feat(custom displayOptions): add custom options to every level of hp (#3372)
* feat(custom displayOptions): add custom options to every level of hanging protocols * move set preset down to cornerstone3d * works * fix tmtv based on new api * fix unit test * close * review1 * upgrade packages * update packages * apply review comments * recursive call * less copy * apply review comments * fix e2e tests * apply review comments * revert * apply review comments * apply review comments --------- Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
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AlirezaandBill Wallace authored and GitHub committed
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@@ -14,7 +14,6 @@ import { Types as OhifTypes } from '@ohif/core';
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import CornerstoneViewportDownloadForm from './utils/CornerstoneViewportDownloadForm';
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import callInputDialog from './utils/callInputDialog';
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import { setColormap } from './utils/colormap/transferFunctionHelpers';
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import toggleStackImageSync from './utils/stackSync/toggleStackImageSync';
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import { getFirstAnnotationSelected } from './utils/measurementServiceMappings/utils/selection';
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import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement';
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@@ -556,9 +555,9 @@ function commandsModule({
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return actorEntry.uid.includes(displaySetInstanceUID);
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});
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const { actor: volumeActor } = actorEntry;
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const { actor: volumeActor, uid: volumeId } = actorEntry;
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setColormap(volumeActor, colormap);
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viewport.setProperties({ colormap, volumeActor }, volumeId);
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if (immediate) {
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viewport.render();
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@@ -315,7 +315,7 @@ function DicomUploadProgress({
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className="ml-auto"
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onClick={onComplete}
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>
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{'Open Viewer'}
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{'Close'}
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</Button>
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</>
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) : (
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@@ -245,7 +245,7 @@ const mprAnd3DVolumeViewport = {
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{
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id: 'mprDisplaySet',
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options: {
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presetName: 'CT-Bone',
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displayPreset: 'CT-Bone',
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},
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},
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],
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@@ -121,7 +121,6 @@ const cornerstoneExtension: Types.Extensions.Extension = {
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},
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getEnabledElement,
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dicomLoaderService,
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registerColormap,
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},
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},
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{
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@@ -30,10 +30,6 @@ import {
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VolumeViewportData,
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} from '../../types/CornerstoneCacheService';
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import { Presentation, Presentations } from '../../types/Presentation';
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import {
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setColormap,
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setLowerUpperColorTransferFunction,
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} from '../../utils/colormap/transferFunctionHelpers';
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import JumpPresets from '../../utils/JumpPresets';
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@@ -525,16 +521,9 @@ class CornerstoneViewportService extends PubSubService
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const displaySetOptions = displaySetOptionsArray[index];
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const { volumeId } = volume;
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const voiCallbacks = this._getVOICallbacks(volumeId, displaySetOptions);
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const callback = ({ volumeActor }) => {
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voiCallbacks.forEach(callback => callback(volumeActor));
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};
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volumeInputArray.push({
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imageIds,
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volumeId,
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callback,
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blendMode: displaySetOptions.blendMode,
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slabThickness: this._getSlabThickness(displaySetOptions, volumeId),
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});
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@@ -577,7 +566,44 @@ class CornerstoneViewportService extends PubSubService
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toolGroupService,
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} = this.servicesManager.services;
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const viewportInfo = this.getViewportInfo(viewport.id);
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const displaySetOptions = viewportInfo.getDisplaySetOptions();
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// Todo: use presentations states
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const volumesProperties = volumeInputArray.map((volumeInput, index) => {
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const { volumeId } = volumeInput;
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const displaySetOption = displaySetOptions[index];
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const { voi, voiInverted, colormap, displayPreset } = displaySetOption;
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const properties = {};
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if (voi && (voi.windowWidth || voi.windowCenter)) {
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const { lower, upper } = csUtils.windowLevel.toLowHighRange(
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voi.windowWidth,
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voi.windowCenter
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);
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properties.voiRange = { lower, upper };
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}
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if (voiInverted !== undefined) {
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properties.invert = voiInverted;
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}
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if (colormap !== undefined) {
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properties.colormap = colormap;
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}
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if (displayPreset !== undefined) {
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properties.preset = displayPreset;
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}
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return { properties, volumeId };
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});
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await viewport.setVolumes(volumeInputArray);
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volumesProperties.forEach(({ properties, volumeId }) => {
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viewport.setProperties(properties, volumeId);
