reorganize packages, start converting overall app to react (very broken at the moment)
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Erik Ziegler committed
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@@ -0,0 +1,243 @@
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import { Meteor } from 'meteor/meteor';
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import { OHIF } from 'meteor/ohif:core';
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// Local imports
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import { removeFromArray } from '../lib/removeFromArray';
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/**
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* This class represents a Hanging Protocol at the highest level
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*
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* @type {Protocol}
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*/
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HP.Protocol = class Protocol {
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/**
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* The Constructor for the Class to create a Protocol with the bare
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* minimum information
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*
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* @param name The desired name for the Protocol
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*/
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constructor(name) {
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// Create a new UUID for this Protocol
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this.id = OHIF.utils.guid();
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// Store a value which determines whether or not a Protocol is locked
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// This is probably temporary, since we will eventually have role / user
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// checks for editing. For now we just need it to prevent changes to the
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// default protocols.
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this.locked = false;
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// Boolean value to indicate if the protocol has updated priors information
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// it's set in "updateNumberOfPriorsReferenced" function
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this.hasUpdatedPriorsInformation = false;
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// Apply the desired name
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this.name = name;
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// Set the created and modified dates to Now
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this.createdDate = new Date();
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this.modifiedDate = new Date();
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// If we are logged in while creating this Protocol,
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// store this information as well
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if (OHIF.user && OHIF.user.userLoggedIn && OHIF.user.userLoggedIn()) {
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this.createdBy = OHIF.user.getUserId();
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this.modifiedBy = OHIF.user.getUserId();
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}
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// Create two empty Sets specifying which roles
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// have read and write access to this Protocol
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this.availableTo = new Set();
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this.editableBy = new Set();
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// Define empty arrays for the Protocol matching rules
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// and Stages
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this.protocolMatchingRules = [];
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this.stages = [];
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// Define auxiliary values for priors
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this.numberOfPriorsReferenced = -1;
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}
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getNumberOfPriorsReferenced(skipCache = false) {
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let numberOfPriorsReferenced = skipCache !== true ? this.numberOfPriorsReferenced : -1;
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// Check if information is cached already
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if (numberOfPriorsReferenced > -1) {
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return numberOfPriorsReferenced;
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}
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numberOfPriorsReferenced = 0;
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// Search each study matching rule for prior rules
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// Each stage can have many viewports that can have
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// multiple study matching rules.
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this.stages.forEach(stage => {
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if (!stage.viewports) {
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return;
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}
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stage.viewports.forEach(viewport => {
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if (!viewport.studyMatchingRules) {
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return;
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}
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viewport.studyMatchingRules.forEach(rule => {
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// If the current rule is not a priors rule, it will return -1 then numberOfPriorsReferenced will continue to be 0
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const priorsReferenced = rule.getNumberOfPriorsReferenced();
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if (priorsReferenced > numberOfPriorsReferenced) {
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numberOfPriorsReferenced = priorsReferenced;
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}
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});
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});
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});
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this.numberOfPriorsReferenced = numberOfPriorsReferenced;
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return numberOfPriorsReferenced
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}
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updateNumberOfPriorsReferenced() {
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this.getNumberOfPriorsReferenced(true);
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}
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/**
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* Method to update the modifiedDate when the Protocol
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* has been changed
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*/
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protocolWasModified() {
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// If we are logged in while modifying this Protocol,
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// store this information as well
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if (OHIF.user && OHIF.user.userLoggedIn && OHIF.user.userLoggedIn()) {
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this.modifiedBy = OHIF.user.getUserId();
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}
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// Protocol has been modified, so mark priors information
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// as "outdated"
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this.hasUpdatedPriorsInformation = false;
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// Update number of priors referenced info
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this.updateNumberOfPriorsReferenced();
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// Update the modifiedDate with the current Date/Time
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this.modifiedDate = new Date();
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}
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/**
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* Occasionally the Protocol class needs to be instantiated from a JavaScript Object
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* containing the Protocol data. This function fills in a Protocol with the Object
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* data.
