Merged LesionTracker and OHIF Viewer, refactored out common components

LesionTracker/.meteor/.finished-upgraders

@@ -0,0 +1,12 @@
+# This file contains information which helps Meteor properly upgrade your
+# app when you run 'meteor update'. You should check it into version control
+# with your project.
+
+notices-for-0.9.0
+notices-for-0.9.1
+0.9.4-platform-file
+notices-for-facebook-graph-api-2
+1.2.0-standard-minifiers-package
+1.2.0-meteor-platform-split
+1.2.0-cordova-changes
+1.2.0-breaking-changes

LesionTracker/.meteor/.gitignore

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+local

LesionTracker/.meteor/.id

@@ -0,0 +1,7 @@
+# This file contains a token that is unique to your project.
+# Check it into your repository along with the rest of this directory.
+# It can be used for purposes such as:
+#   - ensuring you don't accidentally deploy one app on top of another
+#   - providing package authors with aggregated statistics
+
+1q3vtk41m2yk4k1rqj08l

LesionTracker/.meteor/packages

@@ -0,0 +1,34 @@
+# Meteor packages used by this project, one per line.
+# Check this file (and the other files in this directory) into your repository.
+#
+# 'meteor add' and 'meteor remove' will edit this file for you,
+# but you can also edit it by hand.
+
+meteor-base             # Packages every Meteor app needs to have
+mobile-experience       # Packages for a great mobile UX
+mongo                   # The database Meteor supports right now
+blaze-html-templates    # Compile .html files into Meteor Blaze views
+session                 # Client-side reactive dictionary for your app
+jquery                  # Helpful client-side library
+tracker                 # Meteor's client-side reactive programming library
+
+standard-minifiers      # JS/CSS minifiers run for production mode
+es5-shim                # ECMAScript 5 compatibility for older browsers.
+ecmascript              # Enable ECMAScript2015+ syntax in app code
+
+autopublish             # Publish all data to the clients (for prototyping)
+insecure                # Allow all DB writes from clients (for prototyping)
+cornerstone
+worklist
+viewerbase
+dicomweb
+accounts-password
+
+ian:accounts-ui-bootstrap-3
+iron:router
+twbs:bootstrap
+http
+arsnebula:reactive-promise
+promise
+stylus
+fortawesome:fontawesome

