Updates to Lesion Tracker lesionTable and Packaging
This commit is contained in:
Erik Ziegler committed
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4721400b34
commit
e2000480d3
36 files changed
+480
-176
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@@ -34,3 +34,4 @@ stylus
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fortawesome:fontawesome
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random
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reactive-var
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lesiontracker
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@@ -50,6 +50,7 @@ iron:router@1.0.12
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iron:url@1.0.11
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jquery@1.11.4
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launch-screen@1.0.4
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lesiontracker@0.0.1
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livedata@1.0.15
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localstorage@1.0.5
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logging@1.0.8
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@@ -1,39 +0,0 @@
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(function($) {
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//Collapse the container
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function collapseContainer ( container ) {
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container.toggleClass("collapseHorizontal");
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var btnCollapse = container.find(".btnCollapse");
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}
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//function add collapse button
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function addButtonCollapse ( container ) {
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var btnCollapse = document.createElement("button");
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btnCollapse.innerHTML = ">";
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$(btnCollapse).addClass ("btnCollapse");
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btnCollapse.onclick = function() { // Note this is a function
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collapseContainer(container);
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};
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container.append(btnCollapse);
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}
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$.fn.dockingContainer = function(options) {
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var self = this;
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var opts = $.extend( {}, $.fn.dockingContainer.defaults, options);
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//Set container class
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this.addClass("dockingContainer");
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//Add btnCollapse
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addButtonCollapse(this);
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return this;
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};
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//Defaults
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$.fn.dockingContainer.defaults = {
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background: "black"
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};
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}(jQuery));
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@@ -1,285 +0,0 @@
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var lineIndex = 0; //This holds drawn line index
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var cornerstoneTools = (function ($, cornerstone, cornerstoneMath, cornerstoneTools) {
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"use strict";
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if(cornerstoneTools === undefined) {
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cornerstoneTools = {};
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}
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var toolType = "lesion";
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///////// BEGIN ACTIVE TOOL ///////
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function createNewMeasurement(mouseEventData)
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{
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var element = mouseEventData.element;
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var lesionCounter = "";
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//setting name of lesion
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$(element).on("LesionNameSet", function(e,counter){
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lesionCounter = counter;
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});
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//Listens LesionToolModified event and calls measurementModified function when lesion measurement is changed or updated.
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$(element).on("LesionToolModified", measurementModified);
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$(element).trigger("LesionMeasurementCreated", mouseEventData);
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// create the measurement data for this tool with the end handle activated
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var measurementData = {
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visible : true,
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active : true,
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handles : {
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start : {
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x : mouseEventData.currentPoints.image.x,
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y : mouseEventData.currentPoints.image.y,
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highlight: true,
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active: false
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},
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end: {
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x : mouseEventData.currentPoints.image.x,
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y : mouseEventData.currentPoints.image.y,
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highlight: true,
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active: true
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}
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},
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index: lineIndex,
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measurementText: "",
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linkedTextCoords: {
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start : {
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x : mouseEventData.currentPoints.image.x,
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y : mouseEventData.currentPoints.image.y,
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highlight: true,
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active: false
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},
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end: {
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x : mouseEventData.currentPoints.image.x,
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y : mouseEventData.currentPoints.image.y,
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highlight: true,
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active: true
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},
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init: false
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},
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lesionName: "Target "+lesionCounter,
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isDeleted: false,
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lineNumber:"" //Indicates line number on image
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};
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lineIndex++;
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return measurementData;
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}
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///////// END ACTIVE TOOL ///////
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function pointNearTool(element, data, coords)
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{
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var lineSegment = {
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start: cornerstone.pixelToCanvas(element, data.handles.start), end: cornerstone.pixelToCanvas(element, data.handles.end)
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};
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var distanceToPoint = cornerstoneMath.lineSegment.distanceToPoint(lineSegment, coords);
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return (distanceToPoint < 25);
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}
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function pointNearToolForText(element, data, coords) {
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var lineSegment = {
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start: cornerstone.pixelToCanvas(element, data.linkedTextCoords.start), end: cornerstone.pixelToCanvas(element, data.linkedTextCoords.end)
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};
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var distanceToPoint = cornerstoneMath.lineSegment.distanceToPoint(lineSegment, coords);
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return (distanceToPoint < 30);
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}
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///////// BEGIN IMAGE RENDERING ///////
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function onImageRendered(e, eventData) {
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// if we have no toolData for this element, return immediately as there is nothing to do
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var toolData = cornerstoneTools.getToolState(e.currentTarget, toolType);