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});
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this.setPresentations(viewport, presentations);
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// load any secondary displaySets
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@@ -602,7 +628,6 @@ class CornerstoneViewportService extends PubSubService
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);
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}
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const viewportInfo = this.getViewportInfo(viewport.id);
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const toolGroup = toolGroupService.getToolGroupForViewport(viewport.id);
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csToolsUtils.segmentation.triggerSegmentationRender(toolGroup.id);
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@@ -737,50 +762,6 @@ class CornerstoneViewportService extends PubSubService
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}
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}
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_getVOICallbacks(volumeId, displaySetOptions) {
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const {
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voi,
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voiInverted: inverted,
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colormap,
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presetName,
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} = displaySetOptions;
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const voiCallbackArray = [];
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// If colormap is set, use it to set the color transfer function
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if (colormap) {
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voiCallbackArray.push(volumeActor => setColormap(volumeActor, colormap));
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}
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if (voi instanceof Object && voi.windowWidth && voi.windowCenter) {
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const { windowWidth, windowCenter } = voi;
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const { lower, upper } = csUtils.windowLevel.toLowHighRange(
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windowWidth,
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windowCenter
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);
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voiCallbackArray.push(volumeActor =>
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setLowerUpperColorTransferFunction({
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volumeActor,
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lower,
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upper,
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inverted,
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})
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);
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}
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if (presetName) {
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voiCallbackArray.push(volumeActor => {
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utilities.applyPreset(
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volumeActor,
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CONSTANTS.VIEWPORT_PRESETS.find(preset => {
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return preset.name === presetName;
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})
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);
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});
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}
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return voiCallbackArray;
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}
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_setDisplaySets(
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viewport: StackViewport | VolumeViewport,
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viewportData: StackViewportData | VolumeViewportData,
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@@ -63,7 +63,7 @@ export type PublicDisplaySetOptions = {
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blendMode?: string;
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slabThickness?: number;
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colormap?: string;
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presetName?: string;
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displayPreset?: string;
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};
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export type DisplaySetOptions = {
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@@ -73,7 +73,7 @@ export type DisplaySetOptions = {
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blendMode?: Enums.BlendModes;
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slabThickness?: number;
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colormap?: string;
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presetName?: string;
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displayPreset?: string;
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};
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type VOI = {
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@@ -315,7 +315,7 @@ class ViewportInfo {
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colormap: option.colormap,
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slabThickness: option.slabThickness,
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blendMode,
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presetName: option.presetName,
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displayPreset: option.displayPreset,
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});
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});
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@@ -1,139 +0,0 @@
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import vtkColorTransferFunction from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction';
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import vtkPiecewiseFunction from '@kitware/vtk.js/Common/DataModel/PiecewiseFunction';
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import presets from './presets';
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// get preset from preset name
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function getPreset(name) {
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return presets.find(preset => preset.name === name);
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}
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// Todo: we should be able to register a new preset via the utilityModule
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// of the cornerstone extension
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export default function applyPreset(actor, presetName) {
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const preset = getPreset(presetName);
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// Create color transfer function
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const colorTransferArray = preset.colorTransfer
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.split(' ')
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.splice(1)
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.map(parseFloat);
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const { shiftRange } = getShiftRange(colorTransferArray);
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let min = shiftRange[0];
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const width = shiftRange[1] - shiftRange[0];
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const cfun = vtkColorTransferFunction.newInstance();
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const normColorTransferValuePoints = [];
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for (let i = 0; i < colorTransferArray.length; i += 4) {
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let value = colorTransferArray[i];
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const r = colorTransferArray[i + 1];
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const g = colorTransferArray[i + 2];
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const b = colorTransferArray[i + 3];
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value = (value - min) / width;
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normColorTransferValuePoints.push([value, r, g, b]);
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}
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applyPointsToRGBFunction(normColorTransferValuePoints, shiftRange, cfun);