LesionTracker/.meteor/platforms

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+server
+browser

LesionTracker/.meteor/release

@@ -0,0 +1 @@
+METEOR@1.2.0.2

LesionTracker/.meteor/versions

@@ -0,0 +1,96 @@
+accounts-base@1.2.1
+accounts-password@1.1.3
+anti:i18n@0.4.3
+arsnebula:reactive-promise@0.9.1
+autopublish@1.0.4
+autoupdate@1.2.3
+babel-compiler@5.8.24_1
+babel-runtime@0.1.4
+base64@1.0.4
+binary-heap@1.0.4
+blaze@2.1.3
+blaze-html-templates@1.0.1
+blaze-tools@1.0.4
+boilerplate-generator@1.0.4
+caching-compiler@1.0.0
+caching-html-compiler@1.0.2
+callback-hook@1.0.4
+check@1.0.6
+cornerstone@0.0.1
+ddp@1.2.2
+ddp-client@1.2.1
+ddp-common@1.2.1
+ddp-rate-limiter@1.0.0
+ddp-server@1.2.1
+deps@1.0.9
+dicomweb@0.0.1
+diff-sequence@1.0.1
+ecmascript@0.1.5
+ecmascript-collections@0.1.6
+ejson@1.0.7
+email@1.0.7
+es5-shim@4.1.13
+fastclick@1.0.7
+fortawesome:fontawesome@4.4.0
+geojson-utils@1.0.4
+hot-code-push@1.0.0
+html-tools@1.0.5
+htmljs@1.0.5
+http@1.1.1
+ian:accounts-ui-bootstrap-3@1.2.82
+id-map@1.0.4
+insecure@1.0.4
+iron:controller@1.0.12
+iron:core@1.0.11
+iron:dynamic-template@1.0.12
+iron:layout@1.0.12
+iron:location@1.0.11
+iron:middleware-stack@1.0.11
+iron:router@1.0.12
+iron:url@1.0.11
+jquery@1.11.4
+launch-screen@1.0.4
+livedata@1.0.15
+localstorage@1.0.5
+logging@1.0.8
+meteor@1.1.9
+meteor-base@1.0.1
+meteor-platform@1.2.3
+minifiers@1.1.7
+minimongo@1.0.10
+mobile-experience@1.0.1
+mobile-status-bar@1.0.6
+mongo@1.1.2
+mongo-id@1.0.1
+npm-bcrypt@0.7.8_2
+npm-mongo@1.4.39_1
+observe-sequence@1.0.7
+ordered-dict@1.0.4
+promise@0.5.0
+random@1.0.4
+rate-limit@1.0.0
+reactive-dict@1.1.2
+reactive-var@1.0.6
+reload@1.1.4
+retry@1.0.4
+routepolicy@1.0.6
+service-configuration@1.0.5
+session@1.1.1
+sha@1.0.4
+spacebars@1.0.7
+spacebars-compiler@1.0.7
+srp@1.0.4
+standard-app-packages@1.0.6
+standard-minifiers@1.0.1
+stylus@2.511.0_2
+templating@1.1.4
+templating-tools@1.0.0
+tracker@1.0.9
+twbs:bootstrap@3.3.5
+ui@1.0.8
+underscore@1.0.4
+url@1.0.5
+viewerbase@0.0.1
+webapp@1.2.2
+webapp-hashing@1.0.5
+worklist@0.0.1

LesionTracker/bin/localhostOrthanc.sh

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+echo "Starting Meteor server..."
+PACKAGE_DIRS="../Packages" meteor --settings ../config/localhostOrthanc.json

LesionTracker/bin/medicalConnections.sh

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+PACKAGE_DIRS="../Packages" meteor --settings ../config/medicalConnections.json

LesionTracker/bin/medkenOrthanc.sh

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+PACKAGE_DIRS="../Packages" meteor --settings ../config/medkenOrthanc.json

LesionTracker/bin/siimDCM4CHEE.sh

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+PACKAGE_DIRS="../Packages" meteor --settings ../config/siimDCM4CHEE.json

LesionTracker/client/compatibility/docking-container.js

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+//Collapse the container
+function collapseContainer ( container ) {
+    container.toggleClass("collapseHorizontal");
+}
+
+//function add collapse button
+function addButtonCollapse ( container ) {
+    var btnCollapse = document.createElement("button");
+    btnCollapse.innerHTML = ">";
+    btnCollapse.classList.add('btnCollapse');
+
+    btnCollapse.onclick = function() { // Note this is a function
+        collapseContainer(container);
+    };
+    container.append(btnCollapse);
+}
+
+$.fn.dockingContainer = function(options) {
+    var self = this;
+    var opts = $.extend( {}, $.fn.dockingContainer.defaults, options);
+
+    //Set container class
+    this.addClass("dockingContainer");
+
+    //Add btnCollapse
+    addButtonCollapse(this);
+    return this;
+};
+
+//Defaults
+$.fn.dockingContainer.defaults = {
+    background: "black"
+};