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if (toolData === undefined) {
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return;
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}
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// we have tool data for this element - iterate over each one and draw it
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var context = eventData.canvasContext.canvas.getContext('2d');
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context.setTransform(1, 0, 0, 1, 0, 0);
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var color;
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var lineWidth = cornerstoneTools.toolStyle.getToolWidth();
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var font = cornerstoneTools.textStyle.getFont();
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var config = cornerstoneTools.length.getConfiguration();
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for (var i = 0; i < toolData.data.length; i++) {
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context.save();
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// configurable shadow
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if (config && config.shadow) {
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context.shadowColor = '#000000';
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context.shadowOffsetX = +1;
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context.shadowOffsetY = +1;
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}
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var data = toolData.data[i];
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if (data.active) {
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color = cornerstoneTools.toolColors.getActiveColor();
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} else {
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color = cornerstoneTools.toolColors.getToolColor();
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}
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// draw the line
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var handleStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.handles.start);
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var handleEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.handles.end);
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context.beginPath();
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context.strokeStyle = color;
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context.lineWidth = lineWidth;
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context.moveTo(handleStartCanvas.x, handleStartCanvas.y);
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context.lineTo(handleEndCanvas.x, handleEndCanvas.y);
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context.stroke();
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// draw the handles
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cornerstoneTools.drawHandles(context, eventData, data.handles, color);
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//Set coordinates of text
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var linkedTextStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.start);
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var linkedTextEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.end);
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if(!data.linkedTextCoords.init){
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data.linkedTextCoords.start.x = data.handles.start.x + 50;
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data.linkedTextCoords.start.y = data.handles.start.y + 40;
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linkedTextStartCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.start);
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//Set end point of linkedTextCoords
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data.linkedTextCoords.end.x = data.linkedTextCoords.start.x + 50;
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data.linkedTextCoords.end.y = data.linkedTextCoords.start.y + 30;
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linkedTextEndCanvas = cornerstone.pixelToCanvas(eventData.element, data.linkedTextCoords.end);
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//initialized coordinates of text
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data.linkedTextCoords.init = true;
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}
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//Draw linked line as dashed
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context.setLineDash([2,3]);
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context.beginPath();
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context.strokeStyle = color;
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context.lineWidth = 1 / eventData.viewport.scale;
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var mid = {
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x:(handleStartCanvas.x + handleEndCanvas.x) / 2, y:(handleStartCanvas.y + handleEndCanvas.y) / 2
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};
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context.moveTo(mid.x, mid.y);
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context.lineTo(linkedTextStartCanvas.x + 20, linkedTextStartCanvas.y + 20);
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context.stroke();
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// Draw the text
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context.fillStyle = color;
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context.font = font;
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var dx = (data.handles.start.x - data.handles.end.x) * (eventData.image.columnPixelSpacing || 1);
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var dy = (data.handles.start.y - data.handles.end.y) * (eventData.image.rowPixelSpacing || 1);
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var length = Math.sqrt(dx * dx + dy * dy);
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var suffix = ' mm';
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if (!eventData.image.rowPixelSpacing || !eventData.image.columnPixelSpacing) {
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suffix = ' pixels';
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}
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var text = '' + length.toFixed(2) + suffix;
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var textCoords = {
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x: linkedTextStartCanvas.x, y: linkedTextStartCanvas.y
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};
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cornerstoneTools.drawTextBox(context, data.lesionName, textCoords.x, textCoords.y, color);
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cornerstoneTools.drawTextBox(context, text, textCoords.x, textCoords.y + 20, color);
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//Set measurement text to show lesion table
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data.measurementText = length.toFixed(2);
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$(eventData.enabledElement.element).trigger("LesionTextChanged",data);
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context.restore();
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}
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}
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///////// END IMAGE RENDERING ///////
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//This function is called from cornerstone-viewport.html and updates lesion measurement and makes the lesion active
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function measurementModified(e, eventObject){
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var start = new Date();
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var enabledElement = eventObject.enabledElement;
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var lineIndex = eventObject.lineIndex;
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var type = eventObject.type;
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// if we have no toolData for this element, return immediately as there is nothing to do
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var toolData = cornerstoneTools.getToolState(e.currentTarget, toolType);
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if (toolData === undefined) {
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return;
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}
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//If type is delete, remove measurement
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if(type === "delete") {
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var deletedDataIndex = -1;
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for (var i = 0; i < toolData.data.length; i++) {
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var data = toolData.data[i];
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//When click a row of table measurements, measurement will be active and color will be green
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if (data.index === eventObject.lineIndex && eventObject.type !== "active") {
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data.visible = false;
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deletedDataIndex = i;
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}
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}
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if (deletedDataIndex >= 0 && deletedDataIndex < toolData.data.length) {
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toolData.data.splice(deletedDataIndex, 1);
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}
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} else {
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for (var i = 0; i < toolData.data.length; i++) {
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var data = toolData.data[i];
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//When click a row of table measurements, measurement will be active and color will be green
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if (data.index === eventObject.lineIndex && eventObject.type === "active") {
