldRenderInactiveLabelmaps')}
|
||||
/>
|
||||
{state.shouldRenderInactiveLabelmaps && (
|
||||
<>
|
||||
{state.renderFill &&
|
||||
!disabledFields.includes('fillAlphaInactive') && (
|
||||
<CustomRange
|
||||
label="Fill Opacity"
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
value={state.fillAlphaInactive * 100}
|
||||
onChange={event =>
|
||||
save('fillAlphaInactive', toFloat(event.target.value))
|
||||
}
|
||||
/>
|
||||
)}
|
||||
{state.renderOutline &&
|
||||
!disabledFields.includes('outlineAlphaInactive') && (
|
||||
<CustomRange
|
||||
label="Outline Opacity"
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
value={state.outlineAlphaInactive * 100}
|
||||
onChange={event =>
|
||||
save(
|
||||
'outlineAlphaInactive',
|
||||
toFloat(event.target.value)
|
||||
)
|
||||
}
|
||||
/>
|
||||
)}
|
||||
</>
|
||||
)}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
const CustomCheck = ({ label, checked, onChange }) => {
|
||||
return (
|
||||
<div className="custom-check">
|
||||
<label>
|
||||
<span>{label}</span>
|
||||
<input type="checkbox" checked={checked} onChange={onChange} />
|
||||
</label>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
const CustomRange = props => {
|
||||
const { label, onChange } = props;
|
||||
return (
|
||||
<div className="range">
|
||||
<label htmlFor="range">{label}</label>
|
||||
<Range
|
||||
{...props}
|
||||
onChange={event => {
|
||||
event.persist();
|
||||
onChange(event);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
SegmentationSettings.propTypes = {
|
||||
configuration: PropTypes.shape({
|
||||
renderFill: PropTypes.bool.isRequired,
|
||||
renderOutline: PropTypes.bool.isRequired,
|
||||
shouldRenderInactiveLabelmaps: PropTypes.bool.isRequired,
|
||||
fillAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number])
|
||||
.isRequired /* TODO: why fillAlpha is string? */,
|
||||
outlineAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number])
|
||||
.isRequired /* TODO: why fillAlpha is string? */,
|
||||
outlineWidth: PropTypes.number.isRequired,
|
||||
fillAlphaInactive: PropTypes.number.isRequired,
|
||||
outlineAlphaInactive: PropTypes.number.isRequired,
|
||||
}).isRequired,
|
||||
onBack: PropTypes.func.isRequired,
|
||||
onChange: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default SegmentationSettings;
|
||||
@@ -1,7 +0,0 @@
|
||||
export { default as BrushColorSelector } from './BrushColorSelector/BrushColorSelector';
|
||||
export { default as BrushRadius } from './BrushRadius/BrushRadius';
|
||||
export { default as SegmentationItem } from './SegmentationItem/SegmentationItem';
|
||||
export { default as SegmentationSettings } from './SegmentationSettings/SegmentationSettings';
|
||||
export { default as SegmentationPanel } from './SegmentationPanel/SegmentationPanel';
|
||||
export { default as SegmentItem } from './SegmentItem/SegmentItem';
|
||||
export { default as SegmentationSelect } from './SegmentationSelect';
|
||||
@@ -1,64 +0,0 @@
|
||||
import { MODULE_TYPES, utils } from '@ohif/core';
|
||||
import loadSegmentation from './loadSegmentation';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
DICOM_SEG: '1.2.840.10008.5.1.4.1.1.66.4',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
// TODO: Handle the case where there is more than one SOP Class Handler for the
|
||||
// same SOP Class.
