diff --git a/docs/.gitignore b/docs/.gitignore new file mode 100644 index 000000000..8bec8ec32 --- /dev/null +++ b/docs/.gitignore @@ -0,0 +1 @@ +_book/ \ No newline at end of file diff --git a/docs/latest/SUMMARY.md b/docs/latest/SUMMARY.md index 9730becc8..58aabd9e2 100644 --- a/docs/latest/SUMMARY.md +++ b/docs/latest/SUMMARY.md @@ -1,14 +1,9 @@ # OHIF Viewers -- Documentation Version -- - - Essentials - [Getting Started](essentials/getting-started.md) - [Troubleshooting](essentials/troubleshooting.md) +- [Architecture](architecture/index.md) - Connecting to Image Archives - [DICOM Web](connecting-to-image-archives/dicomweb.md) diff --git a/docs/latest/_book/I-want-to/script-tag.html b/docs/latest/_book/I-want-to/script-tag.html deleted file mode 100644 index 70cea5bb8..000000000 --- a/docs/latest/_book/I-want-to/script-tag.html +++ /dev/null @@ -1,442 +0,0 @@ - - - - - - - Embed the viewer using a script tag · OHIF - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Important notes:

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    Connecting to Image Archives

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    DICOM Web

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    DICOMWeb refers to RESTful DICOM Services and is a recently standardized set of guidelines for exchanging medical images and imaging metadata over the internet. Not all archives fully support it yet, but it is gaining wider adoption.

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      I would like to contribute code - how do I do this?

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      Fork the repository, make your change and submit a pull request.

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      Any guidance on submitting changes?

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      While we do appreciate code contributions, triaging and integrating contributed code changes can be very time consuming. Please consider the following tips when working on your pull requests:

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      • Code quality is acceptable. We don't have coding standards defined, but make sure it passes ESLint and looks like the rest of the code in the repository.
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      • Quality of design is acceptable. This is a bit subjective so you should consider posting on the forum for specific guidance.
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      Testing contribution pull requests

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      OHIF uses netlify so that pull requests are autogenerated and available for testing.

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      For example, this url allows you to test pull request 237, the request that created this FAQ entry, using data pulled from Amazon S3.

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      Replacing the number 237 in the link below with your pull request number should let you test it as well and you can use this link for discussions on github without requiring reviewers to download and build your branch.

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      https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
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      If you have made a documentation change, a link like this will let you preview the gitbook generated by the pull request:

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This is useful for development, debugging, or evolving ohif-viewer into your own custom imaging application. - -# Rollup - -> [Rollup](https://rollupjs.org/guide/en) is a module bundler for JavaScript. It uses the new standardized format for code modules included in the ES6 revision of JavaScript. - -The ohif-viewer package can be built with Rollup to provide a set of React components which can be dropped into a larger application. Specifically, the ohif-viewer package provides a React component named `OHIFViewer` which is the entire viewer, configurable via React `props`. This is useful for including the OHIF Viewer in a larger web application, as the entire application can be provided via a ` - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/docs/latest/_book/essentials/meteor-packages.md b/docs/latest/_book/essentials/meteor-packages.md deleted file mode 100644 index e172aba86..000000000 --- a/docs/latest/_book/essentials/meteor-packages.md +++ /dev/null @@ -1,60 +0,0 @@ -# Meteor Packages - -### Commands (*ohif-commands*) -### Core (*ohif-core*) - -## Cornerstone Package (*ohif-cornerstone*) - -This package contains a number of front-end libraries that help us build web-based medical imaging applications. - -These are: -- [dicomParser](https://github.com/cornerstonejs/dicomParser): -A lightweight JavaScript library for parsing DICOM P10 byte streams in modern web browsers (IE10+), Node.js, and Meteor. - -- [Cornerstone Core](https://github.com/cornerstonejs/cornerstone): -A lightweight JavaScript library for displaying medical images in modern web browsers that support the HTML5 canvas element. - -- [Cornerstone Tools](https://github.com/cornerstonejs/cornerstoneTools): -A library built on top of cornerstone that provides a set of common tools needed in medical imaging to work with images and stacks of images - -- [Cornerstone Math](https://github.com/cornerstonejs/cornerstoneMath): -Math and computational geometry functionality for Cornerstone - -- [Cornerstone WADO Image Loader](https://github.com/cornerstonejs/cornerstoneWADOImageLoader): -A Cornerstone Image Loader for DICOM P10 instances over HTTP. This can be used to integrate cornerstone with WADO-URI servers or any other HTTP based server that returns DICOM P10 instances (e.g. Orthanc or custom servers). - -- [Hammer.js](https://github.com/hammerjs/hammer.js): -A JavaScript library for multi-touch gestures - -### Design (*ohif-design*) -### DICOM Services (*ohif-dicom-services*) -It contains a number of helper functions for retrieving common value types (e.g. JSON, patient name, image frame) from a DICOM image. This package is for server-side usage. - -### Hanging Protocols (*ohif-hanging-protocols*) -### Header (*ohif-header*) -### Hotkeys (*ohif-hotkeys*) - -### Lesion Tracker (*ohif-lesiontracker*) -This package stores all of the oncology-specific tools and functions developed for the Lesion Tracker application. Here we store, for example, the Target measurement and Non-target pointer tools that are used to monitor tumour burden over time. - -This package also stores Meteor components for the interactive lesion table used in the Lesion Tracker, and dialog boxes for the callbacks attached to the Target and Non-target tools. - -### Logging (*ohif-log*) -### Logging (*ohif-measurements*) -### Metadata (*ohif-metadata*) -### Polyfilling Functionality (*ohif-polyfill*) - -### Select Tree UI (*ohif-select-tree*) -### Server Settings UI (*ohif-servers*) -### Studies (*ohif-studies*) -### Study List UI (*ohif-study-list*) -### Common Themes (*ohif-themes-common*) -### Theming (*ohif-themes*) -### User Management (*ohif-user-management*) -### User (*ohif-user*) - -### Basic Viewer Components (*ohif-viewerbase*) -This is the largest package in the repository. It holds a large number of re-usable Meteor components that are used to build both the OHIF Viewer and Lesion Tracker. - -### WADO Proxy (*ohif-wadoproxy*) -Proxy for CORS diff --git a/docs/latest/_book/essentials/troubleshooting.html b/docs/latest/_book/essentials/troubleshooting.html deleted file mode 100644 index 0e4512971..000000000 --- a/docs/latest/_book/essentials/troubleshooting.html +++ /dev/null @@ -1,464 +0,0 @@ - - - - - - - Troubleshooting · OHIF - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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        Troubleshooting