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*
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* @param input A Protocol as a JavaScript Object, e.g. retrieved from MongoDB or JSON
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*/
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fromObject(input) {
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// Check if the input already has an ID
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// If so, keep it. It not, create a new UUID
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this.id = input.id || OHIF.utils.guid();
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// Assign the input name to the Protocol
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this.name = input.name;
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// Retrieve locked status, use !! to make it truthy
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// so that undefined values will be set to false
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this.locked = !!input.locked;
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// TODO: Check how to regenerate Set from Object
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//this.availableTo = new Set(input.availableTo);
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//this.editableBy = new Set(input.editableBy);
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// If the input contains Protocol matching rules
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if (input.protocolMatchingRules) {
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input.protocolMatchingRules.forEach(ruleObject => {
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// Create new Rules from the stored data
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var rule = new HP.ProtocolMatchingRule();
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rule.fromObject(ruleObject);
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// Add them to the Protocol
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this.protocolMatchingRules.push(rule);
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});
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}
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// If the input contains data for various Stages in the
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// display set sequence
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if (input.stages) {
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input.stages.forEach(stageObject => {
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// Create Stages from the stored data
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var stage = new HP.Stage();
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stage.fromObject(stageObject);
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// Add them to the Protocol
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this.stages.push(stage);
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});
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}
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}
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/**
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* Creates a clone of the current Protocol with a new name
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*
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* @param name
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* @returns {Protocol|*}
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*/
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createClone(name) {
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// Create a new JavaScript independent of the current Protocol
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var currentProtocol = Object.assign({}, this);
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// Create a new Protocol to return
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var clonedProtocol = new HP.Protocol();
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// Apply the desired properties
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currentProtocol.id = clonedProtocol.id;
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clonedProtocol.fromObject(currentProtocol);
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// If we have specified a name, assign it
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if (name) {
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clonedProtocol.name = name;
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}
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// Unlock the clone
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clonedProtocol.locked = false;
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// Return the cloned Protocol
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return clonedProtocol;
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}
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/**
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* Adds a Stage to this Protocol's display set sequence
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*
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* @param stage
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*/
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addStage(stage) {
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this.stages.push(stage);
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// Update the modifiedDate and User that last
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// modified this Protocol
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this.protocolWasModified();
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}
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/**
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* Adds a Rule to this Protocol's array of matching rules
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*
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* @param rule
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*/
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addProtocolMatchingRule(rule) {
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this.protocolMatchingRules.push(rule);
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// Update the modifiedDate and User that last
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// modified this Protocol
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this.protocolWasModified();
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}
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/**
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* Removes a Rule from this Protocol's array of matching rules
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*
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* @param rule
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*/
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removeProtocolMatchingRule(rule) {
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var wasRemoved = removeFromArray(this.protocolMatchingRules, rule);
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// Update the modifiedDate and User that last
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// modified this Protocol
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if (wasRemoved) {
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this.protocolWasModified();
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}
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}
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};
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@@ -0,0 +1,172 @@
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import { OHIF } from 'meteor/ohif:core';
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import { comparators } from '../lib/comparators';
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const EQUALS_REGEXP = /^equals$/;
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/**
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* This Class represents a Rule to be evaluated given a set of attributes
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* Rules have:
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* - An attribute (e.g. 'seriesDescription')
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* - A constraint Object, in the form required by Validate.js:
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*
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* rule.constraint = {
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* contains: {
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* value: 'T-1'
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* }
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* };
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*
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* Note: In this example we use the 'contains' Validator, which is a custom Validator defined in Viewerbase
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*
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* - A value for whether or not they are Required to be matched (default: False)
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* - A value for their relative weighting during Protocol or Image matching (default: 1)
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*/
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export class Rule {
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/**
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* The Constructor for the Class to create a Rule with the bare
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* minimum information
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*
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* @param name The desired name for the Rule
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*/
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constructor(attribute, constraint, required, weight) {
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// Create a new UUID for this Rule
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this.id = OHIF.utils.guid();
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// Set the Rule's weight (defaults to 1)
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this.weight = weight || 1;
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// If an attribute is specified, assign it
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if (attribute) {
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this.attribute = attribute;
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}
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// If a constraint is specified, assign it
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if (constraint) {
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this.constraint = constraint;
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}
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// If a value for 'required' is specified, assign it
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if (required === undefined) {
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// If no value was specified, default to False
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this.required = false;
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} else {
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this.required = required;
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}
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// Cache for constraint info object
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this._constraintInfo = void 0;
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// Cache for validator and value object
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this._validatorAndValue = void 0;
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}
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/**
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* Occasionally the Rule class needs to be instantiated from a JavaScript Object.
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* This function fills in a Protocol with the Object data.
