feat: cornerstone3D stack and volume viewports (#2787)

* feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
1 parent 86dcaf6293
commit bd1c38c00c
@@ -98,12 +98,12 @@ window.config = {
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    { commandName: 'invertViewport', label: 'Invert', keys: ['i'] },
    {
-      commandName: 'flipViewportVertical',
+      commandName: 'flipViewportHorizontal',
      label: 'Flip Horizontally',
      keys: ['h'],
    },
    {
-      commandName: 'flipViewportHorizontal',
+      commandName: 'flipViewportVertical',
      label: 'Flip Vertically',
      keys: ['v'],
    },
@@ -0,0 +1,97 @@
+---
+id: Introduction
+slug: /
+sidebar_position: 1
+---
+
+The [Open Health Imaging Foundation][ohif-org] (OHIF) Viewer is an open source,
+web-based, medical imaging platform. It aims to provide a core framework for
+building complex imaging applications.
+
+Key features:
+
+- Designed to load large radiology studies as quickly as possible. Retrieves
+  metadata ahead of time and streams in imaging pixel data as needed.
+- Leverages [Cornerstone.js](https://cornerstonejs.org/) for decoding,
+  rendering, and annotating medical images.
+- Works out-of-the-box with Image Archives that support [DICOMWeb][dicom-web].
+  Offers a Data Source API for communicating with archives over proprietary API
+  formats.
+- Provides a plugin framework for creating task-based workflow modes which can
+  re-use core functionality.
+- Beautiful user interface (UI) designed with extensibility in mind. UI
+  components available in a reusable component library built with React.js and
+  Tailwind CSS
+
+![OHIF Viewer Screenshot](./assets/img/OHIF-Viewer.png)
+
+<div className="text--center">
+    <div className="button-group">
+        <a className='button button--primary' href="https://v3-demo.ohif.org/">Try the demo</a>
+        <a className='button button--primary' href="./release-notes">Release Notes</a>
+    </div>
+</div>
+
+## Where to next?
+
+The Open Health Imaging Foundation intends to provide an imaging viewer
+framework which can be easily extended for specific uses. If you find yourself
+unable to extend the viewer for your purposes, please reach out via our [GitHub
+issues][gh-issues]. We are actively seeking feedback on ways to improve our
+integration and extension points.
+
+Check out these helpful links:
+
+- Ready to dive into some code? Check out our
+  [Getting Started Guide](./development/getting-started.md).
+- We're an active, vibrant community.
+  [Learn how you can be more involved.](./development/contributing.md)
+- Feeling lost? Read our [help page](/help).
+
+## Citing OHIF
+
+To cite the OHIF Viewer in an academic publication, please cite
+
+> _Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework
+> for Building Web-Based Imaging Applications to Support Cancer Research_
+>
+>  Erik Ziegler, Trinity Urban, Danny Brown, James Petts, Steve D. Pieper, Rob
+> Lewis, Chris Hafey, and Gordon J. Harris _JCO Clinical Cancer Informatics_, no. 4 (2020), 336-345, DOI:
+> [10.1200/CCI.19.00131](https://www.doi.org/10.1200/CCI.19.00131)
+
+This article is freely available on Pubmed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259879/
+
+
+or, for Lesion Tracker of OHIF v1, please cite:
+
+> _LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer
+> Imaging Research and Clinical Trials_
+>
+> Trinity Urban, Erik Ziegler, Rob Lewis, Chris Hafey, Cheryl Sadow, Annick D.
+> Van den Abbeele and Gordon J. Harris _Cancer Research_, November 1 2017 (77) (21) e119-e122 DOI:
+> [10.1158/0008-5472.CAN-17-0334](https://www.doi.org/10.1158/0008-5472.CAN-17-0334)
+
+This article is freely available on Pubmed Central.
+https://pubmed.ncbi.nlm.nih.gov/29092955/
+
+
+**Note:** If you use or find this repository helpful, please take the time to
+star this repository on Github. This is an easy way for us to assess adoption,
+and it can help us obtain future funding for the project.