LesionTracker/client/compatibility/lesionTool.js

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+var lineIndex = 0; //This holds drawn line index
+var cornerstoneTools = (function ($, cornerstone, cornerstoneMath, cornerstoneTools) {
+
+    "use strict";
+
+    if(cornerstoneTools === undefined) {
+        cornerstoneTools = {};
+    }
+
+    var toolType = "lesion";
+
+    ///////// BEGIN ACTIVE TOOL ///////
+    function createNewMeasurement(mouseEventData)
+    {
+        var element = mouseEventData.element;
+        var lesionCounter = "";
+
+        //setting name of lesion
+        $(element).on("LesionNameSet", function(e,counter){
+            lesionCounter = counter;
+        });
+
+        //Listens LesionToolModified event and calls measurementModified function when lesion measurement is changed or updated.
+        $(element).on("LesionToolModified", measurementModified);
+        $(element).trigger("LesionMeasurementCreated");
+
+        // create the measurement data for this tool with the end handle activated
+        var measurementData = {
+            visible : true,
+            active : true,
+            handles : {
+                start : {
+                    x : mouseEventData.currentPoints.image.x,
+                    y : mouseEventData.currentPoints.image.y,
+                    highlight: true,
+                    active: false
+                },
+                end: {
+                    x : mouseEventData.currentPoints.image.x,
+                    y : mouseEventData.currentPoints.image.y,
+                    highlight: true,
+                    active: true
+                }
+            },
+            index: lineIndex,
+            measurementText: "",
+            linkedTextCoords: {
+                start : {
+                    x : mouseEventData.currentPoints.image.x,
+                    y : mouseEventData.currentPoints.image.y,
+                    highlight: true,
+                    active: false
+                },
+                end: {
+                    x : mouseEventData.currentPoints.image.x,
+                    y : mouseEventData.currentPoints.image.y,
+                    highlight: true,
+                    active: true
+                },
+                init: false
+            },
+            lesionName: "Target "+lesionCounter,
+            isDeleted: false,
+            lineNumber:"" //Indicates line number on image
+        };
+        lineIndex++;
+        return measurementData;
+    }
+    ///////// END ACTIVE TOOL ///////
+
+    function pointNearTool(element, data, coords)
+    {
+        var lineSegment = {
+            start: cornerstone.pixelToCanvas(element, data.handles.start), end: cornerstone.pixelToCanvas(element, data.handles.end)
+        };
+        var distanceToPoint = cornerstoneMath.lineSegment.distanceToPoint(lineSegment, coords);
+        return (distanceToPoint < 25);
+    }
+
+    function pointNearToolForText(element, data, coords) {
+        var lineSegment = {
+            start: cornerstone.pixelToCanvas(element, data.linkedTextCoords.start), end: cornerstone.pixelToCanvas(element, data.linkedTextCoords.end)
+        };
+
+        var distanceToPoint = cornerstoneMath.lineSegment.distanceToPoint(lineSegment, coords);
+        return (distanceToPoint < 30);
+
+    }
+
+
+    ///////// BEGIN IMAGE RENDERING ///////
+    function onImageRendered(e, eventData) {
+
+        // if we have no toolData for this element, return immediately as there is nothing to do
+        var toolData = cornerstoneTools.getToolState(e.currentTarget, toolType);
+        if (toolData === undefined) {
+            return;
+        }
+
+        // we have tool data for this element - iterate over each one and draw it
+        var context = eventData.canvasContext.canvas.getContext('2d');
+        context.setTransform(1, 0, 0, 1, 0, 0);
+
+        var color;
+        var lineWidth = cornerstoneTools.toolStyle.getToolWidth();
+        var font = cornerstoneTools.textStyle.getFont();
+        var config = cornerstoneTools.length.getConfiguration();
+
+        for (var i = 0; i < toolData.data.length; i++) {
+            context.save();
+            // configurable shadow
+            if (config && config.shadow) {
+                context.shadowColor = '#000000';
+                context.shadowOffsetX = +1;
+                context.shadowOffsetY = +1;
+            }
+
+            var data = toolData.data[i];
+            if (data.active) {
+                color = cornerstoneTools.toolColors.getActiveColor();
+            } else {
+                color = cornerstoneTools.toolColors.getToolColor();
+            }
+
+            // draw the line
+            var handleStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.handles.start);
+            var handleEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.handles.end);
+
+            context.beginPath();
+            context.strokeStyle = color;
+            context.lineWidth = lineWidth;
+            context.moveTo(handleStartCanvas.x, handleStartCanvas.y);
+            context.lineTo(handleEndCanvas.x, handleEndCanvas.y);
+            context.stroke();
+
+            // draw the handles
+            cornerstoneTools.drawHandles(context, eventData, data.handles, color);
+
+            //Set coordinates of text
+            var linkedTextStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.start);
+            var linkedTextEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.end);
+            if(!data.linkedTextCoords.init){
+                data.linkedTextCoords.start.x = data.handles.start.x + 50;