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*
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* @param input A Rule as a JavaScript Object, e.g. retrieved from MongoDB or JSON
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*/
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fromObject(input) {
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// Check if the input already has an ID
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// If so, keep it. It not, create a new UUID
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this.id = input.id || OHIF.utils.guid();
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// Assign the specified input data to the Rule
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this.required = input.required;
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this.weight = input.weight;
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this.attribute = input.attribute;
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this.constraint = input.constraint;
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}
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/**
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* Get the constraint info object for the current constraint
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* @return {Object\undefined} Constraint object or undefined if current constraint
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* is not valid or not found in comparators list
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*/
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getConstraintInfo() {
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let constraintInfo = this._constraintInfo;
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// Check if info is cached already
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if (constraintInfo !== void 0) {
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return constraintInfo;
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}
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const ruleConstraint = Object.keys(this.constraint)[0];
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if (ruleConstraint !== void 0) {
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constraintInfo = comparators.find(comparator => ruleConstraint === comparator.id)
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}
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// Cache this information for later use
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this._constraintInfo = constraintInfo;
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return constraintInfo;
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}
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/**
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* Check if current rule is related to priors
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* @return {Boolean} True if a rule is related to priors or false otherwise
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*/
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isRuleForPrior() {
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// @TODO: Should we check this too? this.attribute === 'relativeTime'
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return this.attribute === 'abstractPriorValue';
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}
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/**
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* If the current rule is a rule for priors, returns the number of referenced priors. Otherwise, returns -1.
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* @return {Number} The number of referenced priors or -1 if not applicable. Returns zero if the actual value could not be determined.
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*/
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getNumberOfPriorsReferenced() {
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if (!this.isRuleForPrior()) {
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return -1;
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}
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// Get rule's validator and value
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const ruleValidatorAndValue = this.getConstraintValidatorAndValue();
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const { value, validator } = ruleValidatorAndValue;
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const intValue = parseInt(value, 10) || 0; // avoid possible NaN
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// "Equal to" validators
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if (EQUALS_REGEXP.test(validator)) {
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// In this case, -1 (the oldest prior) indicates that at least one study is used
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return intValue < 0 ? 1 : intValue;
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}
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// Default cases return value
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return 0;
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}
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/**
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* Get the constraint validator and value
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* @return {Object|undefined} Returns an object containing the validator and it's value or undefined
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*/
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getConstraintValidatorAndValue() {
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let validatorAndValue = this._validatorAndValue;
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// Check if validator and value are cached already
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if (validatorAndValue !== void 0) {
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return validatorAndValue;
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}
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// Get the constraint info object
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const constraintInfo = this.getConstraintInfo();
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// Constraint info object exists and is valid
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if (constraintInfo !== void 0) {
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const validator = constraintInfo.validator;
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const currentValidator = this.constraint[validator];
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if (currentValidator) {
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const constraintValidator = constraintInfo.validatorOption;
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const constraintValue = currentValidator[constraintValidator];
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validatorAndValue = {
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value: constraintValue,
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validator: constraintInfo.id
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};
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this._validatorAndValue = validatorAndValue;
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}
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}
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return validatorAndValue;
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}
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}
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@@ -0,0 +1,87 @@
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import { OHIF } from 'meteor/ohif:core';
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/**
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* A Stage is one step in the Display Set Sequence for a Hanging Protocol
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*
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* Stages are defined as a ViewportStructure and an array of Viewports
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*
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* @type {Stage}
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*/
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HP.Stage = class Stage {
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constructor(ViewportStructure, name) {
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// Create a new UUID for this Stage
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this.id = OHIF.utils.guid();
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// Assign the name and ViewportStructure provided
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this.name = name;
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this.viewportStructure = ViewportStructure;
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// Create an empty array for the Viewports
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this.viewports = [];
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// Set the created date to Now
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this.createdDate = new Date();
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}
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/**
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* Creates a clone of the current Stage with a new name
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*
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* Note! This method absolutely cannot be renamed 'clone', because
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* Minimongo's insert method uses 'clone' internally and this
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* somehow causes very bizarre behaviour
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*
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* @param name
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||||
* @returns {Stage|*}
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*/
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createClone(name) {
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// Create a new JavaScript independent of the current Protocol
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var currentStage = Object.assign({}, this);
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// Create a new Stage to return
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||||
var clonedStage = new HP.Stage();
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// Assign the desired properties
|
||||
currentStage.id = clonedStage.id;
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||||
clonedStage.fromObject(currentStage);
|
||||
|
||||
// If we have specified a name, assign it
|
||||
if (name) {
|
||||
clonedStage.name = name;
|
||||
}
|
||||
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||||
// Return the cloned Stage
|
||||
return clonedStage;
|
||||
}
|
||||
|
||||
/**
|
||||
* Occasionally the Stage class needs to be instantiated from a JavaScript Object.