|
||||
return {
|
||||
id: 'OHIFDicomSegSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries: function(
|
||||
series,
|
||||
study,
|
||||
dicomWebClient,
|
||||
authorizationHeaders
|
||||
) {
|
||||
const instance = series.getFirstInstance();
|
||||
const metadata = instance.getData().metadata;
|
||||
|
||||
const {
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
FrameOfReferenceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
} = metadata;
|
||||
|
||||
const segDisplaySet = {
|
||||
Modality: 'SEG',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
FrameOfReferenceUID,
|
||||
authorizationHeaders,
|
||||
metadata,
|
||||
isDerived: true,
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
};
|
||||
|
||||
segDisplaySet.load = function(referencedDisplaySet, studies) {
|
||||
return loadSegmentation(segDisplaySet, referencedDisplaySet, studies);
|
||||
};
|
||||
|
||||
return segDisplaySet;
|
||||
},
|
||||
};
|
||||
}
|
||||
@@ -1,119 +0,0 @@
|
||||
import React from 'react';
|
||||
|
||||
import init from './init.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
|
||||
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'com.ohif.dicom-segmentation',
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {object} [configuration={}]
|
||||
* @param {object|array} [configuration.csToolsConfig] - Passed directly to `initCornerstoneTools`
|
||||
*/
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getToolbarModule({ servicesManager }) {
|
||||
return toolbarModule;
|
||||
},
|
||||
getPanelModule({ commandsManager, api, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager;
|
||||
|
||||
const ExtendedSegmentationPanel = props => {
|
||||
const { activeContexts } = api.hooks.useAppContext();
|
||||
|
||||
const onDisplaySetLoadFailureHandler = error => {
|
||||
UINotificationService.show({
|
||||
title: 'DICOM Segmentation Loader',
|
||||
message: error.message,
|
||||
type: 'error',
|
||||
autoClose: false,
|
||||
});
|
||||
};
|
||||
|
||||
const segmentItemClickHandler = data => {
|
||||
commandsManager.runCommand('jumpToImage', data);
|
||||
commandsManager.runCommand('jumpToSlice', data);
|
||||
};
|
||||
|
||||
const onSegmentVisibilityChangeHandler = (segmentNumber, visible) => {
|
||||
commandsManager.runCommand('setSegmentConfiguration', {
|
||||
segmentNumber,
|
||||
visible,
|
||||
});
|
||||
};
|
||||
|
||||
const onConfigurationChangeHandler = configuration => {
|
||||
commandsManager.runCommand('setSegmentationConfiguration', {
|
||||
globalOpacity: configuration.fillAlpha,
|
||||
outlineThickness: configuration.outlineWidth,
|
||||
renderOutline: configuration.renderOutline,
|
||||
visible: configuration.renderFill,
|
||||
});
|
||||
};
|
||||
|
||||
const onSelectedSegmentationChangeHandler = () => {
|
||||
commandsManager.runCommand('requestNewSegmentation');
|
||||
};
|
||||
|
||||
return (
|
||||
<SegmentationPanel
|
||||
{...props}
|
||||
activeContexts={activeContexts}
|
||||
contexts={api.contexts}
|
||||
onSegmentItemClick={segmentItemClickHandler}
|
||||
onSegmentVisibilityChange={onSegmentVisibilityChangeHandler}
|
||||
onConfigurationChange={onConfigurationChangeHandler}
|
||||
onSelectedSegmentationChange={onSelectedSegmentationChangeHandler}
|
||||
onDisplaySetLoadFailure={onDisplaySetLoadFailureHandler}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'Segmentations',
|
||||
target: 'segmentation-panel',
|
||||
isDisabled: studies => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
|
||||
for (let i = 0; i < studies.length; i++) {
|
||||
const study = studies[i];
|
||||
|
||||
if (study && study.series) {
|
||||
for (let j = 0; j < study.series.length; j++) {
|
||||
const series = study.series[j];
|
||||
|
||||
if (series.Modality === 'SEG') {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
},
|
||||
},
|
||||
],
|
||||
components: [
|
||||
{
|
||||
id: 'segmentation-panel',
|
||||
component: ExtendedSegmentationPanel,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
},
|
||||
getSopClassHandlerModule,
|
||||
};
|
||||
@@ -1,20 +0,0 @@
|
||||
import csTools from 'cornerstone-tools';
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {object} configuration
|
||||
* @param {Object|Array} configuration.csToolsConfig
|
||||
*/
|
||||
export default function init({ servicesManager, configuration = {} }) {
|
||||
const { BrushTool, SphericalBrushTool, CorrectionScissorsTool } = csTools;
|
||||
const tools = [BrushTool, SphericalBrushTool, CorrectionScissorsTool];
|
||||
|
||||
tools.forEach(tool => csTools.addTool(tool));
|
||||
|
||||
csTools.addTool(BrushTool, {
|
||||
name: 'BrushEraser',
|
||||
configuration: {
|
||||
alwaysEraseOnClick: true,
|
||||
},
|
||||
});
|
||||
}
|
||||
@@ -1,208 +0,0 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import dcmjs from 'dcmjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
|
||||
const { DicomLoaderService } = OHIF.utils;
|
||||
|
||||
export default async function loadSegmentation(
|
||||
segDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies
|
||||
) {
|
||||
const { StudyInstanceUID } = referencedDisplaySet;
|
||||
|
||||
// Set here is loading is asynchronous.
