fix: image slices are displayed in reverse order, if we switch from common layout to 2D MPR (#5022)

extensions/default/src/customizations/instanceSortingCriteriaCustomization.ts

@@ -0,0 +1,6 @@
+export default {
+  instanceSortingCriteria: {
+    sortFunctions: {},
+    defaultSortFunctionName: '',
+  },
+};

extensions/default/src/getCustomizationModule.tsx

@@ -22,6 +22,7 @@ import userPreferencesCustomization from './customizations/userPreferencesCustom
 import reportDialogCustomization from './customizations/reportDialogCustomization';
 import hotkeyBindingsCustomization from './customizations/hotkeyBindingsCustomization';
 import onboardingCustomization from './customizations/onboardingCustomization';
+import instanceSortingCriteriaCustomization from './customizations/instanceSortingCriteriaCustomization';
 /**
  *
  * Note: this is an example of how the customization module can be used
@@ -69,6 +70,7 @@ export default function getCustomizationModule({ servicesManager, extensionManag
         ...reportDialogCustomization,
         ...hotkeyBindingsCustomization,
         ...onboardingCustomization,
+        ...instanceSortingCriteriaCustomization,
       },
     },
   ];

extensions/default/src/getSopClassHandlerModule.js

@@ -127,7 +127,10 @@ const makeDisplaySet = instances => {
     FrameOfReferenceUID: instance.FrameOfReferenceUID,
   });
 
-  imageSet.sortBy(instancesSortCriteria.default);
+  const { servicesManager } = appContext;
+  const { customizationService } = servicesManager.services;
+
+  imageSet.sort(customizationService);
 
   // Include the first image instance number (after sorted)
   /*imageSet.setAttribute(

extensions/default/src/utils/validations/areAllImagePositionsEqual.ts

@@ -1,7 +1,9 @@
 import { vec3 } from 'gl-matrix';
 import toNumber from '@ohif/core/src/utils/toNumber';
 import { _getPerpendicularDistance } from '@ohif/core/src/utils/isDisplaySetReconstructable';
-import calculateScanAxisNormal from '../calculateScanAxisNormal';
+import { utils } from '@ohif/core';
+
+const { calculateScanAxisNormal } = utils;
 
 /**
  * Checks if there is a position shift between consecutive frames

platform/app/cypress/integration/measurement-tracking/OHIFCornerstoneHotkeys.spec.js

@@ -18,32 +18,32 @@ describe('OHIF Cornerstone Hotkeys', () => {
 
   it('checks if hotkeys "R" and "L" can rotate the image', () => {
     cy.get('body').type('R');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'P');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'F');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'R');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
     // Hotkey L
     cy.get('body').type('L');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'R');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'A');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'H');
   });
 
   it('checks if hotkeys "ArrowUp" and "ArrowDown" can navigate in the stack', () => {
     // Hotkey ArrowDown
     cy.get('body').type('{downarrow}');
-    cy.get('@viewportInfoBottomRight').should('contains.text', 'I:2 (2/26)');
+    cy.get('@viewportInfoBottomRight').should('contains.text', 'I:11 (2/26)');
     // Hotkey ArrowUp
     cy.get('body').type('{uparrow}');
-    cy.get('@viewportInfoBottomRight').should('contains.text', 'I:1 (1/26)');
+    cy.get('@viewportInfoBottomRight').should('contains.text', 'I:10 (1/26)');
   });
 
   it('checks if hotkeys "V" and "H" can flip the image', () => {
     // Hotkey H
     cy.get('body').type('h');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'L');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'P');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'H');
     // Hotkey V
     cy.get('body').type('v');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'L');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'P');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'P');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'F');
   });
 
   // it('checks if hotkeys "+", "-" and "=" can zoom in, out and fit to viewport', () => {
@@ -68,13 +68,13 @@ describe('OHIF Cornerstone Hotkeys', () => {
   it('checks if hotkey "SPACEBAR" can reset the image', () => {
     // Press multiples hotkeys
     cy.get('body').type('v+++i');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'R');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'A');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'P');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'F');
 
     // Hotkey SPACEBAR
     cy.get('body').type(' ');
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'R');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'A');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'H');
   });
 
   /*

platform/app/cypress/integration/measurement-tracking/OHIFCornerstoneToolbar.spec.js

@@ -85,7 +85,7 @@ describe('OHIF Cornerstone Toolbar', () => {
     // The exact text is slightly dependent on the viewport resolution, so leave a range
     cy.get('@viewportInfoBottomLeft').should($txt => {
       const text = $txt.text();
-      expect(text).to.include('L:479');
+      expect(text).to.include('L:288');
     });
   });
 