+                data.linkedTextCoords.start.y = data.handles.start.y + 40;
+                linkedTextStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.start);
+
+                //Set end point of linkedTextCoords
+                data.linkedTextCoords.end.x = data.linkedTextCoords.start.x + 50;
+                data.linkedTextCoords.end.y = data.linkedTextCoords.start.y + 30;
+                linkedTextEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.end);
+
+                //initialized coordinates of text
+                data.linkedTextCoords.init = true;
+            }
+
+            //Draw linked line as dashed
+            context.setLineDash([2,3]);
+            context.beginPath();
+            context.strokeStyle = color;
+            context.lineWidth = 1 / eventData.viewport.scale;
+            var mid = {
+                x:(handleStartCanvas.x + handleEndCanvas.x) / 2, y:(handleStartCanvas.y + handleEndCanvas.y) / 2
+            };
+
+            context.moveTo(mid.x, mid.y);
+            context.lineTo(linkedTextStartCanvas.x + 20, linkedTextStartCanvas.y + 20);
+            context.stroke();
+
+            // Draw the text
+            context.fillStyle = color;
+            context.font = font;
+            var dx = (data.handles.start.x - data.handles.end.x) * (eventData.image.columnPixelSpacing || 1);
+            var dy = (data.handles.start.y - data.handles.end.y) * (eventData.image.rowPixelSpacing || 1);
+            var length = Math.sqrt(dx * dx + dy * dy);
+
+            var suffix = ' mm';
+            if (!eventData.image.rowPixelSpacing || !eventData.image.columnPixelSpacing) {
+                suffix = ' pixels';
+            }
+
+            var text = '' + length.toFixed(2) + suffix;
+            var textCoords = {
+                x:  linkedTextStartCanvas.x, y: linkedTextStartCanvas.y
+            };
+
+            cornerstoneTools.drawTextBox(context, data.lesionName, textCoords.x, textCoords.y, color);
+            cornerstoneTools.drawTextBox(context, text, textCoords.x, textCoords.y + 20, color);
+
+            //Set measurement text to show lesion table
+            data.measurementText = length.toFixed(2);
+            $(eventData.enabledElement.element).trigger("LesionTextChanged",data);
+
+            context.restore();
+        }
+
+    }
+    ///////// END IMAGE RENDERING ///////
+
+    //This function is called from cornerstone-viewport.html and updates lesion measurement and makes the lesion active
+    function measurementModified(e, eventObject){
+        var start = new Date();
+
+        var enabledElement = eventObject.enabledElement;
+        var lineIndex = eventObject.lineIndex;
+        var type = eventObject.type;
+
+        // if we have no toolData for this element, return immediately as there is nothing to do
+        var toolData = cornerstoneTools.getToolState(e.currentTarget, toolType);
+        if (toolData === undefined) {
+            return;
+        }
+
+        //If type is delete, remove measurement
+        if(type === "delete") {
+            var deletedDataIndex = -1;
+
+            for (var i = 0; i < toolData.data.length; i++) {
+                var data = toolData.data[i];
+
+                //When click a row of table measurements, measurement will be active and color will be green
+                if (data.index === eventObject.lineIndex && eventObject.type !== "active") {
+                    data.visible = false;
+                    deletedDataIndex = i;
+                }
+            }
+
+            if (deletedDataIndex >= 0 && deletedDataIndex < toolData.data.length) {
+                toolData.data.splice(deletedDataIndex, 1);
+            }
+        } else {
+            for (var i = 0; i < toolData.data.length; i++) {
+                var data = toolData.data[i];
+
+                //When click a row of table measurements, measurement will be active and color will be green
+                if (data.index === eventObject.lineIndex && eventObject.type === "active") {
+                    data.active = true;
+                } else{
+                    data.active = false;
+                }
+            }
+        }
+
+
+        enabledElement.image.render(enabledElement, true);
+
+        var context = enabledElement.canvas.getContext('2d');
+
+        var end = new Date();
+        var diff = end - start;
+        //console.log(diff + ' ms');
+
+        var eventData = {
+            viewport : enabledElement.viewport,
+            element : enabledElement.element,
+            image : enabledElement.image,
+            enabledElement : enabledElement,
+            canvasContext: context,
+            measurementText: "",
+            renderTimeInMs : diff,
+            lineIndex : lineIndex,
+            type : type //Holds image will be deleted or active
+        };
+
+        enabledElement.invalid = false;
+
+        onImageRendered(e, eventData);
+    }
+
+    // module exports
+    cornerstoneTools.lesion = cornerstoneTools.mouseButtonTool({
+        createNewMeasurement : createNewMeasurement,
+        onImageRendered: onImageRendered,
+        pointNearTool : pointNearTool,
+        pointNearToolForText: pointNearToolForText,
+        toolType : toolType
+    });
+    cornerstoneTools.lesionTouch = cornerstoneTools.touchTool({
+        createNewMeasurement: createNewMeasurement,
+        onImageRendered: onImageRendered,
+        pointNearTool: pointNearTool,
+        pointNearToolForText: pointNearToolForText,
+        toolType: toolType
+    });
+    return cornerstoneTools;
+}($, cornerstone, cornerstoneMath, cornerstoneTools));