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        ProblemMost Common Reasons
        Can't retrieve Study List over DICOMWeb1. QIDO root URL is incorrect
        2. DICOM Web is not enabled on PACS
        Can't retrieve images1. WADO Root URL is incorrect
        2. DICOM Web is not enabled on PACS
        3. HTTP Basic Authentication username and password are incorrect or not provided.
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        Debugging Steps

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        Can't retrieve Study List over DICOMWeb

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        1. Check that you can query your PACS using an alternative DICOM Web client (e.g. cURL, or a Web Browser). If you cannot, then your PACS is configured incorrectly. Refer to the documentation of the image archive.
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          Frequently Asked Questions - General

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          How do I file a bug?

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          We accept and triage bug reports through Github primarily.

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          2. Search the current Issue List to ensure you are not creating a duplicate issue.

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            If your issue already exists, post a comment to show us that this issue also affects you.

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          3. If no prior issue exists, Create a New Issue on the repository.

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          Some tips for filing a new issue:

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          • Make sure your issue is reproducible: If we try to reproduce your issue given your provided steps and we cannot reproduce it, we will not be able to fix it. Nobody wants to spend time guessing how to reproduce your issue! Before filing, please reproduce your issue more than once and clearly describe the steps taken.
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          • If you are reporting a user interface issue, provide screenshots: A picture is worth a thousand words. If your issue concerns the UI, screenshots will help us identify the issue dramatically faster since it can be extremely challenging to describe UI bugs with text. You should still clearly describe the steps that you took to produce the issue.
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          How can I request a new feature?

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          At the moment we are in the process of defining our roadmap and will do our best to communicate this to the community. If your requested feature is on the roadmap, then it will most likely be built at some point. If it is not, you are welcome to build it yourself and contribute it. If you have resources and would like to fund the development of a feature, please contact us.

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          Who should I contact about Academic Collaborations?

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          Gordon J. Harris at Massachusetts General Hospital is the primary contact for any academic collaborators. We are always happy to hear about new groups interested in using the OHIF framework, and may be able to provide development support if the proposed collaboration has an impact on cancer research.

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          Do you offer commercial support?

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          The Open Health Imaging Foundation does not offer commercial support, however, some community members do offer consulting services. The following contacts may be useful:

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          Please file a Pull Request if you wish to add your name or organization to this list.

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          I emailed my question to you directly and you did not respond. Why not?

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          Emailing developers directly is not a shortcut to faster support. Please file your issues and questions on Github so that everyone can benefit from the discussion and solutions.

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          Do your Viewers have 510(k) Clearance from the U.S. F.D.A or CE Marking from the European Commission?

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          NO. The OHIF Viewer, Lesion Tracker, and Standalone Viewer, NOT F.D.A. cleared or CE Marked. It is the users responsibility to ensure compliance with applicable rules and regulations. The License for the OHIF Framework does not prevent your company or group from seeking F.D.A. clearance for a product built using the framework.

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          If you have gone this route (or are going there), please let us know because we would be interested to hear about your experience.

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          Are your Viewers HIPAA Compliant?

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          NO. The OHIF Viewer, Lesion Tracker, and Standalone Viewer DO NOT fulfill all of the criteria to become HIPAA Compliant. It is the users responsibility to ensure compliance with applicable rules and regulations.