|
||||
// If this function throws its set back to false.
|
||||
segDisplaySet.isLoaded = true;
|
||||
|
||||
const segArrayBuffer = await DicomLoaderService.findDicomDataPromise(
|
||||
segDisplaySet,
|
||||
studies
|
||||
);
|
||||
|
||||
const dicomData = dcmjs.data.DicomMessage.readFile(segArrayBuffer);
|
||||
const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
|
||||
dicomData.dict
|
||||
);
|
||||
|
||||
dataset._meta = dcmjs.data.DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
|
||||
const imageIds = _getImageIdsForDisplaySet(
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
referencedDisplaySet.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
let results;
|
||||
|
||||
try {
|
||||
results = _parseSeg(segArrayBuffer, imageIds);
|
||||
} catch (error) {
|
||||
segDisplaySet.isLoaded = false;
|
||||
reject(error);
|
||||
}
|
||||
|
||||
const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
|
||||
const { setters } = cornerstoneTools.getModule('segmentation');
|
||||
|
||||
// TODO: Could define a color LUT based on colors in the SEG.
|
||||
const labelmapIndex = _getNextLabelmapIndex(imageIds[0]);
|
||||
const colorLUTIndex = _makeColorLUTAndGetIndex(segMetadata);
|
||||
|
||||
setters.labelmap3DByFirstImageId(
|
||||
imageIds[0],
|
||||
labelmapBuffer,
|
||||
labelmapIndex,
|
||||
segMetadata,
|
||||
imageIds.length,
|
||||
segmentsOnFrame,
|
||||
colorLUTIndex
|
||||
);
|
||||
|
||||
segDisplaySet.labelmapIndex = labelmapIndex;
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on segs to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the segmentation panel
|
||||
* or other components that could rely on loaded segmentations that
|
||||
* the segments were loaded so that e.g. when the user opens the panel
|
||||
* before the segments are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new segments.
|
||||
*
|
||||
* This limitation is due to the fact that the cs segmentation module is an object (which will be
|
||||
* updated after the segments are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the segmentations loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
console.log('Segmentation loaded.');
|
||||
const event = new CustomEvent('extensiondicomsegmentationsegloaded');
|
||||
document.dispatchEvent(event);
|
||||
|
||||
resolve(labelmapIndex);
|
||||
});
|
||||
}
|
||||
|
||||
function _getNextLabelmapIndex(firstImageId) {
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
const brushStackState = state.series[firstImageId];
|
||||
|
||||
let labelmapIndex = 0;
|
||||
|
||||
if (brushStackState) {
|
||||
const { labelmaps3D } = brushStackState;
|
||||
labelmapIndex = labelmaps3D.length;
|
||||
|
||||
for (let i = 0; i < labelmaps3D.length; i++) {
|
||||
if (!labelmaps3D[i]) {
|
||||
labelmapIndex = i;
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return labelmapIndex;
|
||||
}
|
||||
|
||||
function _makeColorLUTAndGetIndex(segMetadata) {
|
||||
const { setters, state } = cornerstoneTools.getModule('segmentation');
|
||||
const { colorLutTables } = state;
|
||||
const colorLUTIndex = _getNextColorLUTIndex();
|
||||
|
||||
const { data } = segMetadata;
|
||||
|
||||
if (
|
||||
!data.some(
|
||||
segment =>
|
||||
segment &&
|
||||
(segment.ROIDisplayColor || segment.RecommendedDisplayCIELabValue)
|
||||
)
|
||||
) {
|
||||
// Use default cornerstoneTools colorLUT.