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actor.getProperty().setRGBTransferFunction(0, cfun);
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// Create scalar opacity function
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const scalarOpacityArray = preset.scalarOpacity
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.split(' ')
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.splice(1)
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.map(parseFloat);
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const ofun = vtkPiecewiseFunction.newInstance();
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const normPoints = [];
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for (let i = 0; i < scalarOpacityArray.length; i += 2) {
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let value = scalarOpacityArray[i];
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const opacity = scalarOpacityArray[i + 1];
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value = (value - min) / width;
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normPoints.push([value, opacity]);
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}
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applyPointsToPiecewiseFunction(normPoints, shiftRange, ofun);
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actor.getProperty().setScalarOpacity(0, ofun);
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const [
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gradientMinValue,
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gradientMinOpacity,
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gradientMaxValue,
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gradientMaxOpacity,
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] = preset.gradientOpacity
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.split(' ')
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.splice(1)
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.map(parseFloat);
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actor.getProperty().setUseGradientOpacity(0, true);
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actor.getProperty().setGradientOpacityMinimumValue(0, gradientMinValue);
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actor.getProperty().setGradientOpacityMinimumOpacity(0, gradientMinOpacity);
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actor.getProperty().setGradientOpacityMaximumValue(0, gradientMaxValue);
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actor.getProperty().setGradientOpacityMaximumOpacity(0, gradientMaxOpacity);
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if (preset.interpolation === '1') {
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actor.getProperty().setInterpolationTypeToFastLinear();
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//actor.getProperty().setInterpolationTypeToLinear()
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}
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const ambient = parseFloat(preset.ambient);
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//const shade = preset.shade === '1'
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const diffuse = parseFloat(preset.diffuse);
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const specular = parseFloat(preset.specular);
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const specularPower = parseFloat(preset.specularPower);
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//actor.getProperty().setShade(shade)
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actor.getProperty().setAmbient(ambient);
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actor.getProperty().setDiffuse(diffuse);
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actor.getProperty().setSpecular(specular);
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actor.getProperty().setSpecularPower(specularPower);
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}
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function getShiftRange(colorTransferArray) {
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// Credit to paraview-glance
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// https://github.com/Kitware/paraview-glance/blob/3fec8eeff31e9c19ad5b6bff8e7159bd745e2ba9/src/components/controls/ColorBy/script.js#L133
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// shift range is original rgb/opacity range centered around 0
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let min = Infinity;
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let max = -Infinity;
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for (let i = 0; i < colorTransferArray.length; i += 4) {
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min = Math.min(min, colorTransferArray[i]);
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max = Math.max(max, colorTransferArray[i]);
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}
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const center = (max - min) / 2;
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return {
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shiftRange: [-center, center],
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min,
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max,
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};
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}
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function applyPointsToRGBFunction(points, range, cfun) {
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const width = range[1] - range[0];
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const rescaled = points.map(([x, r, g, b]) => [
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x * width + range[0],
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r,
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g,
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b,
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]);
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cfun.removeAllPoints();
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rescaled.forEach(([x, r, g, b]) => cfun.addRGBPoint(x, r, g, b));
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return rescaled;
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}
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function applyPointsToPiecewiseFunction(points, range, pwf) {
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const width = range[1] - range[0];
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const rescaled = points.map(([x, y]) => [x * width + range[0], y]);
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pwf.removeAllPoints();
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rescaled.forEach(([x, y]) => pwf.addPoint(x, y));
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return rescaled;
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}
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@@ -1,29 +0,0 @@
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// https://www.slicer.org/w/index.php/Slicer3:2010_GenericAnatomyColors#Lookup_table
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const colors = [
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{
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integerLabel: 0,
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textLabel: 'background',
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color: [0, 0, 0, 0],
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},
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{
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integerLabel: 1,
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textLabel: 'tissue',
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// color: [255, 174, 128, 255],
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color: [255, 0, 0, 255],
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},
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{
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integerLabel: 2,
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textLabel: 'bone',
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// color: [241, 214, 145, 255],
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color: [0, 255, 0, 255],
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},
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{
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integerLabel: 3,
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textLabel: 'skin',
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// color: [177, 122, 101, 255],
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color: [0, 0, 255, 255],
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},
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// ....