@@ -143,7 +143,7 @@ describe('OHIF Cornerstone Toolbar', () => {
     //Click on reset button
     cy.resetViewport();
 
-    const expectedText = 'W:958L:479';
+    const expectedText = 'W:576L:288';
     cy.get('@viewportInfoBottomLeft').should('have.text', expectedText);
   });
 
@@ -412,8 +412,8 @@ describe('OHIF Cornerstone Toolbar', () => {
   });
 */
   it('check if Flip tool will flip the image in the viewport', () => {
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'R');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'A');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'H');
 
     //Click on More button
     cy.get('@moreBtnSecondary').click();
@@ -421,8 +421,8 @@ describe('OHIF Cornerstone Toolbar', () => {
     //Click on Flip button
     cy.get('[data-cy="flipHorizontal"]').click();
     cy.waitDicomImage();
-    cy.get('@viewportInfoMidLeft').should('contains.text', 'L');
+    cy.get('@viewportInfoMidLeft').should('contains.text', 'P');
-    cy.get('@viewportInfoMidTop').should('contains.text', 'A');
+    cy.get('@viewportInfoMidTop').should('contains.text', 'H');
   });
 
   // it('checks if stack sync is preserved on new display set and uses FOR', () => {

platform/core/src/classes/ImageSet.ts

@@ -1,15 +1,16 @@
+import { Types as csTypes } from '@cornerstonejs/core';
 import guid from '../utils/guid.js';
-import { Vector3 } from 'cornerstone-math';
+import {
+  instancesSortCriteria,
+  isValidForPositionSort,
+  sortImagesByPatientPosition,
+} from '../utils/sortStudy';
 
 type Attributes = Record<string, unknown>;
-type Image = {
+export type Image = {
   StudyInstanceUID?: string;
-  getData(): {
+  ImagePositionPatient?: csTypes.Point3;
-    metadata: {
+  ImageOrientationPatient?: csTypes.Point3;
-      ImagePositionPatient: number[];
-      ImageOrientationPatient: number[];
-    };
-  };
 };
 
 /**
@@ -79,63 +80,46 @@ class ImageSet {
     return this.images[index];
   }
 
+  /**
+   * Default image sorting. Sorts by the following (in order of priority)
+   * 1. Image position (if ImagePositionPatient and ImageOrientationPatient are defined)
+   * 2. Sort by a provided sortingCallback Criteria
+   * Note: Images are sorted in-place and a reference to the sorted image array is returned.
+   *
+   * @returns images - reference to images after sorting
+   */
+  sort(customizationService): Image[] {
+    // Check instanceSort customization
+    const customizedSortingCriteria =
+      customizationService.getCustomization('instanceSortingCriteria');
+    const combinedSortFunctions = Object.assign(
+      {},
+      instancesSortCriteria,
+      customizedSortingCriteria.sortFunctions
+    );
+    const userSpecifiedCriteria = customizedSortingCriteria.defaultSortFunctionName;
+    // Prefer customized sort function when available
+    if (typeof combinedSortFunctions[userSpecifiedCriteria] === 'function') {
+      return this.images.sort(combinedSortFunctions[userSpecifiedCriteria]);
+    }
+    // If image position patient is not available, sort by InstanceNumber
+    if (!isValidForPositionSort(this.images)) {
+      return this.images.sort(instancesSortCriteria.sortByInstanceNumber);
+    }
+    // Do image position patient sorting as default sort
+    return sortImagesByPatientPosition(this.images);
+  }
+
+  /**
+   * Sort using the provided callback function.
+   * Note: Images are sorted in-place and a reference to the sorted image array is returned.
+   *
+   * @param sortingCallback - sorting function
+   * @returns images - reference to images after sorting
+   */
   sortBy(sortingCallback: (a: Image, b: Image) => number): Image[] {
     return this.images.sort(sortingCallback);
   }
-
-  sortByImagePositionPatient(): void {
-    const images = this.images;
-    const referenceImagePositionPatient = _getImagePositionPatient(images[0]);
-
-    const refIppVec = new Vector3(
-      referenceImagePositionPatient[0],
-      referenceImagePositionPatient[1],
-      referenceImagePositionPatient[2]
-    );
-
-    const ImageOrientationPatient = _getImageOrientationPatient(images[0]);
-
-    const scanAxisNormal = new Vector3(
-      ImageOrientationPatient[0],
-      ImageOrientationPatient[1],
-      ImageOrientationPatient[2]
-    ).cross(
-      new Vector3(
-        ImageOrientationPatient[3],
-        ImageOrientationPatient[4],
-        ImageOrientationPatient[5]
-      )
-    );
-
-    const distanceImagePairs = images.map(function (image: Image) {
-      const ippVec = new Vector3(..._getImagePositionPatient(image));
-      const positionVector = refIppVec.clone().sub(ippVec);
-      const distance = positionVector.dot(scanAxisNormal);
-
-      return {
-        distance,
-        image,
-      };
-    });
-
-    distanceImagePairs.sort(function (a, b) {
-      return b.distance - a.distance;
-    });
-
-    const sortedImages = distanceImagePairs.map(a => a.image);
-
-    images.sort(function (a, b) {
-      return sortedImages.indexOf(a) - sortedImages.indexOf(b);
-    });
-  }
-}
-
-function _getImagePositionPatient(image) {
-  return image.getData().metadata.ImagePositionPatient;
-}
-
-function _getImageOrientationPatient(image) {
-  return image.getData().metadata.ImageOrientationPatient;
 }
 