LesionTracker/client/compatibility/tabHelper.js

@@ -0,0 +1,15 @@
+//Holds functions to help managing tabs
+
+//Returns activeTabId
+function activeTabId() {
+    var activeTab = Session.get("activeTabId");
+    return activeTab;
+}
+
+//Returns activeTabContentId
+function activeTabContentId () {
+    var activeTabId = activeTabId();
+    var splitTabId = activeTabId.split("tab");
+    var contentId = "content"+splitTabId[1];
+    return contentId;
+}

LesionTracker/client/components/hidingPanel/hidingPanel.html

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+<template name="hidingPanel">
+    <div class="hidingPanel">
+        {{> studyBrowser}}
+    </div>
+</template>

LesionTracker/client/components/hidingPanel/hidingPanel.styl

@@ -0,0 +1,9 @@
+.hidingPanel
+  width: 12%
+  height: 100%
+  margin-top: 35px
+  position: relative
+  float: left
+  overflow: auto
+  background-color: blue
+  color: black

LesionTracker/client/components/toolbar/toolbar.css

@@ -0,0 +1,48 @@
+.toolbar {
+    width: 100%;
+    height: 35px;
+    text-align: center;
+}
+
+#toolbar-group button {
+    text-align: center;
+    margin-top: 2px;
+    margin-right: 3px;
+    margin-left: 3px;
+    color: #ffffff;
+    background-color: black;
+    width: 30px;
+    height: 30px;
+    border: 1px solid white;
+}
+
+#toolbar-group button > span {
+    width: 12px;
+    height: 12px;
+    position: absolute;
+    top: 9px;
+    left: 9px;
+    right: 9px;
+    bottom: 9px;
+}
+
+
+#toolbar-group .btn:hover {
+    border-width: 3px;
+    background-color: transparent;
+    color: white;
+}
+#toolbar-group .btn:focus, .btn:active {
+    outline: 0 !important;
+    border-width: 5px;
+    background-color: transparent;
+    color:white;
+    text-align: center;
+}
+
+#toolbar-group .btn:focus > span{
+    top: 6px;
+    left: 6px;
+    right: 6px;
+    bottom: 6px;
+}