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            - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/docs/latest/_book/faq/technical.md b/docs/latest/_book/faq/technical.md deleted file mode 100644 index 83d08f24d..000000000 --- a/docs/latest/_book/faq/technical.md +++ /dev/null @@ -1 +0,0 @@ -# Frequently Asked Questions - Technical diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/FontAwesome.otf b/docs/latest/_book/gitbook/fonts/fontawesome/FontAwesome.otf deleted file mode 100644 index d4de13e83..000000000 Binary files a/docs/latest/_book/gitbook/fonts/fontawesome/FontAwesome.otf and /dev/null differ diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.eot b/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.eot deleted file mode 100644 index c7b00d2ba..000000000 Binary files a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.eot and /dev/null differ diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.svg b/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.svg deleted file mode 100644 index 8b66187fe..000000000 --- a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.svg +++ /dev/null @@ -1,685 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.ttf b/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.ttf deleted file mode 100644 index f221e50a2..000000000 Binary files a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.ttf and /dev/null differ diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff b/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff deleted file mode 100644 index 6e7483cf6..000000000 Binary files a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff and /dev/null differ diff --git a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff2 b/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff2 deleted file mode 100644 index 7eb74fd12..000000000 Binary files a/docs/latest/_book/gitbook/fonts/fontawesome/fontawesome-webfont.woff2 and /dev/null differ diff --git a/docs/latest/_book/gitbook/gitbook-plugin-anchors/plugin.css b/docs/latest/_book/gitbook/gitbook-plugin-anchors/plugin.css deleted file mode 100644 index adf3e9ec0..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-anchors/plugin.css +++ /dev/null @@ -1,30 +0,0 @@ - -a.plugin-anchor { - color: inherit !important; - display: none; - margin-left: -30px; - padding-left: 40px; - cursor: pointer; - position: absolute; - top: 0; - left: 0; - bottom: 0; -} - -a.plugin-anchor i { - margin-left: -30px; - font-size: 15px !important; -} - -h1, h2, h3, h4, h5, h6 { - position: relative; -} - -h1:hover a.plugin-anchor, h2:hover a.plugin-anchor, h3:hover a.plugin-anchor, -h4:hover a.plugin-anchor, h5:hover a.plugin-anchor, h6:hover a.plugin-anchor { - display: inline-block; -} - -.book .book-body .page-wrapper .page-inner section.normal { - overflow: visible; -} diff --git a/docs/latest/_book/gitbook/gitbook-plugin-edit-link/plugin.js b/docs/latest/_book/gitbook/gitbook-plugin-edit-link/plugin.js deleted file mode 100644 index 32f349485..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-edit-link/plugin.js +++ /dev/null @@ -1,30 +0,0 @@ -require(["gitbook", "jQuery"], function(gitbook, $) { - gitbook.events.bind('start', function (e, config) { - var conf = config['edit-link']; - var label = conf.label; - var base = conf.base; - var lang = gitbook.state.innerLanguage; - if (lang) { - // label can be a unique string for multi-languages site - if (typeof label === 'object') label = label[lang]; - - lang = lang + '/'; - } - - // Add slash at the end if not present - if (base.slice(-1) != "/") { - base = base + "/"; - } - - gitbook.toolbar.createButton({ - icon: 'fa fa-edit', - text: label, - onClick: function() { - var filepath = gitbook.state.filepath; - - window.open(base + lang + filepath); - } - }); - }); - -}); \ No newline at end of file diff --git a/docs/latest/_book/gitbook/gitbook-plugin-ga/plugin.js b/docs/latest/_book/gitbook/gitbook-plugin-ga/plugin.js deleted file mode 100644 index ff21e9c6b..