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fix(colormap): update opacityMapping to opacity and use simple list renderer(#3464)

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Co-authored-by: Alireza <ar.sedghi@gmail.com>
This commit is contained in:
Bill Wallace 2023-07-04 11:57:59 -04:00 committed by GitHub
parent ce29bbe795
commit 64f8bb580a
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GPG Key ID: 4AEE18F83AFDEB23
14 changed files with 96 additions and 83 deletions
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6
extensions/cornerstone-dicom-sr/package.json
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@ -44,9 +44,9 @@
}, },
"dependencies": { "dependencies": {
"@babel/runtime": "^7.20.13", "@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.2.4", "@cornerstonejs/adapters": "^1.2.8",
"@cornerstonejs/core": "^1.2.4", "@cornerstonejs/core": "^1.2.8",
"@cornerstonejs/tools": "^1.2.4", "@cornerstonejs/tools": "^1.2.8",
"classnames": "^2.3.2" "classnames": "^2.3.2"
} }
} }

10
extensions/cornerstone/package.json
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@ -36,7 +36,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2", "@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.2.4", "@cornerstonejs/dicom-image-loader": "^1.2.8",
"@ohif/core": "3.7.0-beta.21", "@ohif/core": "3.7.0-beta.21",
"@ohif/ui": "3.7.0-beta.21", "@ohif/ui": "3.7.0-beta.21",
"dcmjs": "^0.29.6", "dcmjs": "^0.29.6",
@ -52,10 +52,10 @@
}, },
"dependencies": { "dependencies": {
"@babel/runtime": "^7.20.13", "@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.2.4", "@cornerstonejs/adapters": "^1.2.8",
"@cornerstonejs/core": "^1.2.4", "@cornerstonejs/core": "^1.2.8",
"@cornerstonejs/streaming-image-volume-loader": "^1.2.4", "@cornerstonejs/streaming-image-volume-loader": "^1.2.8",
"@cornerstonejs/tools": "^1.2.4", "@cornerstonejs/tools": "^1.2.8",
"@kitware/vtk.js": "27.3.1", "@kitware/vtk.js": "27.3.1",
"html2canvas": "^1.4.1", "html2canvas": "^1.4.1",
"lodash.debounce": "4.0.8", "lodash.debounce": "4.0.8",

1
extensions/cornerstone/src/index.tsx
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@ -24,7 +24,6 @@ import { toolNames } from './initCornerstoneTools';
import { getEnabledElement, reset as enabledElementReset } from './state'; import { getEnabledElement, reset as enabledElementReset } from './state';
import dicomLoaderService from './utils/dicomLoaderService'; import dicomLoaderService from './utils/dicomLoaderService';
import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement'; import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement';
import { registerColormap } from './utils/colormap/transferFunctionHelpers';
import { id } from './id'; import { id } from './id';
import * as csWADOImageLoader from './initWADOImageLoader.js'; import * as csWADOImageLoader from './initWADOImageLoader.js';

2
extensions/default/src/Toolbar/Toolbar.tsx
View File

@ -29,7 +29,7 @@ export default function Toolbar({ servicesManager }) {
return ( return (
<> <>
{toolbarButtons.map((toolDef, index) => { {toolbarButtons.map(toolDef => {
const { id, Component, componentProps } = toolDef; const { id, Component, componentProps } = toolDef;
// TODO: ... // TODO: ...

4
extensions/measurement-tracking/package.json
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@ -30,8 +30,8 @@
"start": "yarn run dev" "start": "yarn run dev"
}, },
"peerDependencies": { "peerDependencies": {
"@cornerstonejs/core": "^1.2.4", "@cornerstonejs/core": "^1.2.8",
"@cornerstonejs/tools": "^1.2.4", "@cornerstonejs/tools": "^1.2.8",
"@ohif/core": "3.7.0-beta.21", "@ohif/core": "3.7.0-beta.21",
"@ohif/extension-cornerstone-dicom-sr": "3.7.0-beta.21", "@ohif/extension-cornerstone-dicom-sr": "3.7.0-beta.21",
"@ohif/ui": "3.7.0-beta.21", "@ohif/ui": "3.7.0-beta.21",

11
extensions/tmtv/src/commandsModule.js
View File

@ -553,7 +553,16 @@ const commandsModule = ({
commandsManager.runCommand('setViewportColormap', { commandsManager.runCommand('setViewportColormap', {
viewportIndex, viewportIndex,
displaySetInstanceUID: ptDisplaySet.displaySetInstanceUID, displaySetInstanceUID: ptDisplaySet.displaySetInstanceUID,
colormap, colormap: {
name: colormap,
// TODO: This opacity mapping matches that in hpViewports, but
// ideally making this editable in a side panel would be useful
opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 0.9 },
{ value: 1, opacity: 0.95 },
],
},
}); });
viewports.push( viewports.push(