LesionTracker/client/components/toolbar/toolbar.html

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+<template name="toolbar">
+    <div id="toolbar" class="toolbar">
+        <div id="toolbar-group" class="btn-group">
+            <!-- WW/WL -->
+            <button id="wwwc" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="WW/WC"><span class="fa fa-sun-o"></span></button>
+            <!-- Invert -->
+            <button id="invert" type="button" class="imageViewerCommand btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Invert"><span class="fa fa-adjust"></span></button>
+            <!-- Zoom -->
+            <button id="zoom" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Zoom"><span class="fa fa-search"></span></button>
+            <!-- Pan -->
+            <button id="pan" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Pan"><span class="fa fa-arrows"></span></button>
+            <!-- Stack scroll -->
+            <button id="stackScroll" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Stack Scroll"><span class="fa fa-bars"></span></button>
+            <!-- Play clip -->
+            <button id="playClip" type="button" class="imageViewerCommand btn btn-sm btn-default" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Play/Stop Clip">
+                {{ #if isPlaying }}
+                    <span class="fa fa-stop"></span>
+                {{ else }}
+                    <span class="fa fa-play"></span>
+                {{ /if }}
+            </button>
+            <!-- Angle measurement -->
+            <!--<button id="angle" type="button" class="imageViewerTool btn btn-sm btn-default" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Angle Measurement"><span class="fa fa-angle-left"></span></button>-->
+            <!-- Pixel probe -->
+            <button id="dragProbe" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Pixel Probe"><span class="fa fa-dot-circle-o"></span></button>
+            <!-- Length measurement -->
+            <button id="length" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Length Measurement"><span class="fa fa-arrows-v"></span></button>
+            <!-- Elliptical ROI -->
+            <button id="ellipticalRoi" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Elliptical ROI"><span class="fa fa-circle-o"></span></button>
+            <!-- Rectangle ROI -->
+            <button id="rectangleRoi" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Rectangle ROI"><span class="fa fa-square-o"></span></button>
+            <!-- Lesion Tool -->
+            <button id="lesion" type="button" class="imageViewerTool btn btn-sm btn-toolbar" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Lesion Tool"><span class="fa fa-arrows-v"></span></button>
+        </div>
+    </div>
+</template>

LesionTracker/client/components/toolbar/toolbar.js

@@ -0,0 +1,34 @@
+Template.toolbar.events({
+    'click .imageViewerTool': function(e) {
+        var tool = e.currentTarget.id;
+        console.log('Setting active tool to: ' + tool);
+        toolManager.setActiveTool(tool);
+    },
+    'click .imageViewerCommand': function(e) {
+        var command = e.currentTarget.id;
+        if (!OHIF.viewer.functionList.hasOwnProperty(command)) {
+            return;
+        }
+
+        // TODO = Add support for active viewports
+        //var element = getActiveViewportElement();
+        $('.imageViewer').each(function() {
+            var element = this;
+            OHIF.viewer.functionList[command](element);
+        });
+    }
+});
+
+Template.toolbar.onRendered(function() {
+    var tooltipButtons = $('[data-toggle="tooltip"]');
+    tooltipButtons.tooltip(OHIF.viewer.tooltipConfig);
+
+    // Enable tooltips for the layout button
+    var extraTooltipButtons = $('[rel="tooltip"]');
+    extraTooltipButtons.tooltip(OHIF.viewer.tooltipConfig);
+
+    toolManager.addTool('lesion', {
+        mouse: cornerstoneTools.lesion,
+        touch: cornerstoneTools.lesionTouch
+    });
+});