+
+## License
+
+MIT © [OHIF](https://github.com/OHIF)
+
+&nbsp;
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[ohif-org]: https://www.ohif.org
+[ohif-demo]: http://v3-demo.ohif.org/
+[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
+[gh-issues]: https://github.com/OHIF/Viewers/issues
+<!-- prettier-ignore-end -->
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+        </g>
+    </g>
+</svg>
@@ -0,0 +1,4 @@
+{
+  "label": "Configuration",
+  "position": 4
+}
@@ -0,0 +1,83 @@
+---
+sidebar_position: 3
+sidebar_label: Configuration
+---
+
+# Viewer: Configuration
+
+The OHIF Viewer Platform strives to be highly configurable and extensible. This
+makes it easier for our community members to keep their "secret sauce" private,
+and incentives contributions back to the platform. The `@ohif/viewer` project of
+the platform is the lynchpin that combines everything to create our application.
+
+There are two configuration mechanisms, one for run-time configuration, allowing
+for changes to be decided based on including different configuration files as
+specified by the 'theme' URL parameters.  This mechanism is intended for
+modifications of data exposed as configurable items by the existing code.  See
+sections below on configuring this type of value.
+
+The other mechanism is the code-configuration mechanism that specifies load
+time configuration.  This is intended to load things that require code level
+changes to OHIF such as adding a new viewer configuration.  This is also used
+for base definitions that are shared site-wide such as the data sources.  This
+was the original configuration mechanism provided, and some of the configurations
+specified there are better suited to the run time loading, but are currently
+left alone as there hasn't been time to move them.
+
+We maintain a number of common viewer application configurations at
+[`<root>/platform/viewer/public/configs`][config-dir].
+
+You can take a look at how to use different configs in the
+[Environment Variables](../platform/environment-variables)
+
+```js title="<root>/platform/viewer/public/configs"
+window.config = {
+  routerBasename: '/',
+  /**
+   * "White Labeling" is used to change the branding, look, and feel of the OHIF
+   * Viewer. These settings, and the color variables that are used by our components,
+   * are the easiest way to rebrand the application.
+   *
+   * More extensive changes are made possible through swapping out the UI library,
+   * Viewer project, or extensions.
+   */
+  whiteLabeling: {
+    /** ... **/
+  },
+  httpErrorHandler: {
+    /** coming soon **/
+  },
+  extensions: [],
+  showStudyList: true,
+  filterQueryParam: false,
+  dataSources: [
+    {
+      friendlyName: 'dcmjs DICOMWeb Server',
+      namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
+      sourceName: 'dicomweb',
+      configuration: {
+        name: 'DCM4CHEE',
+        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        supportsReject: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+        enableStudyLazyLoad: true,
+        supportsFuzzyMatching: true,
+        supportsWildcard: true,
+      },
+    },
+  ],
+};
+```
+
+
+<!--
+  LINKS
+-->
+
+<!-- prettier-ignore-start -->
+[config-dir]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
+<!-- prettier-ignore-end -->
@@ -0,0 +1,4 @@
+{
+  "label": "Data Sources",
+  "position": 2
+}
@@ -0,0 +1,155 @@
+---
+sidebar_position: 3
+sidebar_label: DICOM JSON
+---
+
+# DICOM JSON
+
+You can launch the OHIF Viewer with a JSON file which points to a DICOMWeb
+server as well as a list of study and series instance UIDs along with metadata.
+
+An example would look like
+
+`https://v3-demo.ohif.org/viewer/dicomjson?url=https://ohif-dicom-json-example.s3.amazonaws.com/LIDC-IDRI-0001.json`
+
+As you can see the url to the location of the JSON file is passed in the query
+after the `dicomjson` string, which is
+`https://ohif-dicom-json-example.s3.amazonaws.com/LIDC-IDRI-0001.json` (this
+json file has been generated by OHIF team and stored in an amazon s3 bucket for
+the purpose of the guide).
+
+## DICOM JSON sample
+
+Here we are using the LIDC-IDRI-0001 case which is a sample of the LIDC-IDRI
+dataset. Let's have a look at the JSON file:
+
+### Metadata
+
+JSON file stores the metadata for the study level, series level and instance
+level. A JSON launch file should follow the same structure as the one below.