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-ga/plugin.js +++ /dev/null @@ -1,17 +0,0 @@ -require(["gitbook"], function(gitbook) { - // Load analytics.js - gitbook.events.bind("start", function(e, config) { - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - var cfg = config.ga; - ga('create', cfg.token, cfg.configuration); - }); - - // Notify pageview - gitbook.events.bind("page.change", function() { - ga('send', 'pageview', window.location.pathname+window.location.search); - }); -}); diff --git a/docs/latest/_book/gitbook/gitbook-plugin-github/plugin.js b/docs/latest/_book/gitbook/gitbook-plugin-github/plugin.js deleted file mode 100644 index 14810ce0b..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-github/plugin.js +++ /dev/null @@ -1,14 +0,0 @@ -require([ 'gitbook' ], function (gitbook) { - gitbook.events.bind('start', function (e, config) { - var githubURL = config.github.url; - - gitbook.toolbar.createButton({ - icon: 'fa fa-github', - label: 'GitHub', - position: 'right', - onClick: function() { - window.open(githubURL) - } - }); - }); -}); diff --git a/docs/latest/_book/gitbook/gitbook-plugin-highlight/ebook.css b/docs/latest/_book/gitbook/gitbook-plugin-highlight/ebook.css deleted file mode 100644 index cecaaab5a..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-highlight/ebook.css +++ /dev/null @@ -1,135 +0,0 @@ -pre, -code { - /* http://jmblog.github.io/color-themes-for-highlightjs */ - /* Tomorrow Comment */ - /* Tomorrow Red */ - /* Tomorrow Orange */ - /* Tomorrow Yellow */ - /* Tomorrow Green */ - /* Tomorrow Aqua */ - /* Tomorrow Blue */ - /* Tomorrow Purple */ -} -pre .hljs-comment, -code .hljs-comment, -pre .hljs-title, -code .hljs-title { - color: #8e908c; 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-} -pre .hljs, -code .hljs { - display: block; - background: white; - color: #4d4d4c; - padding: 0.5em; -} -pre .coffeescript .javascript, -code .coffeescript .javascript, -pre .javascript .xml, -code .javascript .xml, -pre .tex .hljs-formula, -code .tex .hljs-formula, -pre .xml .javascript, -code .xml .javascript, -pre .xml .vbscript, -code .xml .vbscript, -pre .xml .css, -code .xml .css, -pre .xml .hljs-cdata, -code .xml .hljs-cdata { - opacity: 0.5; -} diff --git a/docs/latest/_book/gitbook/gitbook-plugin-highlight/website.css b/docs/latest/_book/gitbook/gitbook-plugin-highlight/website.css deleted file mode 100644 index 6674448f7..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-highlight/website.css +++ /dev/null @@ -1,434 +0,0 @@ -.book .book-body .page-wrapper .page-inner section.normal pre, -.book .book-body .page-wrapper .page-inner section.normal code { - /* http://jmblog.github.com/color-themes-for-google-code-highlightjs */ - /* Tomorrow Comment */ - /* Tomorrow Red */ - /* Tomorrow Orange */ - /* Tomorrow Yellow */ - /* Tomorrow Green */ - /* Tomorrow Aqua */ - /* Tomorrow Blue */ - /* Tomorrow Purple */ -} -.book .book-body .page-wrapper .page-inner section.normal pre .hljs-comment, -.book .book-body .page-wrapper .page-inner section.normal code .hljs-comment, -.book .book-body .page-wrapper .page-inner section.normal pre .hljs-title, -.book .book-body .page-wrapper .page-inner section.normal code .hljs-title { - color: #8e908c; 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T=s.exec(n);i=T[1],o=T[2],s=u,s.test(i)&&(n=i+e[o])}if(s=_,a=F,s.test(n)){var T=s.exec(n);i=T[1],s=c,s.test(i)&&(n=i)}else if(a.test(n)){var T=a.exec(n);i=T[1]+T[2],a=c,a.test(i)&&(n=i)}if(s=O,s.test(n)){var T=s.exec(n);i=T[1],s=c,a=f,h=N,(s.test(i)||a.test(i)&&!h.test(i))&&(n=i)}return s=P,a=c,s.test(n)&&a.test(n)&&(s=g,n=n.replace(s,"")),"y"==r&&(n=r.toLowerCase()+n.substr(1)),n};return T}(),t.Pipeline.registerFunction(t.stemmer,"stemmer"),t.stopWordFilter=function(e){return e&&t.stopWordFilter.stopWords[e]!==e?e:void 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e=t.replace(/^\W+/,"").replace(/\W+$/,"");return""===e?void 0:e},t.Pipeline.registerFunction(t.trimmer,"trimmer"),t.TokenStore=function(){this.root={docs:{}},this.length=0},t.TokenStore.load=function(t){var e=new this;return e.root=t.root,e.length=t.length,e},t.TokenStore.prototype.add=function(t,e,n){var n=n||this.root,i=t[0],o=t.slice(1);return i in n||(n[i]={docs:{}}),0===o.length?(n[i].docs[e.ref]=e,void(this.length+=1)):this.add(o,e,n[i])},t.TokenStore.prototype.has=function(t){if(!t)return!1;for(var e=this.root,n=0;n element for each result - res.results.forEach(function(res) { - var $li = $('
          • ', { - 'class': 'search-results-item' - }); - - var $title = $('