LesionTracker/client/components/viewer.css

@@ -0,0 +1,7 @@
+.viewer{
+    width: 100%;
+    height: 100%;
+    margin: 0;
+    padding: 0;
+    background-color: black;
+}

LesionTracker/client/components/viewer.html

@@ -0,0 +1,9 @@
+<template name="viewer">
+    <head>
+        <meta name="viewport" content="width=device-width,initial-scale=1.0,minimum-scale=1,maximum-scale=1,user-scalable=no">
+    </head>
+    <div id="viewer" class="viewer">
+        {{ >hidingPanel }}
+        {{ >viewerMain }}
+    </div>
+</template>

LesionTracker/client/components/viewer.js

@@ -0,0 +1,89 @@
+OHIF = {
+    viewer: {}
+};
+
+OHIF.viewer.imageViewerLoadedSeriesDictionary = {};
+OHIF.viewer.imageViewerCurrentImageIdIndexDictionary = {};
+OHIF.viewer.loadIndicatorDelay = 3000;
+OHIF.viewer.defaultTool = 'wwwc';
+OHIF.viewer.refLinesEnabled = true;
+OHIF.viewer.isPlaying = {};
+
+Meteor.startup(function() {
+    OHIF.viewer.updateImageSynchronizer = new cornerstoneTools.Synchronizer("CornerstoneNewImage", cornerstoneTools.updateImageSynchronizer);
+    OHIF.viewer.functionList = {
+        invert: function(element) {
+            var viewport = cornerstone.getViewport(element);
+            viewport.invert = !viewport.invert;
+            cornerstone.setViewport(element, viewport);
+        },
+        playClip: function(element) {
+            var viewportIndex = $('.imageViewerViewport').index(element);
+            var isPlaying = OHIF.viewer.isPlaying[viewportIndex] || false;
+            if (isPlaying === true) {
+                cornerstoneTools.stopClip(element);
+            } else {
+                cornerstoneTools.playClip(element);
+            }
+            OHIF.viewer.isPlaying[viewportIndex] = !OHIF.viewer.isPlaying[viewportIndex];
+            Session.set('UpdateCINE', Random.id());
+        }
+    };
+
+
+    if (isTouchDevice()) {
+        OHIF.viewer.tooltipConfig = {
+            trigger: 'manual'
+        };
+    } else {
+        OHIF.viewer.tooltipConfig = {
+            trigger: 'hover'
+        };
+    }
+});
+
+function resizeViewports() {
+    // Handle resizing of image viewer viewports
+    // For some reason, this seems to need to be on
+    // another delay, or the resizing won't work properly
+    viewportResizeTimer = setTimeout(function() {
+        var elements = $('.imageViewerViewport');
+        elements.each(function(index) {
+            var element = this;
+            if (!element) {
+                return;
+            }
+            cornerstone.resize(element, true);
+        });
+    }, 1);
+}
+
+Session.setDefault('ActiveViewport', 0);
+Session.setDefault('viewportRows', 1);
+Session.setDefault('viewportColumns', 1);
+
+// Avoid doing DOM manipulation during the resize handler
+// because it is fired very often.
+// Resizing is therefore performed 100 ms after the resize event stops.
+var resizeTimer;
+$(window).on('resize', function() {
+    clearTimeout(resizeTimer);
+    resizeTimer = setTimeout(function() {
+        resizeViewports();
+    }, 100);
+});
+
+Template.viewer.onRendered(function() {
+    var imageViewer = $("#viewer");
+    if (imageViewer) {
+        $('.navbar-default').css({
+            'background-color': '#000000',
+            'border-color': '#101010'
+        });
+        document.body.style.overflow = "hidden";
+        document.body.style.height = '100%';
+        document.body.style.width = '100%';
+        document.body.style.minWidth = 0;
+        document.body.style.position = 'fixed'; // Prevent overscroll on mobile devices
+    }
+});

