Complete rehydration.
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commit
eaeae515a3
46 files changed
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-276
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@@ -43,45 +43,6 @@ const retrieveMeasurements = server => {
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return retrieveMeasurementFromSR(latestSeries, studies, serverUrl);
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};
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/**
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* Function to be registered into MeasurementAPI to store measurements into DICOM Structured Reports
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*
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* @param {Object} measurementData - OHIF measurementData object
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* @param {Object} filter
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* @param {serverType} server
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* @returns {Object} With message to be displayed on success
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*/
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const storeMeasurementsOld = async (measurementData, filter, server) => {
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log.info('[DICOMSR] storeMeasurements');
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if (!server || server.type !== 'dicomWeb') {
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log.error('[DICOMSR] DicomWeb server is required!');
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return Promise.reject({});
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}
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const serverUrl = server.wadoRoot;
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const firstMeasurementKey = Object.keys(measurementData)[0];
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const firstMeasurement = measurementData[firstMeasurementKey][0];
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const StudyInstanceUID =
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firstMeasurement && firstMeasurement.StudyInstanceUID;
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try {
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await stowSRFromMeasurements(measurementData, serverUrl);
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if (StudyInstanceUID) {
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studies.deleteStudyMetadataPromise(StudyInstanceUID);
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}
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return {
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message: 'Measurements saved successfully',
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};
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} catch (error) {
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log.error(
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`[DICOMSR] Error while saving the measurements: ${error.message}`
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);
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throw new Error('Error while saving the measurements.');
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}
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};
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/**
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*
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* @param {object[]} measurementData An array of measurements from the measurements service
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@@ -119,7 +80,7 @@ const generateReport = measurementData => {
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* that you wish to serialize.
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* @param {object} dataSource The dataSource that you wish to use to persist the data.
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*/
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const storeMeasurements = async (measurementData, dataSource) => {
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const storeMeasurements = async (measurementData, dataSource, onSuccess) => {
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// TODO -> Eventually use the measurements directly and not the dcmjs adapter,
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// But it is good enough for now whilst we only have cornerstone as a datasource.
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log.info('[DICOMSR] storeMeasurements');
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@@ -136,7 +97,11 @@ const storeMeasurements = async (measurementData, dataSource) => {
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await dataSource.store.dicom(naturalizedReport);
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if (StudyInstanceUID) {
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studies.deleteStudyMetadataPromise(StudyInstanceUID);
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dataSource.deleteStudyMetadataPromise(StudyInstanceUID);
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}
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if (onSuccess) {
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onSuccess(naturalizedReport);
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}
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return {
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@@ -17,6 +17,7 @@ function create({
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retrieve,
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store,
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retrieveSeriesMetadata,
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deleteStudyMetadataPromise,
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getImageIdsForDisplaySet,
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}) {
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const defaultQuery = {
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@@ -59,6 +60,7 @@ function create({
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store: store || defaultStore,
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getImageIdsForDisplaySet,
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retrieveSeriesMetadata,
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deleteStudyMetadataPromise,
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};
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}
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@@ -1,3 +1,4 @@
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import objectHash from 'object-hash';
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import hotkeys from './../utils/hotkeys';
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import log from './../log.js';
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@@ -6,6 +7,7 @@ import log from './../log.js';
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*
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* @typedef {Object} HotkeyDefinition
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* @property {String} commandName - Command to call
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* @property {Object} commandOptions - Command options
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* @property {String} label - Display name for hotkey
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* @property {String[]} keys - Keys to bind; Follows Mousetrap.js binding syntax
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*/
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@@ -18,7 +20,7 @@ export class HotkeysManager {
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if (!commandsManager) {
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log.warn(
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'HotkeysManager instantiated without a commandsManager. Hotkeys will be unable to find and run commands.'
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'[hotkeys] HotkeysManager instantiated without a commandsManager. Hotkeys will be unable to find and run commands.'
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);
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}
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@@ -141,28 +143,30 @@ export class HotkeysManager {
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* When a hotkey combination is triggered, the command name and active contexts
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* are used to locate the correct command to call.