|
||||
* This function fills in a Protocol with the Object data.
|
||||
*
|
||||
* @param input A Stage as a JavaScript Object, e.g. retrieved from MongoDB or JSON
|
||||
*/
|
||||
fromObject(input) {
|
||||
// Check if the input already has an ID
|
||||
// If so, keep it. It not, create a new UUID
|
||||
this.id = input.id || OHIF.utils.guid();
|
||||
|
||||
// Assign the input name to the Stage
|
||||
this.name = input.name;
|
||||
|
||||
// If a ViewportStructure is present in the input, add it from the
|
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// input data
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this.viewportStructure = new HP.ViewportStructure();
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||||
this.viewportStructure.fromObject(input.viewportStructure);
|
||||
|
||||
// If any viewports are present in the input object
|
||||
if (input.viewports) {
|
||||
input.viewports.forEach(viewportObject => {
|
||||
// Create a new Viewport with their data
|
||||
var viewport = new HP.Viewport();
|
||||
viewport.fromObject(viewportObject);
|
||||
|
||||
// Add it to the viewports array
|
||||
this.viewports.push(viewport);
|
||||
});
|
||||
}
|
||||
}
|
||||
};
|
||||
@@ -0,0 +1,81 @@
|
||||
// Local imports
|
||||
import { removeFromArray } from '../lib/removeFromArray';
|
||||
|
||||
/**
|
||||
* This Class defines a Viewport in the Hanging Protocol Stage. A Viewport contains
|
||||
* arrays of Rules that are matched in the ProtocolEngine in order to determine which
|
||||
* images should be hung.
|
||||
*
|
||||
* @type {Viewport}
|
||||
*/
|
||||
HP.Viewport = class Viewport {
|
||||
constructor() {
|
||||
this.viewportSettings = {};
|
||||
this.imageMatchingRules = [];
|
||||
this.seriesMatchingRules = [];
|
||||
this.studyMatchingRules = [];
|
||||
}
|
||||
|
||||
/**
|
||||
* Occasionally the Viewport class needs to be instantiated from a JavaScript Object.
|
||||
* This function fills in a Viewport with the Object data.
|
||||
*
|
||||
* @param input The Viewport as a JavaScript Object, e.g. retrieved from MongoDB or JSON
|
||||
*/
|
||||
fromObject(input) {
|
||||
// If ImageMatchingRules exist, create them from the Object data
|
||||
// and add them to the Viewport's imageMatchingRules array
|
||||
if (input.imageMatchingRules) {
|
||||
input.imageMatchingRules.forEach(ruleObject => {
|
||||
var rule = new HP.ImageMatchingRule();
|
||||
rule.fromObject(ruleObject);
|
||||
this.imageMatchingRules.push(rule);
|
||||
});
|
||||
}
|
||||
|
||||
// If SeriesMatchingRules exist, create them from the Object data
|
||||
// and add them to the Viewport's seriesMatchingRules array
|
||||
if (input.seriesMatchingRules) {
|
||||
input.seriesMatchingRules.forEach(ruleObject => {
|
||||
var rule = new HP.SeriesMatchingRule();
|
||||
rule.fromObject(ruleObject);
|
||||
this.seriesMatchingRules.push(rule);
|
||||
});
|
||||
}
|
||||
|
||||
// If StudyMatchingRules exist, create them from the Object data
|
||||
// and add them to the Viewport's studyMatchingRules array
|
||||
if (input.studyMatchingRules) {
|
||||
input.studyMatchingRules.forEach(ruleObject => {
|
||||
var rule = new HP.StudyMatchingRule();
|
||||
rule.fromObject(ruleObject);
|
||||
this.studyMatchingRules.push(rule);
|
||||
});
|
||||
}
|
||||
|
||||
// If ViewportSettings exist, add them to the current protocol
|
||||
if (input.viewportSettings) {
|
||||
this.viewportSettings = input.viewportSettings;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Finds and removes a rule from whichever array it exists in.