|
||||
return 0;
|
||||
}
|
||||
|
||||
const colorLUT = [];
|
||||
|
||||
for (let i = 0; i < data.length; i++) {
|
||||
const segment = data[i];
|
||||
if (!segment) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const { ROIDisplayColor, RecommendedDisplayCIELabValue } = segment;
|
||||
|
||||
if (RecommendedDisplayCIELabValue) {
|
||||
const rgb = dcmjs.data.Colors.dicomlab2RGB(
|
||||
RecommendedDisplayCIELabValue
|
||||
).map(x => Math.round(x * 255));
|
||||
|
||||
colorLUT[i] = [...rgb, 255];
|
||||
} else if (ROIDisplayColor) {
|
||||
colorLUT[i] = [...ROIDisplayColor, 255];
|
||||
} else {
|
||||
colorLUT[i] = [...colorLutTables[0][i]];
|
||||
}
|
||||
}
|
||||
|
||||
colorLUT.shift();
|
||||
setters.colorLUT(colorLUTIndex, colorLUT);
|
||||
|
||||
return colorLUTIndex;
|
||||
}
|
||||
|
||||
function _getNextColorLUTIndex() {
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
const { colorLutTables } = state;
|
||||
|
||||
let colorLUTIndex = colorLutTables.length;
|
||||
|
||||
for (let i = 0; i < colorLutTables.length; i++) {
|
||||
if (!colorLutTables[i]) {
|
||||
colorLUTIndex = i;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return colorLUTIndex;
|
||||
}
|
||||
|
||||
function _parseSeg(arrayBuffer, imageIds) {
|
||||
return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
|
||||
imageIds,
|
||||
arrayBuffer,
|
||||
cornerstone.metaData
|
||||
);
|
||||
}
|
||||
|
||||
function _getImageIdsForDisplaySet(
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID
|
||||
) {
|
||||
const study = studies.find(
|
||||
study => study.StudyInstanceUID === StudyInstanceUID
|
||||
);
|
||||
|
||||
const displaySets = study.displaySets.filter(displaySet => {
|
||||
return displaySet.SeriesInstanceUID === SeriesInstanceUID;
|
||||
});
|
||||
|
||||
if (displaySets.length > 1) {
|
||||
console.warn(
|
||||
'More than one display set with the same SeriesInstanceUID. This is not supported yet...'
|
||||
);
|
||||
// TODO -> We could make check the instance list and see if any match?
|
||||
// Do we split the segmentation into two cornerstoneTools segmentations if there are images in both series?
|
||||
// ^ Will that even happen?
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySets[0];
|
||||
|
||||
return referencedDisplaySet.images.map(image => image.getImageId());
|
||||
}
|
||||
@@ -1,60 +0,0 @@
|
||||
/* TODO: Creation tools (future release).
|
||||
|
||||
const TOOLBAR_BUTTON_TYPES = {
|
||||
COMMAND: 'command',
|
||||
SET_TOOL_ACTIVE: 'setToolActive',
|
||||
BUILT_IN: 'builtIn',
|
||||
};
|
||||
|
||||
*/
|
||||
|
||||
const definitions = []; /* TODO: Creation tools (future release). [
|
||||
{
|
||||
id: 'SegDropdown',
|
||||
label: 'Segmentation',
|
||||
icon: 'ellipse-circle',
|
||||
buttons: [
|
||||
{
|
||||
id: 'Brush',
|
||||
label: 'Brush',
|
||||
icon: 'brush',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'Brush' },
|
||||
},
|
||||
{
|
||||
id: 'SphericalBrush',
|
||||
label: 'Spherical',
|
||||
icon: 'sphere',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'SphericalBrush' },
|
||||
},
|
||||
{
|
||||
id: 'CorrectionScissors',
|
||||
label: 'Correction Scissors',
|
||||
icon: 'scissors',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'CorrectionScissors' },
|
||||
},
|
||||
{
|
||||
id: 'BrushEraser',
|
||||
label: 'Eraser',
|
||||
icon: 'trash',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'BrushEraser' },
|
||||
},
|
||||
],
|
||||
},
|
||||
]; */
|
||||
|
||||
export default {
|
||||
definitions,
|
||||
defaultContext: 'ACTIVE_VIEWPORT::CORNERSTONE',
|
||||
};
|
||||
@@ -30,7 +30,7 @@ module.exports = (env, argv) => {
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtCornerstone',
|
||||
library: 'OHIFExtDICOMSR',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
|
||||
@@ -1,121 +0,0 @@
|
||||
# @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
This extension adds support for viewing and manipulating 2D medical images via a
|
||||
viewport. The underlying implementation wraps the
|
||||
`cornerstonejs/react-cornerstone-viewport`, and provides basic commands and
|
||||
toolbar buttons for common actions.
|
||||
|
||||
<!-- TODO: Simple image or GIF? -->
|
||||
|
||||
#### Index
|
||||
|
||||
Extension Id: `cornerstone`
|
||||
|
||||
- [Commands Module](#commands-module)
|
||||
- [Toolbar Module](#toolbar-module)
|
||||
- [Viewport Module](#viewport-module)
|
||||
|
||||
## Commands Module
|
||||
|
||||
This extensions includes the following `Commands` and `Command Definitions`.
