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OHIF with Cornerstone3D 2.0 (#4347)

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Alireza authored and GitHub committed 2024-11-06 07:15:27 -05:00
1 parent 8981a61b8c
commit 7ce7127d7c
803 files changed
+32760 -15893
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modes/longitudinal/src/customizations.tsx
+26
View File
@@ -0,0 +1,26 @@
export const performCustomizations = customizationService => {
// Set the custom SegmentationTable
customizationService.addModeCustomizations([
// To disable editing in the SegmentationTable
{
id: 'PanelSegmentation.disableEditing',
disableEditing: true,
},
// To disable editing in the MeasurementTable
// {
// id: 'PanelMeasurement.disableEditing',
// disableEditing: true,
// },
// {
// id: 'measurementLabels',
// labelOnMeasure: true,
// exclusive: true,
// items: [
// { value: 'Head', label: 'Head' },
// { value: 'Shoulder', label: 'Shoulder' },
// { value: 'Knee', label: 'Knee' },
// { value: 'Toe', label: 'Toe' },
// ],
// },
]);
};
modes/longitudinal/src/index.ts
+8 -23
View File
@@ -4,6 +4,7 @@ import { id } from './id';
import initToolGroups from './initToolGroups';
import toolbarButtons from './toolbarButtons';
import moreTools from './moreTools';
import { performCustomizations } from './customizations';
// Allow this mode by excluding non-imaging modalities such as SR, SEG
// Also, SM is not a simple imaging modalities, so exclude it.
@@ -15,7 +16,11 @@ const ohif = {
thumbnailList: '@ohif/extension-default.panelModule.seriesList',
wsiSopClassHandler:
'@ohif/extension-cornerstone.sopClassHandlerModule.DicomMicroscopySopClassHandler',
measurements: '@ohif/extension-default.panelModule.measurements',
};
const cornerstone = {
measurements: '@ohif/extension-cornerstone.panelModule.measurements',
segmentation: '@ohif/extension-cornerstone.panelModule.panelSegmentation',
};
const tracked = {
@@ -43,7 +48,6 @@ const dicompdf = {
const dicomSeg = {
sopClassHandler: '@ohif/extension-cornerstone-dicom-seg.sopClassHandlerModule.dicom-seg',
viewport: '@ohif/extension-cornerstone-dicom-seg.viewportModule.dicom-seg',
panel: '@ohif/extension-cornerstone-dicom-seg.panelModule.panelSegmentation',
};
const dicomPmap = {
@@ -86,19 +90,7 @@ function modeFactory({ modeConfiguration }) {
measurementService.clearMeasurements();
// customizationService.addModeCustomizations([
// {
// id: 'measurementLabels',
// labelOnMeasure: true,
// exclusive: true,
// items: [
// { value: 'Head', label: 'Head' },
// { value: 'Shoulder', label: 'Shoulder' },
// { value: 'Knee', label: 'Knee' },
// { value: 'Toe', label: 'Toe' },
// ],
// },
// ]);
performCustomizations(customizationService);
// Init Default and SR ToolGroups
initToolGroups(extensionManager, toolGroupService, commandsManager, this.labelConfig);
@@ -116,13 +108,6 @@ function modeFactory({ modeConfiguration }) {
'MoreTools',
]);
customizationService.addModeCustomizations([
{
id: 'segmentation.panel',
disableEditing: true,
},
]);
// // ActivatePanel event trigger for when a segmentation or measurement is added.
// // Do not force activation so as to respect the state the user may have left the UI in.