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];
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export default colors;
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@@ -1,435 +0,0 @@
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const presets = [
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{
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name: 'CT-AAA',
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gradientOpacity: '4 0 1 255 1',
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specularPower: '10',
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scalarOpacity:
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'12 -3024 0 143.556 0 166.222 0.686275 214.389 0.696078 419.736 0.833333 3071 0.803922',
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id: 'vtkMRMLVolumePropertyNode1',
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specular: '0.2',
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shade: '1',
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ambient: '0.1',
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colorTransfer:
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'24 -3024 0 0 0 143.556 0.615686 0.356863 0.184314 166.222 0.882353 0.603922 0.290196 214.389 1 1 1 419.736 1 0.937033 0.954531 3071 0.827451 0.658824 1',
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selectable: 'true',
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diffuse: '0.9',
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interpolation: '1',
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effectiveRange: '143.556 419.736',
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},
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{
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name: 'CT-AAA2',
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gradientOpacity: '4 0 1 255 1',
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specularPower: '10',
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scalarOpacity:
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'16 -3024 0 129.542 0 145.244 0.166667 157.02 0.5 169.918 0.627451 395.575 0.8125 1578.73 0.8125 3071 0.8125',
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id: 'vtkMRMLVolumePropertyNode2',
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specular: '0.2',
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shade: '1',
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ambient: '0.1',
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colorTransfer:
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'32 -3024 0 0 0 129.542 0.54902 0.25098 0.14902 145.244 0.6 0.627451 0.843137 157.02 0.890196 0.47451 0.6 169.918 0.992157 0.870588 0.392157 395.575 1 0.886275 0.658824 1578.73 1 0.829256 0.957922 3071 0.827451 0.658824 1',
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selectable: 'true',
|
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diffuse: '0.9',
|
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interpolation: '1',
|
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effectiveRange: '0 1600',
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},
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{
|
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name: 'CT-Bone',
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gradientOpacity: '4 0 1 255 1',
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specularPower: '10',
|
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scalarOpacity: '8 -3024 0 -16.4458 0 641.385 0.715686 3071 0.705882',
|
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id: 'vtkMRMLVolumePropertyNode3',
|
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specular: '0.2',
|
