chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272)

extensions/dicom-microscopy/src/DicomMicroscopySopClassHandler.js

@@ -1,29 +0,0 @@
-import OHIF from '@ohif/core';
-
-const { utils } = OHIF;
-
-const SOP_CLASS_UIDS = {
-  VL_WHOLE_SLIDE_MICROSCOPY_IMAGE_STORAGE: '1.2.840.10008.5.1.4.1.1.77.1.6',
-};
-
-const DicomMicroscopySopClassHandler = {
-  id: 'DicomMicroscopySopClassHandlerPlugin',
-  sopClassUIDs: [SOP_CLASS_UIDS.VL_WHOLE_SLIDE_MICROSCOPY_IMAGE_STORAGE],
-  getDisplaySetFromSeries(series, study, dicomWebClient) {
-    const instance = series.getFirstInstance();
-
-    // Note: We are passing the dicomweb client into each viewport!
-
-    return {
-      plugin: 'microscopy',
-      Modality: 'SM',
-      displaySetInstanceUID: utils.guid(),
-      dicomWebClient,
-      SOPInstanceUID: instance.getSOPInstanceUID(),
-      SeriesInstanceUID: series.getSeriesInstanceUID(),
-      StudyInstanceUID: study.getStudyInstanceUID(),
-    };
-  },
-};
-
-export default DicomMicroscopySopClassHandler;

extensions/dicom-microscopy/src/DicomMicroscopyViewport.js

@@ -1,106 +0,0 @@
-import React, { Component } from 'react';
-import ReactResizeDetector from 'react-resize-detector';
-import debounce from 'lodash.debounce';
-
-class DicomMicroscopyViewport extends Component {
-  state = {
-    error: null,
-  };
-
-  viewer = null;
-
-  constructor(props) {
-    super(props);
-
-    this.container = React.createRef();
-
-    this.debouncedResize = debounce(() => {
-      if (this.viewer) this.viewer.resize();
-    }, 100);
-  }
-
-  // install the microscopy renderer into the web page.
-  // you should only do this once.
-  installOpenLayersRenderer(container, displaySet) {
-    const dicomWebClient = displaySet.dicomWebClient;
-
-    const searchInstanceOptions = {
-      studyInstanceUID: displaySet.StudyInstanceUID,
-      seriesInstanceUID: displaySet.SeriesInstanceUID,
-    };
-
-    dicomWebClient
-      .searchForInstances(searchInstanceOptions)
-      .then(instances => {
-        const promises = [];
-        for (let i = 0; i < instances.length; i++) {
-          const sopInstanceUID = instances[i]['00080018']['Value'][0];
-
-          const retrieveInstanceOptions = {
-            studyInstanceUID: displaySet.StudyInstanceUID,
-            seriesInstanceUID: displaySet.SeriesInstanceUID,
-            sopInstanceUID,
-          };
-
-          const promise = dicomWebClient
-            .retrieveInstanceMetadata(retrieveInstanceOptions)
-            .then(metadata => {
-              const ImageType = metadata[0]['00080008']['Value'];
-              if (ImageType[2] === 'VOLUME') {
-                return metadata[0];
-              }
-            });
-          promises.push(promise);
-        }
-        return Promise.all(promises);
-      })
-      .then(async metadata => {
-        metadata = metadata.filter(m => m);
-
-        const { api } = await import(
-          /* webpackChunkName: "dicom-microscopy-viewer" */ 'dicom-microscopy-viewer'
-        );
-        const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
-
-        this.viewer = new microscopyViewer({
-          client: dicomWebClient,
-          metadata,
-          retrieveRendered: false,
-        });
-
-        this.viewer.render({ container });
-      });
-  }
-
-  componentDidMount() {
-    const { displaySet } = this.props.viewportData;
-
-    this.installOpenLayersRenderer(this.container.current, displaySet);
-  }
-
-  render() {
-    const style = { width: '100%', height: '100%' };
-    return (
-      <div className={'DicomMicroscopyViewer'} style={style}>
-        {ReactResizeDetector && (
-          <ReactResizeDetector
-            handleWidth
-            handleHeight
-            onResize={this.onWindowResize}
-          />
-        )}
-        {this.state.error ? (
-          <h2>{JSON.stringify(this.state.error)}</h2>
-        ) : (
-          <div style={style} ref={this.container} />
-        )}
-      </div>
-    );
-  }
-
-  onWindowResize = () => {
-    this.debouncedResize();
-  };
-}
-
-export default DicomMicroscopyViewport;

extensions/dicom-microscopy/src/index.js

@@ -1,28 +0,0 @@
-import React from 'react';
-import DicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler.js';
-
-const Component = React.lazy(() => {
-  return import('./DicomMicroscopyViewport');
-});
-
-const DicomMicroscopyViewport = props => {
-  return (
-    <React.Suspense fallback={<div>Loading...</div>}>
-      <Component {...props} />
-    </React.Suspense>
-  );
-};
-
-export default {
-  /**
-   * Only required property. Should be a unique value across all extensions.
-   */
-  id: 'microscopy',
-
-  getViewportModule() {
-    return DicomMicroscopyViewport;
-  },
-  getSopClassHandlerModule() {
-    return DicomMicroscopySopClassHandler;
-  },
-};