// _activatePanelTriggersSubscriptions = [
@@ -192,7 +177,7 @@ function modeFactory({ modeConfiguration }) {
id: ohif.layout,
props: {
leftPanels: [tracked.thumbnailList],
rightPanels: [dicomSeg.panel, tracked.measurements],
rightPanels: [cornerstone.segmentation, tracked.measurements],
rightPanelClosed: true,
viewports: [
{
modes/longitudinal/src/initToolGroups.js
+10 -12
View File
@@ -39,7 +39,10 @@ function initDefaultToolGroup(
toolName: toolNames.Zoom,
bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],
},
{ toolName: toolNames.StackScrollMouseWheel, bindings: [] },
{
toolName: toolNames.StackScroll,
bindings: [{ mouseButton: Enums.MouseBindings.Wheel }],
},
],
passive: [
{ toolName: toolNames.Length },
@@ -77,7 +80,6 @@ function initDefaultToolGroup(
{ toolName: toolNames.Angle },
{ toolName: toolNames.CobbAngle },
{ toolName: toolNames.Magnify },
{ toolName: toolNames.SegmentationDisplay },
{ toolName: toolNames.CalibrationLine },
{
toolName: toolNames.PlanarFreehandContourSegmentation,
@@ -150,8 +152,8 @@ function initSRToolGroup(extensionManager, toolGroupService) {
],
},
{
toolName: toolNames.StackScrollMouseWheel,
bindings: [],
toolName: toolNames.StackScroll,
bindings: [{ mouseButton: Enums.MouseBindings.Wheel }],
},
],
passive: [
@@ -163,12 +165,6 @@ function initSRToolGroup(extensionManager, toolGroupService) {
{ toolName: SRToolNames.SRPlanarFreehandROI },
{ toolName: SRToolNames.SRRectangleROI },
{ toolName: toolNames.WindowLevelRegion },
{
toolName: SRToolNames.SRPlanarFreehandContourSegmentation,
configuration: {
displayOnePointAsCrosshairs: true,
},
},
],
enabled: [
{
@@ -206,7 +202,10 @@ function initMPRToolGroup(extensionManager, toolGroupService, commandsManager, m
toolName: toolNames.Zoom,
bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],
},
{ toolName: toolNames.StackScrollMouseWheel, bindings: [] },
{
toolName: toolNames.StackScroll,
bindings: [{ mouseButton: Enums.MouseBindings.Wheel }],
},
],
passive: [
{ toolName: toolNames.Length },
@@ -244,7 +243,6 @@ function initMPRToolGroup(extensionManager, toolGroupService, commandsManager, m
{ toolName: toolNames.Angle },
{ toolName: toolNames.CobbAngle },
{ toolName: toolNames.PlanarFreehandROI },
{ toolName: toolNames.SegmentationDisplay },
{ toolName: toolNames.WindowLevelRegion },
{
toolName: toolNames.PlanarFreehandContourSegmentation,
modes/longitudinal/src/moreTools.ts
+85 -13
View File
@@ -46,7 +46,13 @@ const moreTools = [
label: 'Rotate Right',
tooltip: 'Rotate +90',
commands: 'rotateViewportCW',
evaluate: 'evaluate.action',
evaluate: [
'evaluate.action',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'flipHorizontal',
@@ -54,7 +60,13 @@ const moreTools = [
label: 'Flip Horizontal',
tooltip: 'Flip Horizontally',
commands: 'flipViewportHorizontal',
evaluate: ['evaluate.viewportProperties.toggle', 'evaluate.not3D'],
evaluate: [
'evaluate.viewportProperties.toggle',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video', 'volume3d'],
},
],
}),
createButton({
id: 'ImageSliceSync',
@@ -68,12 +80,18 @@ const moreTools = [
},
},
listeners: {
[EVENTS.STACK_VIEWPORT_NEW_STACK]: {
[EVENTS.VIEWPORT_NEW_IMAGE_SET]: {
commandName: 'toggleImageSliceSync',
commandOptions: { toggledState: true },
},
},
evaluate: ['evaluate.cornerstone.synchronizer', 'evaluate.not3D'],
evaluate: [
'evaluate.cornerstone.synchronizer',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video', 'volume3d'],