+
+Note that at the instance level metadata we are storing both the `metadata` and
+also the `url` for the dicom file on the dicom server. In this case we are
+referring to
+`dicomweb:https://ohif-dicom-json-example.s3.amazonaws.com/LIDC-IDRI-0001/01-01-2000-30178/3000566.000000-03192/1-001.dcm`
+which is stored in another directory in our s3. (You can actually try
+downloading the dicom file by opening the url in your browser).
+
+```json
+{
+  "studies": [
+    // first study metadata
+    {
+      "StudyInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.298806137288633453246975630178",
+      "StudyDate": "20000101",
+      "StudyTime": "",
+      "PatientName": "",
+      "PatientID": "LIDC-IDRI-0001",
+      "AccessionNumber": "",
+      "PatientAge": "",
+      "PatientSex": "",
+      "series": [
+        // first series metadata
+        {
+          "SeriesInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.179049373636438705059720603192",
+          "SeriesNumber": 3000566,
+          "Modality": "CT",
+          "SliceThickness": 2.5,
+          "instances": [
+            // first instance metadata
+            {
+              "metadata": {
+                "Columns": 512,
+                "Rows": 512,
+                "InstanceNumber": 1,
+                "SOPClassUID": "1.2.840.10008.5.1.4.1.1.2",
+                "PhotometricInterpretation": "MONOCHROME2",
+                "BitsAllocated": 16,
+                "BitsStored": 16,
+                "PixelRepresentation": 1,
+                "SamplesPerPixel": 1,
+                "PixelSpacing": [0.703125, 0.703125],
+                "HighBit": 15,
+                "ImageOrientationPatient": [1, 0, 0, 0, 1, 0],
+                "ImagePositionPatient": [-166, -171.699997, -10],
+                "FrameOfReferenceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.229925374658226729607867499499",
+                "ImageType": ["ORIGINAL", "PRIMARY", "AXIAL"],
+                "Modality": "CT",
+                "SOPInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.262721256650280657946440242654",
+                "SeriesInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.179049373636438705059720603192",
+                "StudyInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.298806137288633453246975630178",
+                "WindowCenter": -600,
+                "WindowWidth": 1600,
+                "SeriesDate": "20000101"
+              },
+              "url": "dicomweb:https://ohif-dicom-json-example.s3.amazonaws.com/LIDC-IDRI-0001/01-01-2000-30178/3000566.000000-03192/1-001.dcm"
+            },
+            // second instance metadata
+            {
+              "metadata": {
+                "Columns": 512,
+                "Rows": 512,
+                "InstanceNumber": 2,
+                "SOPClassUID": "1.2.840.10008.5.1.4.1.1.2",
+                "PhotometricInterpretation": "MONOCHROME2",
+                "BitsAllocated": 16,
+                "BitsStored": 16,
+                "PixelRepresentation": 1,
+                "SamplesPerPixel": 1,
+                "PixelSpacing": [0.703125, 0.703125],
+                "HighBit": 15,
+                "ImageOrientationPatient": [1, 0, 0, 0, 1, 0],
+                "ImagePositionPatient": [-166, -171.699997, -12.5],
+                "FrameOfReferenceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.229925374658226729607867499499",
+                "ImageType": ["ORIGINAL", "PRIMARY", "AXIAL"],
+                "Modality": "CT",
+                "SOPInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.512235483218154065970649917292",
+                "SeriesInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.179049373636438705059720603192",
+                "StudyInstanceUID": "1.3.6.1.4.1.14519.5.2.1.6279.6001.298806137288633453246975630178",
+                "WindowCenter": -600,
+                "WindowWidth": 1600,
+                "SeriesDate": "20000101"
+              },
+              "url": "dicomweb:https://ohif-dicom-json-example.s3.amazonaws.com/LIDC-IDRI-0001/01-01-2000-30178/3000566.000000-03192/1-002.dcm"
+            }
+            // ..... other instances metadata
+          ]
+        }
+        // ... other series metadata
+      ],
+      "NumInstances": 133,
+      "Modalities": "CT"
+    }
+    // second study metadata
+  ]
+}
+```
+
+![](../../assets/img/dicom-json.png)
+
+### Local Demo
+
+You can run OHIF with a JSON data source against you local datasets (given that
+their JSON metadata is extracted).