24
extensions/tmtv/src/utils/hpViewports.ts
View File

@ -254,16 +254,20 @@ const fusionAXIAL = {
id: 'ctDisplaySet', id: 'ctDisplaySet',
}, },
{ {
id: 'ptDisplaySet',
options: { options: {
colormap: { colormap: {
name: 'hsv', name: 'hsv',
opacityMapping: [{ value: 0.1, opacity: 0.9 }], opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 0.9 },
{ value: 1, opacity: 0.95 },
],
}, },
voi: { voi: {
custom: 'getPTVOIRange', custom: 'getPTVOIRange',
}, },
}, },
id: 'ptDisplaySet',
}, },
], ],
}; };
@ -310,16 +314,20 @@ const fusionSAGITTAL = {
id: 'ctDisplaySet', id: 'ctDisplaySet',
}, },
{ {
id: 'ptDisplaySet',
options: { options: {
colormap: { colormap: {
name: 'hsv', name: 'hsv',
opacityMapping: [{ value: 0.1, opacity: 0.9 }], opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 0.9 },
{ value: 1, opacity: 0.95 },
],
}, },
voi: { voi: {
custom: 'getPTVOIRange', custom: 'getPTVOIRange',
}, },
}, },
id: 'ptDisplaySet',
}, },
], ],
}; };
@ -366,16 +374,20 @@ const fusionCORONAL = {
id: 'ctDisplaySet', id: 'ctDisplaySet',
}, },
{ {
id: 'ptDisplaySet',
options: { options: {
colormap: { colormap: {
name: 'hsv', name: 'hsv',
opacityMapping: [{ value: 0.1, opacity: 0.9 }], opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 0.9 },
{ value: 1, opacity: 0.95 },
],
}, },
voi: { voi: {
custom: 'getPTVOIRange', custom: 'getPTVOIRange',
}, },
}, },
id: 'ptDisplaySet',
}, },
], ],
}; };

16
modes/tmtv/src/toolbarButtons.js
View File

@ -24,9 +24,8 @@ function _createButton(type, id, icon, label, commands, tooltip) {
function _createColormap(label, colormap) { function _createColormap(label, colormap) {
return { return {
id: label.toString(), id: label,
title: label, label,
subtitle: label,
type: 'action', type: 'action',
commands: [ commands: [
{ {
@ -36,13 +35,6 @@ function _createColormap(label, colormap) {
colormap, colormap,
}, },
}, },
{
commandName: 'setFusionPTColormap',
commandOptions: {
toolGroupId: toolGroupIds.Fusion,
colormap,
},
},
], ],
}; };
} }
@ -313,7 +305,8 @@ const toolbarButtons = [
commandName: 'displayNotification', commandName: 'displayNotification',
commandOptions: { commandOptions: {
title: 'RectangleROI Threshold Tip', title: 'RectangleROI Threshold Tip',
text: 'RectangleROI Threshold tool should be used on PT Axial Viewport', text:
'RectangleROI Threshold tool should be used on PT Axial Viewport',
type: 'info', type: 'info',
}, },
}, },
@ -345,7 +338,6 @@ const toolbarButtons = [
tooltip: 'PET Image Colormap', tooltip: 'PET Image Colormap',
}, },
isAction: true, // ? isAction: true, // ?
renderer: WindowLevelMenuItem,
items: [ items: [
_createColormap('HSV', 'hsv'), _createColormap('HSV', 'hsv'),
_createColormap('Hot Iron', 'hot_iron'), _createColormap('Hot Iron', 'hot_iron'),

2
package.json
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@ -149,7 +149,7 @@
] ]
}, },
"resolutions": { "resolutions": {
"@cornerstonejs/core": "^1.2.4", "@cornerstonejs/core": "^1.2.8",
"**/@babel/runtime": "^7.20.13", "**/@babel/runtime": "^7.20.13",
"commander": "8.3.0", "commander": "8.3.0",
"nth-check": "^2.1.1", "nth-check": "^2.1.1",

2
platform/app/package.json
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@ -51,7 +51,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2", "@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.2.4", "@cornerstonejs/dicom-image-loader": "^1.2.8",
"@ohif/core": "3.7.0-beta.21", "@ohif/core": "3.7.0-beta.21",
"@ohif/extension-cornerstone": "3.7.0-beta.21", "@ohif/extension-cornerstone": "3.7.0-beta.21",
"@ohif/extension-cornerstone-dicom-rt": "3.7.0-beta.21", "@ohif/extension-cornerstone-dicom-rt": "3.7.0-beta.21",

2
platform/core/package.json
View File

@ -35,7 +35,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2", "@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.2.4", "@cornerstonejs/dicom-image-loader": "^1.2.8",
"@ohif/ui": "3.7.0-beta.21", "@ohif/ui": "3.7.0-beta.21",
"cornerstone-math": "0.1.9", "cornerstone-math": "0.1.9",
"dicom-parser": "^1.8.21" "dicom-parser": "^1.8.21"