},
],
}),
createButton({
id: 'ReferenceLines',
@@ -85,7 +103,13 @@ const moreTools = [
[ViewportGridService.EVENTS.ACTIVE_VIEWPORT_ID_CHANGED]: ReferenceLinesListeners,
[ViewportGridService.EVENTS.VIEWPORTS_READY]: ReferenceLinesListeners,
},
evaluate: 'evaluate.cornerstoneTool.toggle',
evaluate: [
'evaluate.cornerstoneTool.toggle',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'ImageOverlayViewer',
@@ -93,7 +117,13 @@ const moreTools = [
label: 'Image Overlay',
tooltip: 'Toggle Image Overlay',
commands: 'toggleEnabledDisabledToolbar',
evaluate: 'evaluate.cornerstoneTool.toggle',
evaluate: [
'evaluate.cornerstoneTool.toggle',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'StackScroll',
@@ -109,7 +139,13 @@ const moreTools = [
label: 'Invert',
tooltip: 'Invert Colors',
commands: 'invertViewport',
evaluate: 'evaluate.viewportProperties.toggle',
evaluate: [
'evaluate.viewportProperties.toggle',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'Probe',
@@ -125,7 +161,13 @@ const moreTools = [
label: 'Cine',
tooltip: 'Cine',
commands: 'toggleCine',
evaluate: ['evaluate.cine', 'evaluate.not3D'],
evaluate: [
'evaluate.cine',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['volume3d'],
},
],
}),
createButton({
id: 'Angle',
@@ -149,7 +191,13 @@ const moreTools = [
label: 'Zoom-in',
tooltip: 'Zoom-in',
commands: setToolActiveToolbar,
evaluate: 'evaluate.cornerstoneTool',
evaluate: [
'evaluate.cornerstoneTool',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'CalibrationLine',
@@ -157,7 +205,13 @@ const moreTools = [
label: 'Calibration',
tooltip: 'Calibration Line',
commands: setToolActiveToolbar,
evaluate: 'evaluate.cornerstoneTool',
evaluate: [
'evaluate.cornerstoneTool',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'TagBrowser',
@@ -172,7 +226,13 @@ const moreTools = [
label: 'Magnify Probe',
tooltip: 'Magnify Probe',
commands: 'toggleActiveDisabledToolbar',
evaluate: 'evaluate.cornerstoneTool.toggle.ifStrictlyDisabled',
evaluate: [
'evaluate.cornerstoneTool.toggle.ifStrictlyDisabled',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
createButton({
id: 'UltrasoundDirectionalTool',
@@ -180,7 +240,13 @@ const moreTools = [
label: 'Ultrasound Directional',
tooltip: 'Ultrasound Directional',
commands: setToolActiveToolbar,
evaluate: ['evaluate.cornerstoneTool', 'evaluate.isUS'],
evaluate: [
'evaluate.cornerstoneTool',
{
name: 'evaluate.modality.supported',
supportedModalities: ['US'],
},
],
}),
createButton({
id: 'WindowLevelRegion',
@@ -188,7 +254,13 @@ const moreTools = [
label: 'Window Level Region',
tooltip: 'Window Level Region',
commands: setToolActiveToolbar,
evaluate: 'evaluate.cornerstoneTool',
evaluate: [
'evaluate.cornerstoneTool',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
}),
],
},
modes/longitudinal/src/toolbarButtons.ts
+14 -2
View File
@@ -126,7 +126,13 @@ const toolbarButtons: Button[] = [
icon: 'tool-window-level',
label: 'Window Level',
commands: setToolActiveToolbar,
evaluate: 'evaluate.cornerstoneTool',
evaluate: [
'evaluate.cornerstoneTool',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['wholeSlide'],
},
],
},
},
// Pan...
@@ -162,7 +168,13 @@ const toolbarButtons: Button[] = [
icon: 'tool-capture',
label: 'Capture',
commands: 'showDownloadViewportModal',
evaluate: 'evaluate.action',
evaluate: [
'evaluate.action',
{
name: 'evaluate.viewport.supported',
unsupportedViewportTypes: ['video'],
},
],
},
},
{