+
+First you need to put the JSON file and the folder containing the dicom files
+inside your `public` folder. Since files are served from your local server the
+`url` for the JSON file will be `http://localhost:3000/LIDC-IDRI-0001.json` and
+the dicom files will be
+`dicomweb:http://localhost:3000/LIDC-IDRI-0001/01-01-2000-30178/3000566.000000-03192/1-001.dcm`.
+
+After `yarn install` and running `yarn dev` and opening the browser at
+`http://localhost:3000/viewer/dicomjson?url=http://localhost:3000/LIDC-IDRI-0001.json`
+will display the viewer.
+
+Download JSON file from
+[here](https://www.dropbox.com/sh/zvkv6mrhpdze67x/AADLGK46WuforD2LopP99gFXa?dl=0)
+
+Sample DICOM files can be downloaded from
+[TCIA](https://wiki.cancerimagingarchive.net/display/Public/LIDC-IDRI) or
+directly from
+[here](https://www.dropbox.com/sh/zvkv6mrhpdze67x/AADLGK46WuforD2LopP99gFXa?dl=0)
+
+Your public folder should look like this:
+
+![](../../assets/img/dicom-json-public.png)
@@ -0,0 +1,191 @@
+---
+sidebar_position: 1
+sidebar_label: DICOMweb
+---
+
+# DICOMweb
+
+## Set up a local DICOM server
+
+ATTENTION! Already have a remote or local server? Skip to the
+[configuration section](#configuration-learn-more) below.
+
+While the OHIF Viewer can work with any data source, the easiest to configure
+are the ones that follow the [DICOMWeb][dicom-web] spec.
+
+1. Choose and install an Image Archive
+2. Upload data to your archive (e.g. with DCMTK's [storescu][storescu] or your
+   archive's web interface)
+3. Keep the server running
+
+For our purposes, we will be using `Orthanc`, but you can see a list of
+[other Open Source options](#open-source-dicom-image-archives) below.
+
+### Requirements
+
+- Docker
+  - [Docker for Mac](https://docs.docker.com/docker-for-mac/)
+  - [Docker for Windows (recommended)](https://docs.docker.com/docker-for-windows/)
+  - [Docker Toolbox for Windows](https://docs.docker.com/toolbox/toolbox_install_windows/)
+
+_Not sure if you have `docker` installed already? Try running `docker --version`
+in command prompt or terminal_
+
+> If you are using `Docker Toolbox` you need to change the _PROXY_DOMAIN_
+> parameter in _platform/viewer/package.json_ to http://192.168.99.100:8042 or
+> the ip docker-machine ip throws. This is the value [`WebPack`][webpack-proxy]
+> uses to proxy requests
+
+## Open Source DICOM Image Archives
+
+There are a lot of options available to you to use as a local DICOM server. Here
+are some of the more popular ones:
+
+| Archive                                       | Installation                       |
+| --------------------------------------------- | ---------------------------------- |
+| [DCM4CHEE Archive 5.x][dcm4chee]              | [W/ Docker][dcm4chee-docker]       |
+| [Orthanc][orthanc]                            | [W/ Docker][orthanc-docker]        |
+| [DICOMcloud][dicomcloud] (**DICOM Web only**) | [Installation][dicomcloud-install] |
+| [OsiriX][osirix] (**Mac OSX only**)           | Desktop Client                     |
+| [Horos][horos] (**Mac OSX only**)             | Desktop Client                     |
+
+_Feel free to make a Pull Request if you want to add to this list._
+
+Below, we will focus on `DCM4CHEE` and `Orthanc` usage:
+
+### Running Orthanc
+
+_Start Orthanc:_
+
+```bash
+# Runs orthanc so long as window remains open
+yarn run orthanc:up
+```
+
+_Upload your first Study:_
+
+1. Navigate to
+   [Orthanc's web interface](http://localhost:8042/app/explorer.html) at
+   `http://localhost:8042/app/explorer.html` in a web browser.
