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fix(seg): multiframe SEG (#4890)

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Igor Octaviano authored and GitHub committed 2025-03-27 15:52:22 -04:00
1 parent 2acc878f26
commit 892d03fc3c
12 files changed
+210 -205
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extensions/cornerstone-dicom-pmap/package.json
+2 -2
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@@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}
extensions/cornerstone-dicom-seg/package.json
+2 -2
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@@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}
extensions/cornerstone-dicom-seg/src/getSopClassHandlerModule.ts
+7 -2
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@@ -177,8 +177,13 @@ async function _loadSegments({
throw new Error('referencedDisplaySet is missing for SEG');
}
const { instances: images } = referencedDisplaySet;
const imageIds = images.map(({ imageId }) => imageId);
let { imageIds } = referencedDisplaySet;
if (!imageIds) {
// try images
const { images } = referencedDisplaySet;
imageIds = images.map(image => image.imageId);
}
// Todo: what should be defaults here
const tolerance = 0.001;
extensions/cornerstone-dicom-sr/package.json
+3 -3
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@@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"classnames": "^2.3.2"
}
}
extensions/cornerstone-dynamic-volume/package.json
+2 -2
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@@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"classnames": "^2.3.2"
}
}
extensions/cornerstone/package.json
+6 -6
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@@ -38,7 +38,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.7.8",
"@cornerstonejs/dicom-image-loader": "^3.7.16",
"@ohif/core": "3.10.0-beta.138",
"@ohif/ui": "3.10.0-beta.138",
"dcmjs": "*",
@@ -51,11 +51,11 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/labelmap-interpolation": "^3.7.8",
"@cornerstonejs/polymorphic-segmentation": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/labelmap-interpolation": "^3.7.16",
"@cornerstonejs/polymorphic-segmentation": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
"@kitware/vtk.js": "32.12.0",
"html2canvas": "^1.4.1",
extensions/cornerstone/src/services/SegmentationService/SegmentationService.ts
+1 -1
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@@ -564,7 +564,7 @@ class SegmentationService extends PubSubService {
const referencedImageIdsWithGeometry = Array.from(structureSet.ReferencedSOPInstanceUIDsSet);
const referencedImageIds = referencedDisplaySet.instances.map(image => image.imageId);
const referencedImageIds = referencedDisplaySet.imageIds;
// find the first image id that contains a referenced SOP instance UID
const firstSegmentedSliceImageId = referencedImageIds.find(imageId =>
referencedImageIdsWithGeometry.some(referencedId => imageId.includes(referencedId))
extensions/measurement-tracking/package.json
+2 -2
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@@ -32,8 +32,8 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"@ohif/core": "3.10.0-beta.138",
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.138",
"@ohif/extension-default": "3.10.0-beta.138",