|
||||
* It is not required to specify if it exists in studyMatchingRules,
|
||||
* seriesMatchingRules, or imageMatchingRules
|
||||
*
|
||||
* @param rule
|
||||
*/
|
||||
removeRule(rule) {
|
||||
var array;
|
||||
if (rule instanceof HP.StudyMatchingRule) {
|
||||
array = this.studyMatchingRules;
|
||||
} else if (rule instanceof HP.SeriesMatchingRule) {
|
||||
array = this.seriesMatchingRules;
|
||||
} else if (rule instanceof HP.ImageMatchingRule) {
|
||||
array = this.imageMatchingRules;
|
||||
}
|
||||
|
||||
removeFromArray(array, rule);
|
||||
}
|
||||
};
|
||||
@@ -0,0 +1,53 @@
|
||||
/**
|
||||
* The ViewportStructure class represents the layout and layout properties that
|
||||
* Viewports are displayed in. ViewportStructure has a type, which corresponds to
|
||||
* a layout template, and a set of properties, which depend on the type.
|
||||
*
|
||||
* @type {ViewportStructure}
|
||||
*/
|
||||
HP.ViewportStructure = class ViewportStructure {
|
||||
constructor(type, properties) {
|
||||
this.type = type;
|
||||
this.properties = properties;
|
||||
}
|
||||
|
||||
/**
|
||||
* Occasionally the ViewportStructure class needs to be instantiated from a JavaScript Object.
|
||||
* This function fills in a ViewportStructure with the Object data.
|
||||
*
|
||||
* @param input The ViewportStructure as a JavaScript Object, e.g. retrieved from MongoDB or JSON
|
||||
*/
|
||||
fromObject(input) {
|
||||
this.type = input.type;
|
||||
this.properties = input.properties;
|
||||
}
|
||||
|
||||
/**
|
||||
* Retrieve the layout template name based on the layout type
|
||||
*
|
||||
* @returns {string}
|
||||
*/
|
||||
getLayoutTemplateName() {
|
||||
// Viewport structure can be updated later when we build more complex display layouts
|
||||
switch (this.type) {
|
||||
case 'grid':
|
||||
return 'gridLayout';
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Retrieve the number of Viewports required for this layout
|
||||
* given the layout type and properties
|
||||
*
|
||||
* @returns {string}
|
||||
*/
|
||||
getNumViewports() {
|
||||
// Viewport structure can be updated later when we build more complex display layouts
|
||||
switch (this.type) {
|
||||
case 'grid':
|
||||
// For the typical grid layout, we only need to multiply rows by columns to
|
||||
// obtain the number of viewports
|
||||
return this.properties.rows * this.properties.columns;
|
||||
}
|
||||
}
|
||||
};
|
||||
@@ -0,0 +1,9 @@
|
||||
import { Rule } from '../Rule';
|
||||
|
||||
/**
|
||||
* The ImageMatchingRule class extends the Rule Class.
|
||||
*
|
||||
* At present it does not add any new methods or attributes
|
||||
* @type {ImageMatchingRule}
|
||||
*/
|
||||
HP.ImageMatchingRule = class ImageMatchingRule extends Rule {};
|
||||
@@ -0,0 +1,9 @@
|
||||
import { Rule } from '../Rule';
|
||||
|
||||
/**
|
||||
* The ProtocolMatchingRule Class extends the Rule Class.
|
||||
*
|
||||
* At present it does not add any new methods or attributes
|
||||
* @type {ProtocolMatchingRule}
|
||||
*/
|
||||
HP.ProtocolMatchingRule = class ProtocolMatchingRule extends Rule {};
|
||||
@@ -0,0 +1,9 @@
|
||||
import { Rule } from '../Rule';
|
||||
|
||||
/**
|
||||
* The SeriesMatchingRule Class extends the Rule Class.
|
||||
*
|
||||
* At present it does not add any new methods or attributes
|
||||
* @type {SeriesMatchingRule}
|
||||
*/
|
||||
HP.SeriesMatchingRule = class SeriesMatchingRule extends Rule {};
|
||||
@@ -0,0 +1,9 @@
|
||||
import { Rule } from '../Rule';
|
||||
|
||||
/**
|
||||
* The StudyMatchingRule Class extends the Rule Class.
|
||||
*
|
||||
* At present it does not add any new methods or attributes
|
||||
* @type {StudyMatchingRule}
|
||||
*/
|
||||
HP.StudyMatchingRule = class StudyMatchingRule extends Rule {};
|
||||
Reference in new issue
Block a user