feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
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---
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sidebar_position: 7
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sidebar_label: Continous Integration
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---
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# Continous Integration (CI)
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This repository uses `CircleCI` and `Netlify` for continous integration.
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## Deploy Previews
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[Netlify Deploy previews][deploy-previews] are generated for every pull request.
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They allow pull request authors and reviewers to "Preview" the OHIF Viewer as if
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the changes had been merged.
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Deploy previews can be configured by modifying the `netlify.toml` file in the
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root of the repository. Some additional scripts/assets for netlify are included
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in the root `.netlify` directory.
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## Workflows
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[CircleCI Workflows][circleci-workflows] are a set of rules for defining a
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collection of jobs and their run order. They are self-documenting and their
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configuration can be found in our CircleCI configuration file:
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`.circleci/config.yml`.
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### Workflow: PR_CHECKS
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The PR_CHECKS workflow (Pull Request Checks) runs our automated unit and
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end-to-end tests for every code check-in. These tests must all pass before code
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can be merged to our `master` branch.
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### Workflow: PR_OPTIONAL_DOCKER_PUBLISH
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The PR_OPTIONAL_DOCKER_PUBLISH workflow allows for "manual approval" to publish
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the pull request as a tagged docker image. This is helpful when changes need to
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be tested with the Google Adapter before merging to `master`.
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> NOTE: This workflow will fail unless it's for a branch on our `upstream`
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> repository. If you need this functionality, but the branch is from a fork,
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> merge the changes to a short-lived `feature/` branch on `upstream`
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### Workflow: DEPLOY
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The DEPLOY workflow deploys the OHIF Viewer when changes are merged to master.
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It uses the Netlify CLI to deploy assets created as part of the repository's PWA
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Build process (`yarn run build`). The workflow allows for "Manual Approval" to
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promote the build to `STAGING` and `PRODUCTION` environments.
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| Environment | Description | URL |
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| ----------- | ---------------------------------------------------------------------------------- | --------------------------------------------- |
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| Development | Always reflects latest changes on `master` branch. | [Netlify][netlify-dev] / [OHIF][ohif-dev] |
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| Staging | For manual testing before promotion to prod. Keeps development workflow unblocked. | [Netlify][netlify-stage] / [OHIF][ohif-stage] |
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| Production | Stable, tested, updated less frequently. | [Netlify][netlify-prod] / [OHIF][ohif-prod] |
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### Workflow: RELEASE
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The RELEASE workflow publishes our `npm` packages, updated documentation, and
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`docker` image when changes are merged to master. `Lerna` and "Semantic Commit
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Syntax" are used to independently version and publish the many packages in our
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monorepository. If a new version is cut/released, a Docker image is created.
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Documentation is generated with `gitbook` and pushed to our `gh-pages` branch.
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GitHub hosts the `gh-pages` branch with GitHub Pages.
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- Platform Packages: https://github.com/ohif/viewers/#platform
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- Extension Packages: https://github.com/ohif/viewers/#extensions
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- Documentation: https://docs.ohif.org/
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<!--
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LINKS
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-->
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<!-- prettier-ignore-start -->
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[deploy-previews]: https://www.netlify.com/blog/2016/07/20/introducing-deploy-previews-in-netlify/
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[circleci-workflows]: https://circleci.com/docs/2.0/workflows/
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[netlify-dev]: https://ohif-dev.netlify.com
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[netlify-stage]: https://ohif-stage.netlify.com
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[netlify-prod]: https://ohif-prod.netlify.com
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[ohif-dev]: https://viewer-dev.ohif.org
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[ohif-stage]: https://viewer-stage.ohif.org
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[ohif-prod]: https://viewer-prod.ohif.org
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<!-- prettier-ignore-end -->
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