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data.active = true;
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} else{
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data.active = false;
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}
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}
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}
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enabledElement.image.render(enabledElement, true);
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var context = enabledElement.canvas.getContext('2d');
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var end = new Date();
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var diff = end - start;
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//console.log(diff + ' ms');
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var eventData = {
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viewport : enabledElement.viewport,
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element : enabledElement.element,
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image : enabledElement.image,
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enabledElement : enabledElement,
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canvasContext: context,
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measurementText: "",
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renderTimeInMs : diff,
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lineIndex : lineIndex,
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type : type //Holds image will be deleted or active
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};
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enabledElement.invalid = false;
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onImageRendered(e, eventData);
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}
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// module exports
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cornerstoneTools.lesion = cornerstoneTools.mouseButtonTool({
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createNewMeasurement : createNewMeasurement,
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onImageRendered: onImageRendered,
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pointNearTool : pointNearTool,
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pointNearToolForText: pointNearToolForText,
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toolType : toolType
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});
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cornerstoneTools.lesionTouch = cornerstoneTools.touchTool({
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createNewMeasurement: createNewMeasurement,
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onImageRendered: onImageRendered,
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pointNearTool: pointNearTool,
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pointNearToolForText: pointNearToolForText,
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toolType: toolType
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});
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return cornerstoneTools;
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}($, cornerstone, cornerstoneMath, cornerstoneTools));
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@@ -1,5 +0,0 @@
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<template name="hidingPanel">
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<div class="hidingPanel">
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{{> studyBrowser}}
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</div>
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</template>
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@@ -1,6 +0,0 @@
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.hidingPanel
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width: 12%
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height: 100%
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padding-top: 35px
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position: relative
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float: left
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@@ -1,26 +0,0 @@
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<template name="layoutLesionTracker">
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<nav class="navbar navbar-default" role="navigation">
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<div class="container-fluid">
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<div class="navbar-header">
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<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
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<span class="sr-only">Toggle navigation</span>
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<span class="icon-bar"></span>
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<span class="icon-bar"></span>
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<span class="icon-bar"></span>
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</button>
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<a class="navbar-brand" href="/">
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<img height="30px" src="/images/logo.png">
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<h4 class="name">OHIF Lesion Tracker</h4>
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</a>
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</div>
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<div id="navbar" class="navbar-collapse collapse">
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<ul class="nav navbar-nav navbar-right">
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<li>
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<a href="http://www.tumormetrics.org">About</a>
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</li>
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</ul>
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</div>
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</div>
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</nav>
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{{> yield}}
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</template>
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@@ -1,33 +0,0 @@
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.navbar
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margin-bottom: 0
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border-radius: 0
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color: #888888
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background-color: #060606
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border: none
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font-family: "Sanchez"
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color: #C1C1C1
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.navbar-default .navbar-nav > li > a
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color: #C1C1C1
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font-weight: bold
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font-size: 12pt
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.navbar-form
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margin: 0
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padding: 15px 3px
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.navbar-brand
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img
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float: left
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margin-right: 10px
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margin-top: -8px
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h4.name
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float: left
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margin: 0
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font-family: "Sanchez"
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color: #C1C1C1
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@media (min-width: 768px)
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.navbar
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border-radius: 0px
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@@ -1,3 +0,0 @@
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<template name="lesionDialog">
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{{> lesionLocationDialog}}
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</template>
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@@ -1,23 +0,0 @@
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Template.lesionDialog.onRendered(function () {
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// Listen lesionMeaurementCreated Event and when this event is triggered, show lesionLocationDialog Box
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var viewportIndex = this.data.activeViewport.get();
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$(document).on("LesionMeasurementCreated",function(e, eventData){
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console.log("lesionMeasurementCreated");
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var data = {};
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data.viewportIndex = viewportIndex;
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//Set Lesion Table Data to insert into lesion table
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setLesionTableData(data);
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if( !Session.get("lesionLocationSelected") ) {
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$("#modal-dialog-container").css({
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"top": eventData.currentPoints.page.y,
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"left": eventData.currentPoints.page.x
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});
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$("#lesionDialog").modal("show");
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}
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});
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});
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Whitespace-only changes.