 export default ImageSet;

platform/core/src/utils/index.ts

@@ -43,6 +43,7 @@ import { createStudyBrowserTabs } from './createStudyBrowserTabs';
 import { sopClassDictionary } from './sopClassDictionary';
 import * as MeasurementFilters from './measurementFilters';
 import getClosestOrientationFromIOP from './getClosestOrientationFromIOP';
+import calculateScanAxisNormal from './calculateScanAxisNormal';
 // Commented out unused functionality.
 // Need to implement new mechanism for derived displaySets using the displaySetManager.
 
@@ -91,6 +92,7 @@ const utils = {
   createStudyBrowserTabs,
   MeasurementFilters,
   getClosestOrientationFromIOP,
+  calculateScanAxisNormal,
 };
 
 export {

platform/core/src/utils/sortStudy.ts

@@ -1,4 +1,6 @@
+import { vec3 } from 'gl-matrix';
 import isLowPriorityModality from './isLowPriorityModality';
+import calculateScanAxisNormal from './calculateScanAxisNormal';
 
 const compareSeriesDateTime = (a, b) => {
   const seriesDateA = Date.parse(`${a.seriesDate ?? a.SeriesDate} ${a.seriesTime ?? a.SeriesTime}`);
@@ -41,8 +43,7 @@ const seriesSortCriteria = {
   seriesInfoSortingCriteria,
 };
 
-const instancesSortCriteria = {
+const sortByInstanceNumber = (a, b) => {
-  default: (a, b) => {
   // Sort by InstanceNumber (0020,0013)
   const aInstance = parseInt(a.InstanceNumber) || 0;
   const bInstance = parseInt(b.InstanceNumber) || 0;
@@ -54,7 +55,11 @@ const instancesSortCriteria = {
     return 0;
   }
   return a.SOPInstanceUID < b.SOPInstanceUID ? -1 : 1;
-  },
+};
+
+const instancesSortCriteria = {
+  default: sortByInstanceNumber,
+  sortByInstanceNumber,
 };
 
 const sortingCriteria = {
@@ -128,6 +133,55 @@ export default function sortStudy(
   return study;
 }
 
+function isValidForPositionSort(images): boolean {
+  if (images.length <= 1) {
+    return false; // No need to sort if there's only one image
+  }
+
+  // Use the first image as a reference
+  const referenceImagePositionPatient = images[0].ImagePositionPatient;
+  const imageOrientationPatient = images[0].ImageOrientationPatient;
+
+  if (!referenceImagePositionPatient || !imageOrientationPatient) {
+    return false;
+  }
+  return true;
+}
+
+/**
+ * Sort by image position, calculated using imageOrientationPatient and ImagePositionPatient
+ * If imageOrientationPatient or ImagePositionPatient is not available, Images will be sorted by the provided sortingCriteria
+ * Note: Images are sorted in-place and a reference to the sorted image array is returned.
+ *
+ * @returns images - reference to images after sorting
+ */
+const sortImagesByPatientPosition = images => {
+  const referenceImagePositionPatient = images[0].ImagePositionPatient;
+  const imageOrientationPatient = images[0].ImageOrientationPatient;
+
+  // Calculate the scan axis normal using the cross product
+  const scanAxisNormal = calculateScanAxisNormal(imageOrientationPatient);
+
+  // Compute distances from each image to the reference image
+  const distanceInstancePairs = images.map(image => {
+    const imagePositionPatient = image.ImagePositionPatient;
+    const deltaVector = vec3.create();
+    const distance = vec3.dot(
+      scanAxisNormal,
+      vec3.subtract(deltaVector, imagePositionPatient, referenceImagePositionPatient)
+    );
+    return { distance, image };
+  });
+  // Sort images based on the computed distances
+  distanceInstancePairs.sort((a, b) => b.distance - a.distance);
+  // Reorder the images in the original array
+  for (const [index, item] of distanceInstancePairs.entries()) {
+    images[index] = item.image;
+  }
+
+  return images;
+};
+
 export {
   sortStudy,
   sortStudySeries,
@@ -135,4 +189,6 @@ export {
   sortingCriteria,
   seriesSortCriteria,
   instancesSortCriteria,
+  isValidForPositionSort,
+  sortImagesByPatientPosition,
 };