            '); - - var $link = $('', { - 'href': gitbook.state.basePath + '/' + res.url, - 'text': res.title - }); - - var content = res.body.trim(); - if (content.length > MAX_DESCRIPTION_SIZE) { - content = content.slice(0, MAX_DESCRIPTION_SIZE).trim()+'...'; - } - var $content = $('

            ').html(content); - - $link.appendTo($title); - $title.appendTo($li); - $content.appendTo($li); - $li.appendTo($searchList); - }); - } - - function launchSearch(q) { - // Add class for loading - $body.addClass('with-search'); - $body.addClass('search-loading'); - - // Launch search query - throttle(gitbook.search.query(q, 0, MAX_RESULTS) - .then(function(results) { - displayResults(results); - }) - .always(function() { - $body.removeClass('search-loading'); - }), 1000); - } - - function closeSearch() { - $body.removeClass('with-search'); - $bookSearchResults.removeClass('open'); - } - - function launchSearchFromQueryString() { - var q = getParameterByName('q'); - if (q && q.length > 0) { - // Update search input - $searchInput.val(q); - - // Launch search - launchSearch(q); - } - } - - function bindSearch() { - // Bind DOM - $searchInput = $('#book-search-input input'); - $bookSearchResults = $('#book-search-results'); - $searchList = $bookSearchResults.find('.search-results-list'); - $searchTitle = $bookSearchResults.find('.search-results-title'); - $searchResultsCount = $searchTitle.find('.search-results-count'); - $searchQuery = $searchTitle.find('.search-query'); - - // Launch query based on input content - function handleUpdate() { - var q = $searchInput.val(); - - if (q.length == 0) { - closeSearch(); - } - else { - launchSearch(q); - } - } - - // Detect true content change in search input - // Workaround for IE < 9 - var propertyChangeUnbound = false; - $searchInput.on('propertychange', function(e) { - if (e.originalEvent.propertyName == 'value') { - handleUpdate(); - } - }); - - // HTML5 (IE9 & others) - $searchInput.on('input', function(e) { - // Unbind propertychange event for IE9+ - if (!propertyChangeUnbound) { - $(this).unbind('propertychange'); - propertyChangeUnbound = true; - } - - handleUpdate(); - }); - - // Push to history on blur - $searchInput.on('blur', function(e) { - // Update history state - if (usePushState) { - var uri = updateQueryString('q', $(this).val()); - history.pushState({ path: uri }, null, uri); - } - }); - } - - gitbook.events.on('page.change', function() { - bindSearch(); - closeSearch(); - - // Launch search based on query parameter - if (gitbook.search.isInitialized()) { - launchSearchFromQueryString(); - } - }); - - gitbook.events.on('search.ready', function() { - bindSearch(); - - // Launch search from query param at start - launchSearchFromQueryString(); - }); - - function getParameterByName(name) { - var url = window.location.href; - name = name.replace(/[\[\]]/g, '\\$&'); - var regex = new RegExp('[?&]' + name + '(=([^&#]*)|&|#|$)', 'i'), - results = regex.exec(url); - if (!results) return null; - if (!results[2]) return ''; - return decodeURIComponent(results[2].replace(/\+/g, ' ')); - } - - function updateQueryString(key, value) { - value = encodeURIComponent(value); - - var url = window.location.href; - var re = new RegExp('([?&])' + key + '=.*?(&|#|$)(.*)', 'gi'), - hash; - - if (re.test(url)) { - if (typeof value !== 'undefined' && value !== null) - return url.replace(re, '$1' + key + '=' + value + '$2$3'); - else { - hash = url.split('#'); - url = hash[0].replace(re, '$1$3').replace(/(&|\?)$/, ''); - if (typeof hash[1] !== 'undefined' && hash[1] !== null) - url += '#' + hash[1]; - return url; - } - } - else { - if (typeof value !== 'undefined' && value !== null) { - var separator = url.indexOf('?') !== -1 ? '&' : '?'; - hash = url.split('#'); - url = hash[0] + separator + key + '=' + value; - if (typeof hash[1] !== 'undefined' && hash[1] !== null) - url += '#' + hash[1]; - return url; - } - else - return url; - } - } -}); diff --git a/docs/latest/_book/gitbook/gitbook-plugin-sharing/buttons.js b/docs/latest/_book/gitbook/gitbook-plugin-sharing/buttons.js deleted file mode 100644 index 709a4e4c0..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-sharing/buttons.js +++ /dev/null @@ -1,90 +0,0 @@ -require(['gitbook', 'jquery'], function(gitbook, $) { - var SITES = { - 'facebook': { - 'label': 'Facebook', - 'icon': 'fa fa-facebook', - 'onClick': function(e) { - e.preventDefault(); - window.open('http://www.facebook.com/sharer/sharer.php?s=100&p[url]='+encodeURIComponent(location.href)); - } - }, - 'twitter': { - 'label': 'Twitter', - 'icon': 'fa fa-twitter', - 'onClick': function(e) { - e.preventDefault(); - window.open('http://twitter.com/home?status='+encodeURIComponent(document.title+' '+location.href)); - } - }, - 'google': { - 'label': 'Google+', - 'icon': 'fa fa-google-plus', - 'onClick': function(e) { - e.preventDefault(); - window.open('https://plus.google.com/share?url='+encodeURIComponent(location.href)); - } - }, - 'weibo': { - 'label': 'Weibo', - 'icon': 'fa fa-weibo', - 'onClick': function(e) { - e.preventDefault(); - window.open('http://service.weibo.com/share/share.php?content=utf-8&url='+encodeURIComponent(location.href)+'&title='+encodeURIComponent(document.title)); - } - }, - 'instapaper': { - 'label': 'Instapaper', - 'icon': 'fa fa-instapaper', - 'onClick': function(e) { - e.preventDefault(); - window.open('http://www.instapaper.com/text?u='+encodeURIComponent(location.href)); - } - }, - 'vk': { - 'label': 'VK', - 'icon': 'fa fa-vk', - 'onClick': function(e) { - e.preventDefault(); - window.open('http://vkontakte.ru/share.php?url='+encodeURIComponent(location.href)); - } - } - }; - - - - gitbook.events.bind('start', function(e, config) { - var opts = config.sharing; - - // Create dropdown menu - var menu = $.map(opts.all, function(id) { - var site = SITES[id]; - - return { - text: site.label, - onClick: site.onClick - }; - }); - - // Create main button with dropdown - if (menu.length > 0) { - gitbook.toolbar.createButton({ - icon: 'fa fa-share-alt', - label: 'Share', - position: 'right', - dropdown: [menu] - }); - } - - // Direct actions to share - $.each(SITES, function(sideId, site) { - if (!opts[sideId]) return; - - gitbook.toolbar.createButton({ - icon: site.icon, - label: site.text, - position: 'right', - onClick: site.onClick - }); - }); - }); -}); diff --git a/docs/latest/_book/gitbook/gitbook-plugin-theme-cornerstone/cornerstone.css b/docs/latest/_book/gitbook/gitbook-plugin-theme-cornerstone/cornerstone.css deleted file mode 100644 index 329801593..000000000 --- a/docs/latest/_book/gitbook/gitbook-plugin-theme-cornerstone/cornerstone.css +++ /dev/null @@ -1,231 +0,0 @@ -@import url('https://fonts.googleapis.com/css?family=Roboto+Mono|Source+Sans+Pro:300,400,600'); - -body { - letter-spacing: 0; - color: #34495e; - font-family: 'Source Sans Pro', 'Helvetica Neue', Arial, sans-serif; - font-size: 16px; - -webkit-font-smoothing: antialiased; - -moz-osx-font-smoothing: grayscale; - color: #34495e; - background-color: #fff; - margin: 0; -} - -/* LANGS.md index page */ -.book-langs-index { - font-family: 'Source Sans Pro', 'Helvetica Neue', Arial, sans-serif; -} -.book-langs-index .inner .languages { - padding: 20px 0px; -} -.book-langs-index .inner .languages li { - float: none; -} -li a { - color: #42b983; - font-weight: 600; -} - -/* set correct fonts on sidebar and main page */ -.book .book-body .page-wrapper .page-inner section.normal, .book-summary { font-family: 'Source Sans Pro', 'Helvetica Neue', Arial, sans-serif; } - -.page-inner { - max-width: 95%; -} - -/* sidebar */ -.book-summary ul.summary li a, -.book-summary ul.summary li span { - color: #7f8c8d; - font-family: 'Source Sans Pro', 'Helvetica Neue', Arial, sans-serif; -} -.book .book-summary ul.summary li span { - opacity: 0.6; - cursor: not-allowed; -} -.book-summary ul.summary li.active>a { - color: #42b983; - font-weight: 600; -} -#book-search-input { background-color: #fafafa; } -.book-summary { background-color: #fff; } - -/* markdown content found on pages */ -.markdown-section h1, -.markdown-section h2, -.markdown-section h3, -.markdown-section h4, -.markdown-section strong { - font-weight: 600; - color: #2c3e50; -} -.markdown-section a { - color: #42b983; - font-weight: 600; -} -.markdown-section p, -.markdown-section ul, -.markdown-section ol { - word-spacing: 0.05em; -} -.markdown-section em { - color: #7f8c8d; -} - -.markdown-section pre { - padding: 1.2em 1.4em; - line-height: 1.5em; - margin: 0; -} - -.markdown-section code, .markdown-section pre { - font-family: 'Roboto Mono', Monaco, courier, monospace; - -webkit-font-smoothing: initial; - -moz-osx-font-smoothing: initial; - background-color: #f8f8f8; -} -code span.css, -code span.javascript, -code span.html, -span[class^="hljs-"] { - -webkit-font-smoothing: initial; - -moz-osx-font-smoothing: initial; -} -.markdown-section pre>code { - font-size: 1em; - display: block; -} -.markdown-section code:after, .markdown-section code:before { - content: none; - letter-spacing: 0.05em; -} - -code, pre { - font-family: 'Roboto Mono', Monaco, courier, monospace; - font-size: 0.8em; - background-color: #f8f8f8; - -webkit-font-smoothing: initial; - -moz-osx-font-smoothing: initial; -} -code { - color: #e96900; - padding: 3px 5px; - margin: 0 2px; - border-radius: 2px; - white-space: nowrap; -} - -code .token { - min-height: 1.5em; - -webkit-font-smoothing: initial; - -moz-osx-font-smoothing: initial; -} -pre code { position: relative; } -pre code.lang-html:after, -pre code.lang-js:after, -pre code.lang-bash:after, -pre code.lang-css:after { - position: absolute; - top: 0; - right: 0; - color: #ccc; - text-align: right; - font-size: 0.75em; - padding: 5px 10px 0; - line-height: 15px; - height: 15px; - font-weight: 600; -} -pre code.lang-html:after { - content: 'HTML'; -} -pre code.lang-js:after { - content: 'JS'; -} -pre code.lang-bash:after { - content: 'Shell'; -} -pre code.lang-css:after { - content: 'CSS'; -} -.content img { - max-width: 100%; -} -.content span.light { - color: #7f8c8d; -} -.content span.info { - font-size: 0.85em; - display: inline-block; - vertical-align: middle; - width: 280px; - margin-left: 20px; -} -.markdown-section h1 { - margin: 0 0 1em; -} -.markdown-section h2 { - margin: 45px 0 0.8em; - padding-bottom: 0.7em; - border-bottom: 1px solid #ddd; -} -.markdown-section h3 { - margin: 52px 0 1.2em; -} -.markdown-section figure, -.markdown-section p, -.markdown-section ul, -.markdown-section ol { - margin: 1.2em 0; -} -.markdown-section p, -.markdown-section ul, -.markdown-section ol { - line-height: 1.6em; -} -.markdown-section ul, -.markdown-section ol { - padding-left: 1.5em; -} -.markdown-section a { - color: #42b983; - font-weight: 600; -} -.markdown-section blockquote { - margin: 2em 0; - padding-left: 20px; - border-left: 4px solid #42b983; -} -.markdown-section blockquote p { - font-weight: 600; - margin-left: 0; -} -.markdown-section iframe { - margin: 1em 0; -} - -/* these aren't in gitbook at the moment, but leaving them in for future reference */ -img { - border: none; -} -.highlight { - overflow-x: auto; - position: relative; - padding: 0; - background-color: #f8f8f8; - padding: 0.8em 0.8em 0.4em; - line-height: 1.1em; - border-radius: 2px; -} -.highlight table, -.highlight tr, -.highlight td { - width: 100%; - border-collapse: collapse; - padding: 0; - margin: 0; -} -.highlight .gutter { - width: 1.5em; -} diff --git a/docs/latest/_book/gitbook/gitbook.js b/docs/latest/_book/gitbook/gitbook.js deleted file mode 100644 index 13077b45c..000000000 --- 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for your Deploy Preview? - Deploy Preview for Viewer\nIntroduction\nThe Open Health Imaging Foundation is developing an open source framework for constructing web-based medical imaging applications.\nThe OHIF Viewer: A general purpose DICOM Viewer (demo)\n\nThe Open Health Imaging Foundation intends to provide a simple general purpose DICOM Viewer which can be easily extended for specific uses.\n"},"essentials/getting-started.html":{"url":"essentials/getting-started.html","title":"Getting Started","keywords":"","body":"Getting Started\nGetting the Code\nEither clone the repository using Git:\ngit clone git@github.com:OHIF/Viewers.git\n\nor Download the latest Master as a ZIP File.