@@ -1,20 +0,0 @@
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<template name="lesionLocationDialog">
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<div class="modal fade" id="lesionDialog" style=" background-color: transparent;">
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<div id="modal-dialog-container" class="modal-dialog modal-sm" style="position: absolute; border: none; ">
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<div class="modal-content" style="padding: 10px;">
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<div class="dialogHeader">
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<div style="float:left;"><h4>Select Lesion Location</h4></div>
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<div style="float:right;"><button class="btn" id="btnCloseLesionPopup" style="outline: 0; border: none; background-color: transparent;"><i class="fa fa-close"></i></button></div>
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</div>
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<div class="dialogContent" style="margin-bottom: 20px;">
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<div class="lesionLocation">
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<label>Lesion Location</label>
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<select id="selectLesionLocation" style="margin-top:5px;">
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<option value="-1"></option>
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</select>
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</div>
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</div>
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</div>
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</div>
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</div>
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</template>
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@@ -1,49 +0,0 @@
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//fill selectLesionLocation element
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var lesionLocationsArray = [
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{location:"Brain Brainstem",hasDescription:false, description:""},
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{location:"Brain Cerebellum Left",hasDescription:false, description:""},
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{location:"Brain Cerebrum Left",hasDescription:false, description:""},
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{location:"Brain Cerebrum Right",hasDescription:false, description:""},
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{location:"Brain Multiple Sites",hasDescription:false, description:""}
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];
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Template.lesionLocationDialog.onRendered(function () {
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function fillSelectLesionLocation () {
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var el = $("#selectLesionLocation");
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el.find('option:not(:first)').remove();
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$.each(lesionLocationsArray, function(key, value) {
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el.append("<option value='" + key+ "'>" + value.location + "</option>");
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||||
});
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||||
}
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||||
// Fill dropdown
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||||
fillSelectLesionLocation();
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||||
});
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||||
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Template.lesionLocationDialog.events({
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'click button#btnCloseLesionPopup': function (e) {
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$("#lesionDialog").modal("hide");
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||||
},
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||||
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||||
'change select#selectLesionLocation': function (e) {
|
||||
var el = $(e.target);
|
||||
var selectedLocationIndex = el.val();
|
||||
if(selectedLocationIndex !== "-1"){
|
||||
|
||||
var locationObj = lesionLocationsArray[selectedLocationIndex];
|
||||
|
||||
// Trigger location selected event
|
||||
$(document).trigger("lesionLocationSelected",locationObj);
|
||||
|
||||
// Set activeModule parameters in index.html
|
||||
$("#lesionDialog").modal("hide");
|
||||
|
||||
// Select first option
|
||||
el.val($("#selectLesionLocation option:first").val());
|
||||
|
||||
// Set lesion location selected session to prevent open
|
||||
Session.set("lesionLocationSelected", true);
|
||||
}
|
||||
}
|
||||
});
|
||||
-15
@@ -1,15 +0,0 @@
|
||||
<template name="lesionMeasurementContainer">