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shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'16 -3024 0 0 0 -16.4458 0.729412 0.254902 0.301961 641.385 0.905882 0.815686 0.552941 3071 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-16.4458 641.385',
|
||||
},
|
||||
{
|
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name: 'CT-Bones',
|
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gradientOpacity: '4 0 1 985.12 1',
|
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specularPower: '1',
|
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scalarOpacity: '8 -1000 0 152.19 0 278.93 0.190476 952 0.2',
|
||||
id: 'vtkMRMLVolumePropertyNode4',
|
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specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'20 -1000 0.3 0.3 1 -488 0.3 1 0.3 463.28 1 0 0 659.15 1 0.912535 0.0374849 953 1 0.3 0.3',
|
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selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '152.19 952',
|
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},
|
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{
|
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name: 'CT-Cardiac',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'12 -3024 0 -77.6875 0 94.9518 0.285714 179.052 0.553571 260.439 0.848214 3071 0.875',
|
||||
id: 'vtkMRMLVolumePropertyNode5',
|
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specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'24 -3024 0 0 0 -77.6875 0.54902 0.25098 0.14902 94.9518 0.882353 0.603922 0.290196 179.052 1 0.937033 0.954531 260.439 0.615686 0 0 3071 0.827451 0.658824 1',
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||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-77.6875 260.439',
|
||||
},
|
||||
{
|
||||
name: 'CT-Cardiac2',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'12 -3024 0 42.8964 0 163.488 0.428571 277.642 0.776786 1587 0.754902 3071 0.754902',
|
||||
id: 'vtkMRMLVolumePropertyNode6',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'24 -3024 0 0 0 42.8964 0.54902 0.25098 0.14902 163.488 0.917647 0.639216 0.0588235 277.642 1 0.878431 0.623529 1587 1 1 1 3071 0.827451 0.658824 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '42.8964 1587',
|
||||
},
|
||||
{
|
||||
name: 'CT-Cardiac3',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'14 -3024 0 -86.9767 0 45.3791 0.169643 139.919 0.589286 347.907 0.607143 1224.16 0.607143 3071 0.616071',
|
||||
id: 'vtkMRMLVolumePropertyNode7',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'28 -3024 0 0 0 -86.9767 0 0.25098 1 45.3791 1 0 0 139.919 1 0.894893 0.894893 347.907 1 1 0.25098 1224.16 1 1 1 3071 0.827451 0.658824 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-86.9767 1224.16',
|
||||
},
|
||||
{
|
||||
name: 'CT-Chest-Contrast-Enhanced',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'10 -3024 0 67.0106 0 251.105 0.446429 439.291 0.625 3071 0.616071',
|
||||
id: 'vtkMRMLVolumePropertyNode8',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'20 -3024 0 0 0 67.0106 0.54902 0.25098 0.14902 251.105 0.882353 0.603922 0.290196 439.291 1 0.937033 0.954531 3071 0.827451 0.658824 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '67.0106 439.291',
|
||||
},
|
||||
{
|
||||
name: 'CT-Chest-Vessels',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'10 -3024 0 -1278.35 0 22.8277 0.428571 439.291 0.625 3071 0.616071',
|
||||
id: 'vtkMRMLVolumePropertyNode9',
|
||||
specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'20 -3024 0 0 0 -1278.35 0.54902 0.25098 0.14902 22.8277 0.882353 0.603922 0.290196 439.291 1 0.937033 0.954531 3071 0.827451 0.658824 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-1278.35 439.291',
|
||||
},
|
||||
{
|
||||
