Work on refactoring measurements out of Lesion Tracker package

- Removed AssociatedStudies Collection
- Measurement API is generated from configuration files
- Data exchange methods are defined in configuration

PETSUVMeasurements/server/dropAllCollections.js

@@ -0,0 +1,12 @@
+// Temporary fix to drop all Collections on server restart
+// http://stackoverflow.com/questions/23891631/meteor-how-can-i-drop-all-mongo-collections-and-clear-all-data-on-startup
+Meteor.startup(function() {
+    console.warn('Dropping all Collections!');
+    for (var property in global) {
+        var object = global[property];
+        if (object instanceof Meteor.Collection) {
+        	console.warn('Dropping: ' + object._debugName);
+            object.remove({});
+        }
+    }
+});

PETSUVMeasurements/server/email.js

@@ -0,0 +1,50 @@
+Meteor.startup(function () {
+
+    // Mail server settings
+    var username = Meteor.settings && Meteor.settings.mailServerSettings && Meteor.settings.mailServerSettings.username || null;
+    var password = Meteor.settings && Meteor.settings.mailServerSettings && Meteor.settings.mailServerSettings.password || null;
+    var server = Meteor.settings && Meteor.settings.mailServerSettings && Meteor.settings.mailServerSettings.server || null;
+    var port = Meteor.settings && Meteor.settings.mailServerSettings && Meteor.settings.mailServerSettings.port || null;
+    var verifyEmail = Meteor.settings && Meteor.settings.public && Meteor.settings.public.verifyEmail || false;
+    var siteName = Meteor.settings && Meteor.settings.public && Meteor.settings.public.siteName || "Lesion Tracker";
+
+    if (username && password && server && port) {
+        Accounts.emailTemplates.siteName = siteName;
+        Accounts.emailTemplates.from = siteName+' Admin <'+username+'>';
+
+        process.env.MAIL_URL = 'smtp://' +
+            encodeURIComponent(username) + ':' +
+            encodeURIComponent(password) + '@' +
+            encodeURIComponent(server) + ':' + port;
+
+        // Subject line of the email.
+        Accounts.emailTemplates.verifyEmail.subject = function(user) {
+            return 'Confirm Your Email Address for '+siteName;
+        };
+
+        // Email text
+        Accounts.emailTemplates.verifyEmail.text = function(user, url) {
+            return 'Thank you for registering.  Please click on the following link to verify your email address: \r\n' + url;
+        };
+
+        // Reset password mail
+        Accounts.emailTemplates.resetPassword.subject = function() {
+          return 'Reset your '+siteName+' password'
+        };
+
+        Accounts.urls.resetPassword = function(token) {
+            return Meteor.absoluteUrl('resetPassword/' + token);
+        };
+
+        Accounts.emailTemplates.resetPassword.text = function(user, url) {
+            return "Hello " + user.profile.fullName + ",\n\n" +
+                "Click the following link to set your new password:\n" +
+                url + "\n\n";
+        };
+
+        // Send email when account is created
+        Accounts.config({
+            sendVerificationEmail: verifyEmail
+        });
+    }
+});