|
||||
<div class="lesionMeasurementContainer">
|
||||
<table class="lesionTable" id="tblLesion">
|
||||
<thead>
|
||||
<tr class="headRow">
|
||||
<th>#</th>
|
||||
<th>Location</th>
|
||||
<th>LD</th>
|
||||
<th style="text-align: center;"><i class="fa fa-times fa-lg"></i></th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody></tbody>
|
||||
</table>
|
||||
</div>
|
||||
</template>
|
||||
-28
@@ -1,28 +0,0 @@
|
||||
var lesionTableData;
|
||||
|
||||
setLesionTableData = function (data) {
|
||||
lesionTableData = data;
|
||||
};
|
||||
|
||||
getLesionTableData = function () {
|
||||
return lesionTableData;
|
||||
};
|
||||
|
||||
returnTblStr = function (obj) {
|
||||
return '<tr id="' + obj.lineIndex + '" toolType="' + obj.toolType + '"><td class="tblRow">1</td><td class="tblRow">' + obj.lesionLocationObj.location + '</td><td class="tblRow">' + obj.lesions + '</td><td id="' + obj.lineIndex + '" toolType="' + obj.toolType + '"><button type="button" class="btnRemove fa fa-times fa-lg" title="Remove"></button></td></tr>';
|
||||
};
|
||||
|
||||
Template.lesionMeasurementContainer.onRendered( function () {
|
||||
console.log("rendered lesion");
|
||||
//Link lesionLocationSelected event
|
||||
$(document).on("lesionLocationSelected",function(event,data ){
|
||||
var lesionData = getLesionTableData();
|
||||
lesionData.lesionLocationObj = data;
|
||||
var tabId = lesionData.tabId;
|
||||
var el_index = lesionData.viewportIndex;
|
||||
var lesionTables = $(".lesionTable");
|
||||
var tableEl = lesionTables.get(el_index);
|
||||
var tblStr = returnTblStr(lesionData);
|
||||
$(tableEl).append(tblStr);
|
||||
});
|
||||
});
|
||||
-21
@@ -1,21 +0,0 @@
|
||||
.lesionMeasurementContainer
|
||||
width: 24%
|
||||
float: left
|
||||
height: 100%
|
||||
|
||||
#tblLesion {
|
||||
overflow: auto;
|
||||
border: solid 1px white;
|
||||
padding: 0;
|
||||
margin: 0 auto;
|
||||
font-size: 14px;
|
||||
cursor: pointer;
|
||||
color: white;
|
||||
width: 100%;
|
||||
height:100%;
|
||||
background-color: black;
|
||||
}
|
||||
|
||||
#tblLesion > tr {background-color: #545454;border-bottom: solid 1px black; width: 100%;}
|
||||
#tblLesion > tr.headRow{background-color: #424242;width: 100%; line-height: 15px;}
|
||||
#tblLesion > tr.headRow th{padding:5px;text-align: left;font-style: italic;font-size:14px;}
|
||||
@@ -1,5 +0,0 @@
|
||||
<template name="lesionTableContainer">
|
||||
<div class="lesionTableContainer">
|
||||
Current, Prior, Nadir, Baseline go here
|
||||
</div>
|
||||
</template>
|
||||
@@ -1,7 +0,0 @@
|
||||
.lesionTableContainer
|
||||
height: 25%
|
||||
max-height: 200px
|
||||
|
||||
color: #A0A0A0
|
||||
background-color: #2F2F2F
|
||||
border: 8px solid #484848
|
||||
@@ -1,4 +1,4 @@
|
||||
<template name="lesionTrackerLayout">
|
||||
<template name="layoutLesionTracker">
|
||||
<nav class="navbar navbar-default" role="navigation">
|
||||
<div class="container-fluid">
|
||||
<div class="navbar-header">
|
||||
|
||||
@@ -4,4 +4,9 @@
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
background-color: black;
|
||||
}
|
||||
|
||||
#upperHalf {
|
||||
height: 75%;
|
||||
width: 100%;
|
||||
}
|
||||
@@ -1,8 +1,10 @@
|
||||
<template name="viewer">
|
||||
<div id="viewer" class="viewer">
|
||||
{{ >lesionDialog studies=studies activeViewport=activeViewport}}
|
||||
{{ >hidingPanel studies=studies activeViewport=activeViewport}}
|
||||
{{ >viewerMain studies=studies activeViewport=activeViewport viewportRows=viewportRows viewportColumns=viewportColumns}}
|
||||
{{ >lesionMeasurementContainer studies=studies activeViewport=activeViewport}}
|
||||
<div id="upperHalf">
|
||||
{{ >hidingPanel studies=studies activeViewport=activeViewport}}
|
||||
{{ >viewerMain studies=studies activeViewport=activeViewport viewportRows=viewportRows viewportColumns=viewportColumns}}
|
||||
</div>
|
||||
{{ >lesionTable studies=studies activeViewport=activeViewport viewportRows=viewportRows viewportColumns=viewportColumns}}
|
||||
</div>
|
||||
</template>
|
||||
@@ -2,6 +2,5 @@
|
||||
<div class="viewerMain">
|
||||
{{ >toolbar toolbarOptions=toolbarOptions activeViewport=activeViewport viewportRows=viewportRows viewportColumns=viewportColumns}}
|
||||
{{ >imageViewerViewports studies=studies activeViewport=activeViewport viewportRows=viewportRows viewportColumns=viewportColumns}}
|
||||
{{ >lesionTableContainer studies=studies activeViewport=activeViewport}}
|
||||
</div>
|
||||
</template>
|
||||
@@ -72,7 +72,7 @@ Template.viewerMain.helpers({
|
||||
|
||||
toolbarOptions.buttonData = buttonData;
|
||||
toolbarOptions.includePlayClipButton = true;
|
||||
toolbarOptions.includeLayoutButton = false;
|
||||
toolbarOptions.includeLayoutButton = true;
|
||||
return toolbarOptions;
|
||||
}
|
||||
});
|
||||
@@ -1,8 +1,4 @@
|
||||
.viewerMain
|
||||
width: 64%;
|
||||
width: calc(100% - 120px)
|
||||
height: 100%
|
||||
float: left
|
||||
|
||||
#imageViewerViewports
|
||||
height: calc(75% - 30px)
|
||||
width: 100%
|
||||
float: left
|
||||
Reference in new issue
Block a user