+2. In the top right corner, click "Upload"
+3. Click "Select files to upload..." and select one or more DICOM files
+4. Click "Start the upload"
+
+#### Orthanc: Learn More
+
+You can see the `docker-compose.yml` file this command runs at
+[`<project-root>/.docker/Nginx-Orthanc/`][orthanc-docker-compose], and more on
+Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
+
+#### Connecting to Orthanc
+
+Now that we have a local Orthanc instance up and running, we need to configure
+our web application to connect to it. Open a new terminal window, navigate to
+this repository's root directory, and run:
+
+```bash
+# If you haven't already, enable yarn workspaces
+yarn config set workspaces-experimental true
+
+# Restore dependencies
+yarn install
+
+# Run our dev command, but with the local orthanc config
+yarn run dev:orthanc
+```
+
+#### Configuration: Learn More
+
+> For more configuration fun, check out the
+> [Essentials Configuration](../index.md) guide.
+
+Let's take a look at what's going on under the hood here. `yarn run dev:orthanc`
+is running the `dev:orthanc` script in our project's `package.json` (inside
+`platform/viewer`). That script is:
+
+```js
+cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
+```
+
+- `cross-env` sets three environment variables
+  - PROXY_TARGET: `/dicom-web`
+  - PROXY_DOMAIN: `http://localhost:8042`
+  - APP_CONFIG: `config/docker_nginx-orthanc.js`
+- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
+  file. It will watch for changes and update as we develop.
+
+`PROXY_TARGET` and `PROXY_DOMAIN` tell our development server to proxy requests
+to `Orthanc`. This allows us to bypass CORS issues that normally occur when
+requesting resources that live at a different domain.
+
+The `APP_CONFIG` value tells our app which file to load on to `window.config`.
+By default, our app uses the file at
+`<project-root>/platform/viewer/public/config/default.js`. Here is what that
+configuration looks like:
+
+```js
+window.config = {
+  routerBasename: '/',
+  extensions: [],
+  modes: [],
+  showStudyList: true,
+  dataSources: [
+    {
+      friendlyName: 'dcmjs DICOMWeb Server',
+      namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
+      sourceName: 'dicomweb',
+      configuration: {
+        name: 'DCM4CHEE',
+        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        supportsReject: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+        enableStudyLazyLoad: true,
+        supportsFuzzyMatching: true,
+        supportsWildcard: true,
+      },
+    },
+  ],
+  defaultDataSourceName: 'dicomweb',
+};
+```
+
+To learn more about how you can configure the OHIF Viewer, check out our
+[Configuration Guide](../index.md).
+
+### Running DCM4CHEE
+
+dcm4che is a collection of open source applications for healthcare enterprise
+written in Java programming language which implements DICOM standard. dcm4chee
+(extra 'e' at the end) is dcm4che project for an Image Manager/Image Archive
+which provides storage, retrieval and other functionalities. You can read more
+about dcm4chee in their website [here](https://www.dcm4che.org/)
+
+DCM4chee installation is out of scope for these tutorials and can be found
+[here](https://github.com/dcm4che/dcm4chee-arc-light/wiki/Run-minimum-set-of-archive-services-on-a-single-host)
+
+An overview of steps for running OHIF Viewer using a local DCM4CHEE is shown
+below:
+
+<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
+    <iframe src="https://player.vimeo.com/video/557570043?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
+</div>
+
+[dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
+[dcm4chee-docker]:
+  https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker
+[orthanc]: https://www.orthanc-server.com/
+[orthanc-docker]: http://book.orthanc-server.com/users/docker.html
+[dicomcloud]: https://github.com/DICOMcloud/DICOMcloud
+[dicomcloud-install]: https://github.com/DICOMcloud/DICOMcloud#running-the-code
+[osirix]: http://www.osirix-viewer.com/
+[horos]: https://www.horosproject.org/
+[default-config]:
+  https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js
+[html-templates]:
+  https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/html-templates
+[config-files]:
+  https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config