name: 'CT-Coronary-Arteries',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'12 -2048 0 136.47 0 159.215 0.258929 318.43 0.571429 478.693 0.776786 3661 1',
|
||||
id: 'vtkMRMLVolumePropertyNode10',
|
||||
specular: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'24 -2048 0 0 0 136.47 0 0 0 159.215 0.159804 0.159804 0.159804 318.43 0.764706 0.764706 0.764706 478.693 1 1 1 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '136.47 478.693',
|
||||
},
|
||||
{
|
||||
name: 'CT-Coronary-Arteries-2',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'14 -2048 0 142.677 0 145.016 0.116071 192.174 0.5625 217.24 0.776786 384.347 0.830357 3661 0.830357',
|
||||
id: 'vtkMRMLVolumePropertyNode11',
|
||||
specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'28 -2048 0 0 0 142.677 0 0 0 145.016 0.615686 0 0.0156863 192.174 0.909804 0.454902 0 217.24 0.972549 0.807843 0.611765 384.347 0.909804 0.909804 1 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '142.677 384.347',
|
||||
},
|
||||
{
|
||||
name: 'CT-Coronary-Arteries-3',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'14 -2048 0 128.643 0 129.982 0.0982143 173.636 0.669643 255.884 0.857143 584.878 0.866071 3661 1',
|
||||
id: 'vtkMRMLVolumePropertyNode12',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'28 -2048 0 0 0 128.643 0 0 0 129.982 0.615686 0 0.0156863 173.636 0.909804 0.454902 0 255.884 0.886275 0.886275 0.886275 584.878 0.968627 0.968627 0.968627 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '128.643 584.878',
|
||||
},
|
||||
{
|
||||
name: 'CT-Cropped-Volume-Bone',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '10 -2048 0 -451 0 -450 1 1050 1 3661 1',
|
||||
id: 'vtkMRMLVolumePropertyNode13',
|
||||
specular: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'20 -2048 0 0 0 -451 0 0 0 -450 0.0556356 0.0556356 0.0556356 1050 1 1 1 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-451 1050',
|
||||
},
|
||||
{
|
||||
name: 'CT-Fat',
|
||||
gradientOpacity: '6 0 1 985.12 1 988 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '14 -1000 0 -100 0 -99 0.15 -60 0.15 -59 0 101.2 0 952 0',
|
||||
id: 'vtkMRMLVolumePropertyNode14',
|
||||
specular: '0',
|
||||
references: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'36 -1000 0.3 0.3 1 -497.5 0.3 1 0.3 -99 0 0 1 -76.946 0 1 0 -65.481 0.835431 0.888889 0.0165387 83.89 1 0 0 463.28 1 0 0 659.15 1 0.912535 0.0374849 2952 1 0.300267 0.299886',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-100 101.2',
|
||||
},
|
||||
{
|
||||
name: 'CT-Liver-Vasculature',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'14 -2048 0 149.113 0 157.884 0.482143 339.96 0.660714 388.526 0.830357 1197.95 0.839286 3661 0.848214',
|
||||
id: 'vtkMRMLVolumePropertyNode15',
|
||||
specular: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'28 -2048 0 0 0 149.113 0 0 0 157.884 0.501961 0.25098 0 339.96 0.695386 0.59603 0.36886 388.526 0.854902 0.85098 0.827451 1197.95 1 1 1 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '149.113 1197.95',
|
||||
},
|
||||
{
|
||||
name: 'CT-Lung',
|
||||
gradientOpacity: '6 0 1 985.12 1 988 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '12 -1000 0 -600 0 -599 0.15 -400 0.15 -399 0 2952 0',
|
||||
id: 'vtkMRMLVolumePropertyNode16',
|
||||
specular: '0',
|
||||
references: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'24 -1000 0.3 0.3 1 -600 0 0 1 -530 0.134704 0.781726 0.0724558 -460 0.929244 1 0.109473 -400 0.888889 0.254949 0.0240258 2952 1 0.3 0.3',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-600 -399',
|
||||
},
|
||||
{
|
||||
name: 'CT-MIP',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity: '8 -3024 0 -637.62 0 700 1 3071 1',
|
||||