49
platform/core/src/defaults/hotkeyBindings.js
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@ -173,30 +173,31 @@ const bindings = [
label: 'W/L Preset 5', label: 'W/L Preset 5',
keys: ['5'], keys: ['5'],
}, },
{ // These don't exist, so don't try applying them....
commandName: 'setWindowLevel', // {
commandOptions: windowLevelPresets[6], // commandName: 'setWindowLevel',
label: 'W/L Preset 6', // commandOptions: windowLevelPresets[6],
keys: ['6'], // label: 'W/L Preset 6',
}, // keys: ['6'],
{ // },
commandName: 'setWindowLevel', // {
commandOptions: windowLevelPresets[7], // commandName: 'setWindowLevel',
label: 'W/L Preset 7', // commandOptions: windowLevelPresets[7],
keys: ['7'], // label: 'W/L Preset 7',
}, // keys: ['7'],
{ // },
commandName: 'setWindowLevel', // {
commandOptions: windowLevelPresets[8], // commandName: 'setWindowLevel',
label: 'W/L Preset 8', // commandOptions: windowLevelPresets[8],
keys: ['8'], // label: 'W/L Preset 8',
}, // keys: ['8'],
{ // },
commandName: 'setWindowLevel', // {
commandOptions: windowLevelPresets[9], // commandName: 'setWindowLevel',
label: 'W/L Preset 9', // commandOptions: windowLevelPresets[9],
keys: ['9'], // label: 'W/L Preset 9',
}, // keys: ['9'],
// },
]; ];
export default bindings; export default bindings;

4
platform/docs/docs/platform/extensions/modules/hpModule.md
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@ -246,7 +246,7 @@ A list of criteria for the protocol along with the provided points for ranking.
- `constraint`: the constraint that needs to be satisfied for the attribute. It accepts a `validator` which can be - `constraint`: the constraint that needs to be satisfied for the attribute. It accepts a `validator` which can be
[`equals`, `doesNotEqual`, `contains`, `doesNotContain`, `startsWith`, `endsWidth`] [`equals`, `doesNotEqual`, `contains`, `doesNotContain`, `startsWith`, `endsWidth`]
- | Rule | Single Value | Array Value | Example | - | Rule | Single Value | Array Value | Example |
|--- |--- |--- |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| |--- |--- |--- |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| equals | === | All members are === in same order | value = ['abc', 'def', 'GHI']<br/>testValue = 'abc' (Fail)<br/><br/> = ['abc'] (Fail)<br/><br/> = ['abc', 'def', 'GHI'] (Valid)<br/><br/> = ['abc', 'GHI', 'def'] (Fail)<br/><br/> = ['abc', 'def'] (Fail)<br/><br/>value = 'Attenuation Corrected'<br/>testValue = 'Attenuation Corrected' (Valid)<br/> = 'Attenuation' (Fail)<br/><br/> value = ['Attenuation Corrected'] <br/> testValue = ['Attenuation Corrected'] (Valid)<br/> = 'Attenuation Corrected' (Valid) <br/> = 'Attenuation' (Fail) <br/> | | equals | === | All members are === in same order | value = ['abc', 'def', 'GHI']<br/>testValue = 'abc' (Fail)<br/><br/> = ['abc'] (Fail)<br/><br/> = ['abc', 'def', 'GHI'] (Valid)<br/><br/> = ['abc', 'GHI', 'def'] (Fail)<br/><br/> = ['abc', 'def'] (Fail)<br/><br/>value = 'Attenuation Corrected'<br/>testValue = 'Attenuation Corrected' (Valid)<br/> = 'Attenuation' (Fail)<br/><br/> value = ['Attenuation Corrected'] <br/> testValue = ['Attenuation Corrected'] (Valid)<br/> = 'Attenuation Corrected' (Valid) <br/> = 'Attenuation' (Fail) <br/> |
@ -439,7 +439,7 @@ As you can see in the hanging protocol we defined three viewports (but only show
- `options` (optional): options for the display set - `options` (optional): options for the display set
- voi: windowing options for the display set (optional: windowWidth, windowCenter) - voi: windowing options for the display set (optional: windowWidth, windowCenter)
- voiInverted: whether the VOI is inverted or not (optional) - voiInverted: whether the VOI is inverted or not (optional)
- colormap: colormap for the display set (optional, it is an object with `{ name }` and optional extra `opacityMapping` property) - colormap: colormap for the display set (optional, it is an object with `{ name }` and optional extra `opacity` property)
- displayPreset: display preset for the display set (optional, used for 3D volume rendering. e.g., 'CT-Bone') - displayPreset: display preset for the display set (optional, used for 3D volume rendering. e.g., 'CT-Bone')

46
yarn.lock
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@ -1589,10 +1589,10 @@
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resolved "https://registry.npmjs.org/@cornerstonejs/adapters/-/adapters-1.2.4.tgz#9920ca4cae2acf064ba3165cde6da67123fbc25e" resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-1.2.8.tgz#26e584971b917dd099a73511abde32f236655915"
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dcmjs "^0.29.5" dcmjs "^0.29.5"
@ -1640,43 +1640,43 @@
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