\nTest the archive against our public DICOM server\nSet up and test the OHIF Viewer application:\n\nInstall Node.js\nOpen a new terminal tab in the ohif-viewer directory and install all dependency packages via NPM\ncd Packages-react/ohif-viewer\nnpm install\n\n\nRun the application\nnpm start\n\n\n\nNote: This 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Follow the next section to connect to your own local or remote DICOMWeb server.\n\nLaunch the OHIF Viewer Study List by visiting http://localhost:3000/ in a web browser.\n\nIf everything is working correctly, you should see the studies from our public archive when you visit the Study List.\n\nDouble-click on a Study in the Study List to launch it in the Viewer\nIf everything is working correctly, you should see your study load into the Viewer.\n\n\nSet up a local DICOM server\n\nChoose and install an Image Archive\nUpload some data into your archive (e.g. with DCMTK's storescu or your archive's web interface)\nKeep the server running\n\nOpen Source DICOM Image Archive Options\n\n\n\nArchive\nInstallation\n\n\n\n\nDCM4CHEE Archive 5.x\nInstallation with Docker\n\n\nOrthanc\nInstallation with Docker\n\n\nDICOMcloud (DICOM Web only)\nInstallation\n\n\nOsiriX (Mac OSX only)\n\n\n\nHoros (Mac OSX only)\n\n\n\n\nFeel free to make a Pull Request if you want to add to this list.\nSet up and test the OHIF Viewer application:\n\nInstall Node.js\nOpen a new terminal tab in the ohif-viewer directory and install all dependency packages via NPM\ncd Packages-react/ohif-viewer\nnpm install\n\n\nRun the application using one of the available configuration files.\nREACT_APP_CONFIG=$(cat ../../config-react/ccc.json)\nnpm start\n\nThis uses the Custom Environment Variables of Create-React-App to pass in your configuration. The example above will not work on Windows. Please visit the link to read about how to set environment variables on Windows.\n\nLaunch the OHIF Viewer Study List by visiting http://localhost:3000/ in a web browser.\nIf everything is working correctly, you should see the Study List from your archive when you visit the Study List.\n\nDouble-click on a Study in the Study List to launch it in the Viewer\nIf everything is working correctly, you should see your study load into the Viewer.\n\n\nTroubleshooting\n\nIf you receive a \"No Studies Found\" message and do not see your studies, try changing the Study Date filters to a wider range.\nIf you see a 'Loading' message which never resolves, check your browser JavaScript console inside the Developer Tools to identify any errors.\nIf you see any errors in your server console, check the Troubleshooting page for more in depth advice.\n\n"},"essentials/troubleshooting.html":{"url":"essentials/troubleshooting.html","title":"Troubleshooting","keywords":"","body":"Troubleshooting\nCommon Problems\n\n\n\nProblem\nMost Common Reasons\n\n\n\n\n Can't retrieve Study List over DICOMWeb\n1. QIDO root URL is incorrect 2. DICOM Web is not enabled on PACS\n\n\n Can't retrieve images\n1. WADO Root URL is incorrect 2. DICOM Web is not enabled on PACS 3. HTTP Basic Authentication username and password are incorrect or not provided.\n\n\n\nDebugging Steps\nCan't retrieve Study List over DICOMWeb\n\nCheck that you can query your PACS using an alternative DICOM Web client (e.g. cURL, or a Web Browser). If you cannot, then your PACS is configured incorrectly. Refer to the documentation of the image archive.\n\n"},"connecting-to-image-archives/dicomweb.html":{"url":"connecting-to-image-archives/dicomweb.html","title":"DICOM Web","keywords":"","body":"Connecting to Image Archives\nDICOM Web\nDICOMWeb refers to RESTful DICOM Services and is a recently standardized set of guidelines for exchanging medical images and imaging metadata over the internet. Not all archives fully support it yet, but it is gaining wider adoption.\n"},"I-want-to/script-tag.html":{"url":"I-want-to/script-tag.html","title":"Embed the viewer using a script tag","keywords":"","body":"Embed the viewer using a script tag\n\n\nImportant notes:\n\nYou must correctly specify rootUrl and the HTML tag.\nIf your application runs in a subdirectory (e.g. /viewer/), this must be specified in routerBasename\nCurrently, the WADO Image Loader Codecs and Web Worker source code must also be server at the ROOT URL\n\n"},"faq/general.html":{"url":"faq/general.html","title":"General","keywords":"","body":"Frequently Asked Questions - General\nHow do I file a bug?\nWe accept and triage bug reports through Github primarily.\n\nCreate a Github account\nSearch the current Issue List to ensure you are not creating a duplicate issue.\nIf your issue already exists, post a comment to show us that this issue also affects you.\n\nIf no prior issue exists, Create a New Issue on the repository.\n\n\nSome tips for filing a new issue:\n\nMake sure your issue is reproducible: If we try to reproduce your issue given your provided steps and we cannot reproduce it, we will not be able to fix it. Nobody wants to spend time guessing how to reproduce your issue! Before filing, please reproduce your issue more than once and clearly describe the steps taken.\nIf you are reporting a user interface issue, provide screenshots: A picture is worth a thousand words. If your issue concerns the UI, screenshots will help us identify the issue dramatically faster since it can be extremely challenging to describe UI bugs with text. You should still clearly describe the steps that you took to produce the issue.\nInclude platform & environment: Your operating system, web browser, and web browser version are highly relevant for many bugs. Please provide these with all bug reports.\nInclude expected and actual result: Tell us what you expected to happen, and what actually happened. If you don't do this, we might not consider it a bug.\n\nHow can I request a new feature?\nAt the moment we are in the process of defining our roadmap and will do our best to communicate this to the community. If your requested feature is on the roadmap, then it will most likely be built at some point. If it is not, you are welcome to build it yourself and contribute it. If you have resources and would like to fund the development of a feature, please contact us.