id: 'vtkMRMLVolumePropertyNode17',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer: '16 -3024 0 0 0 -637.62 1 1 1 700 1 1 1 3071 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-637.62 700',
|
||||
},
|
||||
{
|
||||
name: 'CT-Muscle',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity:
|
||||
'10 -3024 0 -155.407 0 217.641 0.676471 419.736 0.833333 3071 0.803922',
|
||||
id: 'vtkMRMLVolumePropertyNode18',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'20 -3024 0 0 0 -155.407 0.54902 0.25098 0.14902 217.641 0.882353 0.603922 0.290196 419.736 1 0.937033 0.954531 3071 0.827451 0.658824 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-155.407 419.736',
|
||||
},
|
||||
{
|
||||
name: 'CT-Pulmonary-Arteries',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'14 -2048 0 -568.625 0 -364.081 0.0714286 -244.813 0.401786 18.2775 0.607143 447.798 0.830357 3592.73 0.839286',
|
||||
id: 'vtkMRMLVolumePropertyNode19',
|
||||
specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'28 -2048 0 0 0 -568.625 0 0 0 -364.081 0.396078 0.301961 0.180392 -244.813 0.611765 0.352941 0.0705882 18.2775 0.843137 0.0156863 0.156863 447.798 0.752941 0.752941 0.752941 3592.73 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-568.625 447.798',
|
||||
},
|
||||
{
|
||||
name: 'CT-Soft-Tissue',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '10 -2048 0 -167.01 0 -160 1 240 1 3661 1',
|
||||
id: 'vtkMRMLVolumePropertyNode20',
|
||||
specular: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'20 -2048 0 0 0 -167.01 0 0 0 -160 0.0556356 0.0556356 0.0556356 240 1 1 1 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-167.01 240',
|
||||
},
|
||||
{
|
||||
name: 'CT-Air',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '10',
|
||||
scalarOpacity: '8 -3024 0.705882 -900.0 0.715686 -500.0 0 3071 0',
|
||||
id: 'vtkMRMLVolumePropertyNode21',
|
||||
specular: '0.2',
|
||||
shade: '1',
|
||||
ambient: '0.1',
|
||||
colorTransfer:
|
||||
'16 -3024 1 1 1 -900.0 0.2 1.0 1.0 -500.0 0.3 0.3 1.0 3071 0 0 0 ',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '-1200.0 -200.0',
|
||||
},
|
||||
{
|
||||
name: 'MR-Angio',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity:
|
||||
'12 -2048 0 151.354 0 158.279 0.4375 190.112 0.580357 200.873 0.732143 3661 0.741071',
|
||||
id: 'vtkMRMLVolumePropertyNode22',
|
||||
specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'24 -2048 0 0 0 151.354 0 0 0 158.279 0.74902 0.376471 0 190.112 1 0.866667 0.733333 200.873 0.937255 0.937255 0.937255 3661 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '151.354 200.873',
|
||||
},
|
||||
{
|
||||
name: 'MR-Default',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '12 0 0 20 0 40 0.15 120 0.3 220 0.375 1024 0.5',
|
||||
id: 'vtkMRMLVolumePropertyNode23',
|
||||
specular: '0',
|
||||
shade: '1',
|
||||
ambient: '0.2',
|
||||
colorTransfer:
|
||||
'24 0 0 0 0 20 0.168627 0 0 40 0.403922 0.145098 0.0784314 120 0.780392 0.607843 0.380392 220 0.847059 0.835294 0.788235 1024 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '0 220',
|
||||
},
|
||||
{
|
||||
name: 'MR-MIP',
|
||||
gradientOpacity: '4 0 1 255 1',
|
||||
specularPower: '1',
|
||||
scalarOpacity: '8 0 0 98.3725 0 416.637 1 2800 1',
|
||||
id: 'vtkMRMLVolumePropertyNode24',
|
||||
specular: '0',
|
||||
shade: '0',
|
||||
ambient: '0.2',
|
||||
colorTransfer: '16 0 1 1 1 98.3725 1 1 1 416.637 1 1 1 2800 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '1',
|
||||
interpolation: '1',
|
||||
effectiveRange: '0 416.637',
|
||||
},
|
||||
{
|
||||
name: 'MR-T2-Brain',
|
||||
gradientOpacity: '4 0 1 160.25 1',
|
||||
specularPower: '40',
|
||||
scalarOpacity: '10 0 0 36.05 0 218.302 0.171429 412.406 1 641 1',
|
||||
id: 'vtkMRMLVolumePropertyNode25',
|
||||
specular: '0.5',
|
||||
shade: '1',
|
||||
ambient: '0.3',
|
||||
colorTransfer:
|
||||
'16 0 0 0 0 98.7223 0.956863 0.839216 0.192157 412.406 0 0.592157 0.807843 641 1 1 1',
|
||||
selectable: 'true',
|
||||
diffuse: '0.6',
|
||||
interpolation: '1',
|
||||
effectiveRange: '0 412.406',
|
||||
},
|
||||
{
|
||||
name: 'DTI-FA-Brain',
|
||||
gradientOpacity: '4 0 1 0.9950 1',
|
||||
specularPower: '40',
|
||||
scalarOpacity:
|
||||
'16 0 0 0 0 0.3501 0.0158 0.49379 0.7619 0.6419 1 0.9920 1 0.9950 0 0.9950 0',
|
||||
id: 'vtkMRMLVolumePropertyNode26',
|
||||
specular: '0.5',
|
||||
shade: '1',
|
||||
ambient: '0.3',
|
||||
colorTransfer:
|
||||
'28 0 1 0 0 0 1 0 0 0.24974 0.4941 1 0 0.49949 0 0.9882 1 0.7492 0.51764 0 1 0.9950 1 0 0 0.9950 1 0 0',
|
||||
selectable: 'true',
|
||||
diffuse: '0.9',
|
||||
interpolation: '1',
|
||||
effectiveRange: '0 1',
|
||||
},
|
||||
];
|
||||
|
||||
export default presets;
|
||||
@@ -1,93 +0,0 @@
|
||||
import { cache, utilities } from '@cornerstonejs/core';
|
||||
import vtkColorMaps from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction/ColorMaps';
|
||||
import vtkColorTransferFunction from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction';
|
||||
import vtkPiecewiseFunction from '@kitware/vtk.js/Common/DataModel/PiecewiseFunction';
|
||||
|
||||
const colormaps = {};
|
||||
|
||||
export function registerColormap(colormap) {
|
||||
colormaps[colormap.Name] = colormap;
|
||||
}
|
||||
|
||||
function setColorTransferFunctionFromVolumeMetadata({
|
||||
volumeActor,
|
||||
volumeId,
|
||||
inverted,
|
||||
}) {
|
||||
let lower, upper, windowWidth, windowCenter;
|
||||
|
||||
if (volumeId) {
|
||||
const volume = cache.getVolume(volumeId);
|
||||
const voiLutModule = volume.metadata.voiLut[0];
|
||||
if (voiLutModule) {
|
||||
windowWidth = voiLutModule.windowWidth;
|
||||
windowCenter = voiLutModule.windowCenter;
|
||||
}
|
||||
} else {
|
||||
windowWidth = 400;
|
||||
windowCenter = 40;
|
||||
}
|
||||
|
||||
if (windowWidth == undefined || windowCenter === undefined) {
|
||||
// Set to something so we can window level it manually.
|
||||
lower = 200;
|
||||
upper = 400;
|
||||
} else {
|
||||
lower = windowCenter - windowWidth / 2.0;
|
||||
upper = windowCenter + windowWidth / 2.0;
|
||||
}
|
||||
|
||||
setLowerUpperColorTransferFunction({ volumeActor, lower, upper, inverted });
|
||||
}
|
||||
|
||||
function setLowerUpperColorTransferFunction({
|
||||
volumeActor,
|
||||
lower,
|
||||
upper,
|
||||
inverted,
|
||||
}) {
|
||||
volumeActor
|
||||
.getProperty()
|
||||
.getRGBTransferFunction(0)
|
||||
.setMappingRange(lower, upper);
|
||||
|
||||
if (inverted) {
|
||||
utilities.invertRgbTransferFunction(
|
||||
volumeActor.getProperty().getRGBTransferFunction(0)
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
function setColormap(volumeActor, colormap) {
|
||||
const mapper = volumeActor.getMapper();
|
||||
mapper.setSampleDistance(1.0);
|
||||
|
||||
const cfun = vtkColorTransferFunction.newInstance();
|
||||
|
||||
// if we have a custom colormap, use it
|
||||
let preset;
|
||||
if (colormaps[colormap]) {
|
||||
preset = colormaps[colormap];
|
||||
} else {
|
||||
preset = vtkColorMaps.getPresetByName(colormap);
|
||||
}
|
||||
|
||||
cfun.applyColorMap(preset);
|
||||
cfun.setMappingRange(0, 5);
|
||||
|
||||
volumeActor.getProperty().setRGBTransferFunction(0, cfun);
|
||||
|
||||
// Create scalar opacity function
|
||||
const ofun = vtkPiecewiseFunction.newInstance();
|
||||
ofun.addPoint(0, 0.0);
|
||||
ofun.addPoint(0.1, 0.9);
|
||||
ofun.addPoint(5, 1.0);
|
||||
|
||||
volumeActor.getProperty().setScalarOpacity(0, ofun);
|
||||
}
|
||||
|
||||
export {
|
||||
setColormap,
|
||||
setColorTransferFunctionFromVolumeMetadata,
|
||||
setLowerUpperColorTransferFunction,
|
||||
};
|
||||
Reference in new issue
Block a user