LesionTracker/client/components/viewerMain/viewerMain.css

@@ -0,0 +1,5 @@
+.viewerMain {
+    width: 88%;
+    height: 100%;
+    margin-left: 12%;
+}

LesionTracker/client/components/viewerMain/viewerMain.html

@@ -0,0 +1,7 @@
+<template name="viewerMain">
+    <div class="viewerMain">
+        {{> toolbar}}
+        {{> imageViewerViewports}}
+        <!--TODO: Bottom lesion table container will be here-->
+    </div>
+</template>

LesionTracker/client/head.html

@@ -0,0 +1,12 @@
+<head>
+    <meta charset="utf-8">
+    <title>Lesion Tracker</title>
+    <meta name="description" content="Prototype viewer application for oncology">
+    <meta name="viewport" content="user-scalable=no, initial-scale=1, minimal-ui, maximum-scale=1, minimum-scale=1" />
+    <link rel="shortcut icon" type="image/png" href="images/logo.png" sizes="16x16 32x32 64x64">
+    <!--Best display for mobile devices-->
+    <meta http-equiv="cleartype" content="on">
+    <meta name="MobileOptimized" content="320">
+    <meta name="HandheldFriendly" content="True">
+    <meta name="apple-mobile-web-app-capable" content="yes">
+</head>

LesionTracker/client/route.js

@@ -0,0 +1,34 @@
+Router.configure({
+  layoutTemplate: 'layout',
+  //loadingTemplate: '',
+  notFoundTemplate: 'notFound'
+});
+
+
+
+Router.route('/', function () {
+  this.render('worklist', {
+  });
+});
+
+ViewerStudies = new Mongo.Collection(null);
+
+Router.route('/viewer/:_id', {
+  layoutTemplate: 'layout',
+  name: 'viewer',
+  onBeforeAction: function() {
+    var self = this;
+    //Session.set('openNewTabEvent', self);
+    
+    Meteor.call('GetStudyMetadata', this.params._id, function(error, study) {
+      //console.log(study);
+      sortStudy(study);
+
+      var studies = [study];
+      Session.set('studies', studies);
+      //Session.set(activeTabId, studies);
+      //Session.set('showContentInTab', true);
+      self.render('viewer');
+    });
+  }
+});

LesionTracker/client/routeHooks.js

@@ -0,0 +1,5 @@
+Router.onBeforeAction(function () {
+
+  // User is logged in, go ahead and route them
+  this.next();
+});

LesionTracker/client/stylesheets/docking-container.css

@@ -0,0 +1,52 @@
+/*****************************/
+/* Toggle */
+/*****************************/
+* {
+    box-sizing: border-box;
+}
+.dockingContainer, .collapseVertical, .collapseHorizontal {
+    -moz-transition: all 0.3s ease-out;
+    -webkit-transition: all 0.3s ease-out;
+    transition: all 0.3s ease-out;
+}
+
+.dockingContainer {
+    -moz-transition: all 0.3s ease-out;
+    -webkit-transition: all 0.3s ease-out;
+    transition: all 0.3s ease-out;
+}
+
+.collapseVertical {
+    opacity: 0;
+    height: 0;
+    border: none;
+}
+
+.collapseHorizontal {
+    width: 30px;
+}
+
+.btnCollapse{
+    position: absolute;
+    top: 0;
+    left: 0;
+    display: block;
+    width: 25px;
+    height: 25px;
+    line-height: 25px;
+    padding: 0;
+    border: 0;
+    border-top: 1px solid #e6e6e6;
+    background: #f6f6f6;
+    color: #666;
+    font-size: 0.875rem;
+    text-align: center;
+    cursor: pointer;
+    z-index: 100;
+}
+
+.btnCollapseIcon-collapse{
+    -moz-transform: rotate(180deg);
+    -webkit-transform: rotate(180deg);
+    transform: rotate(180deg);
+}