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fix: Cornerstone3D 3.0 (#4816)

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Co-authored-by: sedghi <ar.sedghi@gmail.com>
This commit is contained in:
Bill Wallaceandsedghi authored and GitHub committed 2025-02-28 14:16:39 -05:00
1 parent 62abb3ac47
commit 24567c4e92
25 files changed
+326 -342
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extensions/cornerstone-dicom-sr/src/utils/hydrateStructuredReport.ts
+2 -60
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@@ -85,7 +85,8 @@ export default function hydrateStructuredReport(
}
});
const datasetToUse = _mapLegacyDataSet(instance);
// Mapping of legacy datasets is now directly handled by adapters module
const datasetToUse = instance;
// Use dcmjs to generate toolState.
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
@@ -237,62 +238,3 @@ export default function hydrateStructuredReport(
SeriesInstanceUIDs,
};
}
function _mapLegacyDataSet(dataset) {
const REPORT = 'Imaging Measurements';
const GROUP = 'Measurement Group';
const TRACKING_IDENTIFIER = 'Tracking Identifier';
// Identify the Imaging Measurements
const imagingMeasurementContent = toArray(dataset.ContentSequence).find(
codeMeaningEquals(REPORT)
);
// Retrieve the Measurements themselves
const measurementGroups = toArray(imagingMeasurementContent.ContentSequence).filter(
codeMeaningEquals(GROUP)
);
// For each of the supported measurement types, compute the measurement data
const measurementData = {};
const cornerstoneToolClasses = MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
const registeredToolClasses = [];
Object.keys(cornerstoneToolClasses).forEach(key => {
registeredToolClasses.push(cornerstoneToolClasses[key]);
measurementData[key] = [];
});
measurementGroups.forEach((measurementGroup, index) => {
const measurementGroupContentSequence = toArray(measurementGroup.ContentSequence);
const TrackingIdentifierGroup = measurementGroupContentSequence.find(
contentItem => contentItem.ConceptNameCodeSequence.CodeMeaning === TRACKING_IDENTIFIER
);
const TrackingIdentifier = TrackingIdentifierGroup.TextValue;
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
cornerstoneTag = CORNERSTONE_3D_TAG;
}
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
TrackingIdentifierGroup.TextValue = mappedTrackingIdentifier;
});
return dataset;
}
const toArray = function (x) {
return Array.isArray(x) ? x : [x];
};
const codeMeaningEquals = codeMeaningName => {
return contentItem => {
return contentItem.ConceptNameCodeSequence.CodeMeaning === codeMeaningName;
};
};
extensions/cornerstone-dicom-sr/src/utils/isRehydratable.js
-60
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@@ -1,60 +0,0 @@
import { adaptersSR } from '@cornerstonejs/adapters';
const cornerstoneAdapters =
adaptersSR.Cornerstone3D.MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
const CORNERSTONE_3D_TAG = adaptersSR.Cornerstone3D.CORNERSTONE_3D_TAG;
/**
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
*
* @param {object} displaySet The SR `displaySet` to check.
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
*/
export default function isRehydratable(displaySet, mappings) {
if (!mappings || !mappings.length) {
return false;
}
const mappingDefinitions = mappings.map(m => m.annotationType);
const { measurements } = displaySet;
const adapterKeys = Object.keys(cornerstoneAdapters).filter(
adapterKey =>
typeof cornerstoneAdapters[adapterKey].isValidCornerstoneTrackingIdentifier === 'function'
);
const adapters = [];
adapterKeys.forEach(key => {
if (mappingDefinitions.includes(key)) {
// Must have both a dcmjs adapter and a measurementService
// Definition in order to be a candidate for import.
adapters.push(cornerstoneAdapters[key]);
}
});
for (let i = 0; i < measurements.length; i++) {
const { TrackingIdentifier } = measurements[i] || {};
const hydratable = adapters.some(adapter => {
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
cornerstoneTag = CORNERSTONE_3D_TAG;
}
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
return adapter.isValidCornerstoneTrackingIdentifier(mappedTrackingIdentifier);
});
if (hydratable) {
return true;
}
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
}
console.log('No measurements found which were rehydratable');
return false;
}
extensions/cornerstone-dicom-sr/src/utils/isRehydratable.ts
+41
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@@ -0,0 +1,41 @@
import { adaptersSR } from '@cornerstonejs/adapters';
const { MeasurementReport } = adaptersSR.Cornerstone3D;
/**
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
*
* @param {object} displaySet The SR `displaySet` to check.
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
*/
export default function isRehydratable(displaySet, mappings) {
if (!mappings || !mappings.length) {
return false;
}
const mappingDefinitions = new Set<string>();
for (const m of mappings) {
mappingDefinitions.add(m.annotationType);
}
const { measurements } = displaySet;
for (let i = 0; i < measurements.length; i++) {
const { TrackingIdentifier } = measurements[i] || {};
if (!TrackingIdentifier) {
console.warn('No tracking identifier for measurement ', measurements[i]);
continue;
}
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(TrackingIdentifier);
const hydratable = adapter && mappingDefinitions.has(adapter.toolType);
if (hydratable) {
return true;
}
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
}
console.log('No measurements found which were rehydratable');
return false;
}