\nWho should I contact about Academic Collaborations?\nGordon J. Harris at Massachusetts General Hospital is the primary contact for any academic collaborators. We are always happy to hear about new groups interested in using the OHIF framework, and may be able to provide development support if the proposed collaboration has an impact on cancer research.\nDo you offer commercial support?\nThe Open Health Imaging Foundation does not offer commercial support, however, some community members do offer consulting services. The following contacts may be useful:\n\nRob Lewis (Radical Imaging)\n\nPlease file a Pull Request if you wish to add your name or organization to this list.\nI emailed my question to you directly and you did not respond. Why not?\nEmailing developers directly is not a shortcut to faster support. Please file your issues and questions on Github so that everyone can benefit from the discussion and solutions.\nDo your Viewers have 510(k) Clearance from the U.S. F.D.A or CE Marking from the European Commission?\nNO. The OHIF Viewer, Lesion Tracker, and Standalone Viewer, NOT F.D.A. cleared or CE Marked. It is the users responsibility to ensure compliance with applicable rules and regulations. The License for the OHIF Framework does not prevent your company or group from seeking F.D.A. clearance for a product built using the framework.\nIf you have gone this route (or are going there), please let us know because we would be interested to hear about your experience.\nAre your Viewers HIPAA Compliant?\nNO. The OHIF Viewer, Lesion Tracker, and Standalone Viewer DO NOT fulfill all of the criteria to become HIPAA Compliant. It is the users responsibility to ensure compliance with applicable rules and regulations.\n"},"contributing.html":{"url":"contributing.html","title":"Contributing","keywords":"","body":"Contributing\nI would like to contribute code - how do I do this?\nFork the repository, make your change and submit a pull request.\nAny guidance on submitting changes?\nWhile we do appreciate code contributions, triaging and integrating contributed code changes can be very time consuming. Please consider the following tips when working on your pull requests:\n\nFunctionality is appropriate for the repository. Consider posting on the forum if you are not sure.\nCode quality is acceptable. We don't have coding standards defined, but make sure it passes ESLint and looks like the rest of the code in the repository.\nQuality of design is acceptable. This is a bit subjective so you should consider posting on the forum for specific guidance.\nThe scope of the pull request is not too large. Please consider separate pull requests for each feature as big pull requests are very time consuming to understand.\n\nWe will provide feedback on your pull requests as soon as possible. Following the tips above will help ensure your changes are reviewed.\nTesting contribution pull requests\nOHIF uses netlify so that pull requests are autogenerated and available for testing.\nFor example, this url allows you to test pull request 237, the request that created this FAQ entry, using data pulled from Amazon S3.\nReplacing the number 237 in the link below with your pull request number should let you test it as well and you can use this link for discussions on github without requiring reviewers to download and build your branch.\nhttps://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json\nIf you have made a documentation change, a link like this will let you preview the gitbook generated by the pull request:\nhttps://deploy-preview-237--ohif.netlify.com/contributing.html\n"}}} \ No newline at end of file diff --git a/docs/latest/_book/sitemap.xml b/docs/latest/_book/sitemap.xml deleted file mode 100644 index c0ad35310..000000000 --- a/docs/latest/_book/sitemap.xml +++ /dev/null @@ -1,31 +0,0 @@ - - - https://docs.ohif.org/./ weekly 0.5 - https://docs.ohif.org/essentials/getting-started.html weekly 0.5 - https://docs.ohif.org/essentials/troubleshooting.html weekly 0.5 - https://docs.ohif.org/connecting-to-image-archives/dicomweb.html weekly 0.5 - https://docs.ohif.org/I-want-to/script-tag.html weekly 0.5 - https://docs.ohif.org/faq/general.html weekly 0.5 - https://docs.ohif.org/contributing.html weekly 0.5 - https://docs.ohif.org/./ weekly 0.5 - https://docs.ohif.org/essentials/getting-started.html weekly 0.5 - https://docs.ohif.org/essentials/troubleshooting.html weekly 0.5 - https://docs.ohif.org/connecting-to-image-archives/dicomweb.html weekly 0.5 - https://docs.ohif.org/I-want-to/script-tag.html weekly 0.5 - https://docs.ohif.org/faq/general.html weekly 0.5 - https://docs.ohif.org/contributing.html weekly 0.5 - https://docs.ohif.org/./ weekly 0.5 - https://docs.ohif.org/essentials/getting-started.html weekly 0.5 - https://docs.ohif.org/essentials/troubleshooting.html weekly 0.5 - https://docs.ohif.org/connecting-to-image-archives/dicomweb.html weekly 0.5 - https://docs.ohif.org/I-want-to/script-tag.html weekly 0.5 - https://docs.ohif.org/faq/general.html weekly 0.5 - https://docs.ohif.org/contributing.html weekly 0.5 - https://docs.ohif.org/./ weekly 0.5 - https://docs.ohif.org/essentials/getting-started.html weekly 0.5 - https://docs.ohif.org/essentials/troubleshooting.html weekly 0.5 - https://docs.ohif.org/connecting-to-image-archives/dicomweb.html weekly 0.5 - https://docs.ohif.org/I-want-to/script-tag.html weekly 0.5 - https://docs.ohif.org/faq/general.html weekly 0.5 - https://docs.ohif.org/contributing.html weekly 0.5 - \ No newline at end of file diff --git a/docs/latest/_book/yarn.lock b/docs/latest/_book/yarn.lock deleted file mode 100644 index 4d2441b7c..000000000 --- a/docs/latest/_book/yarn.lock +++ /dev/null @@ -1,3394 +0,0 @@ -# THIS IS AN AUTOGENERATED FILE. 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This script is a workaround. When `gitbook serve` fails, it silently +:: restarts it. +:: https://github.com/GitbookIO/gitbook/issues/1379#issuecomment-288048275 +@Echo off +:Start +call gitbook serve +goto Start \ No newline at end of file