platform/docs/docs/migration-guide/3p10-to-3p11/other.md

@@ -26,3 +26,17 @@ summary: Migration guide for OHIF 3.11 additional changes
     +   extensionsManager
     + });
     ```
+
+**Images sort by position patient**
+
+The ImageSet sort has been modified: images are now sorted by ImagePositionPatient by default. If ImagePositionPatient is not available, the sort will fall back to InstanceNumber.
+
+**To revert to the previous sorting method, you can add the customization instanceSortingCriteria as shown below:**
+
+```
+    customizationService.setCustomizations({
+        'instanceSortingCriteria': {
+          $set: {defaultSortFunctionName: 'default'},
+        },
+      });
+```

platform/docs/docs/platform/services/customization-service/sampleCustomizations.tsx

@@ -1818,6 +1818,31 @@ window.config = {
                 };
         },
     }],
+};
+  `,
+  },
+  {
+    id: 'instanceSortingCriteria',
+    description: 'Defines the instance sorting criteria to sort the images',
+    default: `{
+    sortFunctions: {},
+    defaultSortFunctionName: '',
+  }`,
+    configuration: `
+window.config = {
+  // rest of window config
+  customizationService: [
+   {
+      'instanceSortingCriteria': {
+        $set: {
+          sortFunctions: {
+            sort: (a, b) => {}
+          },
+          defaultSortFunctionName: 'sort',
+        },
+      },
+    }
+  ],
 };
   `,
   },

tests/JumpToMeasurementMPR.spec.ts

@@ -4,7 +4,7 @@ import { visitStudy, checkForScreenshot, screenShotPaths, simulateClicksOnElemen
 test.beforeEach(async ({ page }) => {
   const studyInstanceUID = '1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5';
   const mode = 'viewer';
-  await visitStudy(page, studyInstanceUID, mode, 2000);
+  await visitStudy(page, studyInstanceUID, mode, 5000);
 });
 
 test('should hydrate in MPR correctly', async ({ page }) => {
@@ -15,6 +15,8 @@ test('should hydrate in MPR correctly', async ({ page }) => {
 
   await page.locator(':text("S:7")').first().dblclick();
 
+  await page.waitForTimeout(5000);
+
   await page.evaluate(() => {
     // Access cornerstone directly from the window object
     const cornerstone = window.cornerstone;
@@ -34,6 +36,8 @@ test('should hydrate in MPR correctly', async ({ page }) => {
     }
   });
 
+  await page.waitForTimeout(5000);
+
   await page.getByTestId('MeasurementTools-split-button-secondary').click();
   await page.getByTestId('Bidirectional').click();
   const locator = page.getByTestId('viewport-pane').locator('canvas');
@@ -80,8 +84,8 @@ test('should hydrate in MPR correctly', async ({ page }) => {
     }
   });
 
-  // wait 2 seconds
+  // wait 5 seconds
-  await page.waitForTimeout(2000);
+  await page.waitForTimeout(5000);
 
   await checkForScreenshot(page, page, screenShotPaths.jumpToMeasurementMPR.scrollAway);
 
@@ -92,8 +96,8 @@ test('should hydrate in MPR correctly', async ({ page }) => {
   await page.getByTestId('Layout').click();
   await page.locator('div').filter({ hasText: /^MPR$/ }).first().click();
 
-  // wait 2 seconds
+  // wait 5 seconds
-  await page.waitForTimeout(2000);
+  await page.waitForTimeout(5000);
 
   // jump in viewport again
   await page.getByTestId('data-row').first().click();
@@ -104,6 +108,8 @@ test('should hydrate in MPR correctly', async ({ page }) => {
 
   await page.locator(':text("S:3")').first().dblclick();
 
+  await page.waitForTimeout(5000);
+
   await checkForScreenshot(page, page, screenShotPaths.jumpToMeasurementMPR.changeSeriesInMPR);
 
   await page.getByTestId('data-row').first().click();