feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
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@@ -1,14 +1,14 @@
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import React, { useEffect, useRef } from 'react'
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import classnames from 'classnames'
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import React, { useEffect, useRef } from 'react';
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import classnames from 'classnames';
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import { useNavigate } from 'react-router-dom';
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import { MODULE_TYPES } from '@ohif/core'
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import { MODULE_TYPES } from '@ohif/core';
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import Dropzone from 'react-dropzone'
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import filesToStudies from './filesToStudies'
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import Dropzone from 'react-dropzone';
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import filesToStudies from './filesToStudies';
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import { extensionManager } from '../../App.jsx'
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import { extensionManager } from '../../App.tsx';
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import { Icon, Button } from '@ohif/ui'
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import { Icon, Button } from '@ohif/ui';
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const getLoadButton = (onDrop, text, isDir) => {
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return (
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@@ -21,7 +21,7 @@ const getLoadButton = (onDrop, text, isDir) => {
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disabled={false}
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endIcon={<Icon name="launch-arrow" />} // launch-arrow | launch-info
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className={classnames('font-bold', 'ml-2')}
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onClick={() => { }}
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onClick={() => {}}
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>
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{text}
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{isDir ? (
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@@ -36,41 +36,42 @@ const getLoadButton = (onDrop, text, isDir) => {
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</Button>
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</div>
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)}
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</Dropzone>)
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}
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</Dropzone>
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);
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};
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function Local() {
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const navigate = useNavigate();
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const dropzoneRef = useRef()
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const dropzoneRef = useRef();
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// Initializing the dicom local dataSource
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const dataSourceModules = extensionManager.modules[MODULE_TYPES.DATA_SOURCE]
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const dataSourceModules = extensionManager.modules[MODULE_TYPES.DATA_SOURCE];
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const localDataSources = dataSourceModules.reduce((acc, curr) => {
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const mods = []
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curr.module.forEach((mod) => {
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const mods = [];
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curr.module.forEach(mod => {
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if (mod.type === 'localApi') {
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mods.push(mod)
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mods.push(mod);
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}
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})
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return acc.concat(mods)
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}, [])
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});
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return acc.concat(mods);
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}, []);
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const firstLocalDataSource = localDataSources[0]
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const dataSource = firstLocalDataSource.createDataSource({})
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const firstLocalDataSource = localDataSources[0];
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const dataSource = firstLocalDataSource.createDataSource({});
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const onDrop = async (acceptedFiles) => {
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const studies = await filesToStudies(acceptedFiles, dataSource)
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const onDrop = async acceptedFiles => {
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const studies = await filesToStudies(acceptedFiles, dataSource);
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// Todo: navigate to work list and let user select a mode
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navigate(`/viewer/dicomlocal?StudyInstanceUIDs=${studies[0]}`)
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}
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navigate(`/viewer/dicomlocal?StudyInstanceUIDs=${studies[0]}`);
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};
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// Set body style
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useEffect(() => {
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document.body.classList.add('bg-black')
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document.body.classList.add('bg-black');
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return () => {
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document.body.classList.remove('bg-black')
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}
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}, [])
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document.body.classList.remove('bg-black');
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};
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}, []);
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return (
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<Dropzone ref={dropzoneRef} onDrop={onDrop} noClick>
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@@ -104,7 +105,7 @@ function Local() {
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</div>
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)}
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</Dropzone>
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)
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);
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}
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export default Local
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export default Local;
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