Support of RTSTRUCT visualization (#1524)

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* WIP consume RTSTRUCT

* Doc API and add endpoints.

* Rebase on SEG PR.

* Update DICOM Keyword variables.

* Fix metadata vars format

* Add basic RT panel along with configuration

* Wire up configuration with settings component

* Mock structure set tables

* Improve design of settings

* Integrate list of contours

* Extract panel section

* Filter by seriesuid

* Fix slow settings

* Add jump to image

* Fix expandable items

* Improvements and CR update

* CR Update: Remove google config

* CR Update: Remove erase tool test

* CR Update: Remove instance

* CR Update: Fix issue with undefined prop

* CR Update: Update yarn lock

* Hide actions of structure item

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
This commit is contained in:
authored and GitHub committed 2020-04-09 12:21:43 +02:00
1 parent 83f9478977
commit 858484f250
39 files changed
+4770 -2770

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+2 -2
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@@ -1,7 +1,7 @@
# Change Log
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
All notable changes to this project will be documented in this file. See
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [2.6.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.6.7...@ohif/core@2.6.8) (2020-04-06)
@@ -144,7 +144,7 @@ async function makeSOPInstance(server, study, instance) {
wadorsuri,
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
thumbnailRendering: server.thumbnailRendering
};
series.instances.push(sopInstance);
+2 -2
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@@ -1,7 +1,7 @@
# Change Log
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
All notable changes to this project will be documented in this file. See
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.4.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.4.1...@ohif/ui@1.4.2) (2020-04-06)
@@ -9,14 +9,21 @@ export class TableList extends Component {
defaultItems: PropTypes.object,
children: PropTypes.node.isRequired,
headerTitle: PropTypes.string,
headless: PropTypes.bool,
};
static defaultProps = {
headless: false,
};
render() {
return (
<div className="tableList">
<div className="tableListHeader" onClick={this.onHeaderClick}>
{this.getHeader()}
</div>
{!this.props.headless && (
<div className="tableListHeader" onClick={this.onHeaderClick}>
{this.getHeader()}
</div>
)}
<div className="tableListContent">{this.props.children}</div>
</div>
);
+4
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@@ -85,8 +85,12 @@ import trash from './icons/trash.svg';
import unlink from './icons/unlink.svg';
import user from './icons/user.svg';
import youtube from './icons/youtube.svg';
import eye from './icons/eye.svg';
import eyeClosed from './icons/eye-closed.svg';
const ICONS = {
eye,
'eye-closed': eyeClosed,
brush,
scissors,
user,
@@ -0,0 +1 @@
<svg aria-hidden="true" focusable="false" data-prefix="fas" data-icon="eye-slash" class="svg-inline--fa fa-eye-slash fa-w-20" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 640 512"><path fill="currentColor" d="M320 400c-75.85 0-137.25-58.71-142.9-133.11L72.2 185.82c-13.79 17.3-26.48 35.59-36.72 55.59a32.35 32.35 0 0 0 0 29.19C89.71 376.41 197.07 448 320 448c26.91 0 52.87-4 77.89-10.46L346 397.39a144.13 144.13 0 0 1-26 2.61zm313.82 58.1l-110.55-85.44a331.25 331.25 0 0 0 81.25-102.07 32.35 32.35 0 0 0 0-29.19C550.29 135.59 442.93 64 320 64a308.15 308.15 0 0 0-147.32 37.7L45.46 3.37A16 16 0 0 0 23 6.18L3.37 31.45A16 16 0 0 0 6.18 53.9l588.36 454.73a16 16 0 0 0 22.46-2.81l19.64-25.27a16 16 0 0 0-2.82-22.45zm-183.72-142l-39.3-30.38A94.75 94.75 0 0 0 416 256a94.76 94.76 0 0 0-121.31-92.21A47.65 47.65 0 0 1 304 192a46.64 46.64 0 0 1-1.54 10l-73.61-56.89A142.31 142.31 0 0 1 320 112a143.92 143.92 0 0 1 144 144c0 21.63-5.29 41.79-13.9 60.11z"></path></svg>

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<svg aria-hidden="true" focusable="false" data-prefix="fas" data-icon="eye" class="svg-inline--fa fa-eye fa-w-18" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 576 512"><path fill="currentColor" d="M572.52 241.4C518.29 135.59 410.93 64 288 64S57.68 135.64 3.48 241.41a32.35 32.35 0 0 0 0 29.19C57.71 376.41 165.07 448 288 448s230.32-71.64 284.52-177.41a32.35 32.35 0 0 0 0-29.19zM288 400a144 144 0 1 1 144-144 143.93 143.93 0 0 1-144 144zm0-240a95.31 95.31 0 0 0-25.31 3.79 47.85 47.85 0 0 1-66.9 66.9A95.78 95.78 0 1 0 288 160z"></path></svg>

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+2 -2
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@@ -1,7 +1,7 @@
# Change Log
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
All notable changes to this project will be documented in this file. See
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [3.8.18](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.8.17...@ohif/viewer@3.8.18) (2020-04-07)
+1
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@@ -57,6 +57,7 @@
"@ohif/extension-lesion-tracker": "^0.2.0",
"@ohif/extension-vtk": "^1.3.9",
"@ohif/i18n": "^0.52.8",
"@ohif/extension-dicom-rt": "^0.0.1",
"@ohif/ui": "^1.4.2",
"@tanem/react-nprogress": "^1.1.25",
"classnames": "^2.2.6",
+2
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@@ -26,6 +26,7 @@ import ReactDOM from 'react-dom';
import OHIFVTKExtension from '@ohif/extension-vtk';
import OHIFDicomHtmlExtension from '@ohif/extension-dicom-html';
import OHIFDicomSegmentationExtension from '@ohif/extension-dicom-segmentation';
import OHIFDicomRtExtension from '@ohif/extension-dicom-rt';
import OHIFDicomMicroscopyExtension from '@ohif/extension-dicom-microscopy';
import OHIFDicomPDFExtension from '@ohif/extension-dicom-pdf';
@@ -46,6 +47,7 @@ const appProps = {
OHIFDicomMicroscopyExtension,
OHIFDicomPDFExtension,
OHIFDicomSegmentationExtension,
OHIFDicomRtExtension,
],
};