|
||||
These can be registered with `@ohif/core`'s `CommandManager`. After registering
|
||||
the commands, they can be bound to `hotkeys` using the `HotkeysManager` and
|
||||
listed in the `UserPreferences` modal.
|
||||
|
||||
You can read more about [`Commands`][docs-commands], [`Hotkeys`][docs-hotkeys],
|
||||
and the [`UserPreferences` Modal][docs-userprefs] in their respective locations
|
||||
in the OHIF Viewer's documentation.
|
||||
|
||||
| Command Name | Description | Store Contexts |
|
||||
| ---------------------------- | --------------------------------------- | -------------- |
|
||||
| `rotateViewportCW` | | viewports |
|
||||
| `rotateViewportCCW` | | viewports |
|
||||
| `invertViewport` | | viewports |
|
||||
| `flipViewportVertical` | | viewports |
|
||||
| `flipViewportHorizontal` | | viewports |
|
||||
| `scaleUpViewport` | | viewports |
|
||||
| `scaleDownViewport` | | viewports |
|
||||
| `fitViewportToWindow` | | viewports |
|
||||
| `resetViewport` | | viewports |
|
||||
| clearAnnotations | TODO | |
|
||||
| next/previous Image | TODO | |
|
||||
| first/last Image | TODO | |
|
||||
| `nextViewportDisplaySet` | | |
|
||||
| `previousViewportDisplaySet` | | |
|
||||
| `setToolActive` | Activates tool for primary button/touch | |
|
||||
|
||||
## Toolbar Module
|
||||
|
||||
Our toolbar module contains definitions for:
|
||||
|
||||
- `StackScroll`
|
||||
- `Zoom`
|
||||
- `Wwwc`
|
||||
- `Pan`
|
||||
- `Length`
|
||||
- `Angle`
|
||||
- `Reset`
|
||||
- `Cine`
|
||||
|
||||
All use the `ACTIVE_VIEWPORT::CORNERSTONE` context.
|
||||
|
||||
## Viewport Module
|
||||
|
||||
Our Viewport wraps [cornerstonejs/react-cornerstone-viewport][react-viewport]
|
||||
and is connected the redux store. This module is the most prone to change as we
|
||||
hammer out our Viewport interface.
|
||||
|
||||
## Tool Configuration
|
||||
|
||||
Tools can be configured through extension configuration using the tools key:
|
||||
|
||||
```js
|
||||
...
|
||||
cornerstoneExtensionConfig: {
|
||||
tools: {
|
||||
ArrowAnnotate: {
|
||||
configuration: {
|
||||
getTextCallback: (callback, eventDetails) => callback(prompt('Enter your custom annotation')),
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
...
|
||||
```
|
||||
|
||||
## Annotate Tools Configuration
|
||||
|
||||
*We currently support one property for annotation tools.*
|
||||
|
||||
### Hide handles
|
||||
This extension configuration allows you to toggle on/off handle rendering for all annotate tools:
|
||||
|
||||
```js
|
||||
...
|
||||
cornerstoneExtensionConfig: {
|
||||
hideHandles: true,
|
||||
},
|
||||
...
|
||||
|
||||
## Resources
|
||||
|
||||
### Repositories
|
||||
|
||||
- [cornerstonejs/react-cornerstone-viewport][react-viewport]
|
||||
- [cornerstonejs/cornerstoneTools][cornerstone-tools]
|
||||
- [cornerstonejs/cornerstone][cornerstone]
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[docs-commands]: https://www.com
|
||||
[docs-hotkeys]: https://www.com
|
||||
[docs-userprefs]: htt
|
||||
[react-viewport]: https://github.com/cornerstonejs/react-cornerstone-viewport
|
||||
[cornerstone-tools]: https://github.com/cornerstonejs/cornerstoneTools
|
||||
[cornerstone]: https://github.com/cornerstonejs/cornerstone
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -26,7 +26,7 @@
|
||||
"build:package": "yarn run build",
|
||||
"start": "yarn run dev",
|
||||
"test:unit": "jest --watchAll",
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage"
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
@@ -40,16 +40,10 @@
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.11.0",
|
||||
"react-dom": "^16.11.0",
|
||||
"react-redux": "^6.0.0",
|
||||
"react-resize-detector": "^3.4.0",
|
||||
"redux": "^4.0.1"
|
||||
"react-cornerstone-viewport": "4.0.2"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.7.6",
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-cornerstone-viewport": "4.0.2"
|
||||
"classnames": "^2.2.6"
|
||||
}
|
||||
}
|
||||
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