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*
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* @param {HotkeyDefinition} commandName
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* @param {HotkeyDefinition} command
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* @param {String} extension
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* @returns {undefined}
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*/
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registerHotkeys({ commandName, keys, label } = {}, extension) {
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registerHotkeys({ commandName, commandOptions = {}, keys, label } = {}, extension) {
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if (!commandName) {
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log.warn(`No command was defined for hotkey "${keys}"`);
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log.warn(`[hotkeys] No command was defined for hotkey "${keys}"`);
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return;
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}
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const previouslyRegisteredDefinition = this.hotkeyDefinitions[commandName];
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const commandHash = objectHash({ commandName, commandOptions });
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const options = Object.keys(commandOptions).length ? JSON.stringify(commandOptions) : 'no';
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const previouslyRegisteredDefinition = this.hotkeyDefinitions[commandHash];
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if (previouslyRegisteredDefinition) {
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const previouslyRegisteredKeys = previouslyRegisteredDefinition.keys;
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this._unbindHotkeys(commandName, previouslyRegisteredKeys);
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log.info(`Unbinding ${commandName} from ${previouslyRegisteredKeys}`);
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log.info(`[hotkeys] Unbinding ${commandName} with ${options} options from ${previouslyRegisteredKeys}`);
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}
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// Set definition & bind
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this.hotkeyDefinitions[commandName] = { keys, label };
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this._bindHotkeys(commandName, keys);
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log.info(`Binding ${commandName} to ${keys}`);
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this.hotkeyDefinitions[commandHash] = { keys, label };
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this._bindHotkeys(commandName, commandOptions, keys);
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log.info(`[hotkeys] Binding ${commandName} with ${options} options to ${keys}`);
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}
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/**
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@@ -191,7 +195,7 @@ export class HotkeysManager {
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* @param {string[]} keys - One or more key combinations that should trigger command
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* @returns {undefined}
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*/
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_bindHotkeys(commandName, keys) {
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_bindHotkeys(commandName, commandOptions = {}, keys) {
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const isKeyDefined = keys === '' || keys === undefined;
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if (isKeyDefined) {
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return;
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@@ -203,7 +207,7 @@ export class HotkeysManager {
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hotkeys.bind(combinedKeys, evt => {
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evt.preventDefault();
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evt.stopPropagation();
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this._commandsManager.runCommand(commandName, { evt });
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this._commandsManager.runCommand(commandName, { evt, ...commandOptions });
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});
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}
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@@ -0,0 +1,103 @@
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import windowLevelPresets from "./windowLevelPresets";
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/*
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* Supported Keys: https://craig.is/killing/mice
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*/
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export default [
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/** Global */
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{
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commandName: 'incrementActiveViewport',
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label: 'Next Viewport',
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keys: ['right'],
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},
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{
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commandName: 'decrementActiveViewport',
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label: 'Previous Viewport',
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keys: ['left'],
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},
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/** Viewport */
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{ commandName: 'rotateViewportCW', label: 'Rotate Right', keys: ['r'] },
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{ commandName: 'rotateViewportCCW', label: 'Rotate Left', keys: ['l'] },
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{ commandName: 'invertViewport', label: 'Invert', keys: ['i'] },
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{
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commandName: 'flipViewportVertical',
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label: 'Flip Horizontally',
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keys: ['h'],
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},
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{
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commandName: 'flipViewportHorizontal',
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label: 'Flip Vertically',
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keys: ['v'],
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},
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{ commandName: 'scaleUpViewport', label: 'Zoom In', keys: ['+'] },
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{ commandName: 'scaleDownViewport', label: 'Zoom Out', keys: ['-'] },
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{ commandName: 'fitViewportToWindow', label: 'Zoom to Fit', keys: ['='] },
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{ commandName: 'resetViewport', label: 'Reset', keys: ['space'] },
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{ commandName: 'nextImage', label: 'Next Image', keys: ['down'] },
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{ commandName: 'previousImage', label: 'Previous Image', keys: ['up'] },
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{
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commandName: 'previousViewportDisplaySet',
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label: 'Previous Series',
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keys: ['pagedown'],
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},
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{
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commandName: 'nextViewportDisplaySet',
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label: 'Next Series',
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keys: ['pageup'],
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},
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/** Window level presets */
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[1],
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label: 'W/L Preset 1',
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keys: ['1'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[2],
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label: 'W/L Preset 2',
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keys: ['2'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[3],
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label: 'W/L Preset 3',
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keys: ['3'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[4],
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label: 'W/L Preset 4',
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keys: ['4'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[5],
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label: 'W/L Preset 5',
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keys: ['5'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[6],
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label: 'W/L Preset 6',
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keys: ['6'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[7],
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label: 'W/L Preset 7',
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keys: ['7'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[8],
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label: 'W/L Preset 8',
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keys: ['8'],
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},
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{
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commandName: 'setWindowLevel',
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commandOptions: windowLevelPresets[9],
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label: 'W/L Preset 9',
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keys: ['9'],
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},
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];
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@@ -0,0 +1,4 @@
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import hotkeyBindings from './hotkeyBindings';
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import windowLevelPresets from './windowLevelPresets';
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export { hotkeyBindings, windowLevelPresets };
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export default { hotkeyBindings, windowLevelPresets };
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@@ -0,0 +1,12 @@
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export default {
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1: { description: 'Soft tissue', window: '400', level: '40' },
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2: { description: 'Lung', window: '1500', level: '-600' },
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3: { description: 'Liver', window: '150', level: '90' },
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4: { description: 'Bone', window: '2500', level: '480' },
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5: { description: 'Brain', window: '80', level: '40' },
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6: { description: 'Trest', window: '1', level: '1' },
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7: { description: '', window: '', level: '' },
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8: { description: '', window: '', level: '' },
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9: { description: '', window: '', level: '' },
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10: { description: '', window: '', level: '' },
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};
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@@ -20,7 +20,8 @@ import studies from './studies/';
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import ui from './ui';
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import user from './user.js';
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import { ViewModelProvider, useViewModel } from './ViewModelContext';
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import utils, { hotkeys } from './utils/';
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import utils from './utils/';
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import defaults from './defaults';
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import {
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UIDialogService,
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@@ -37,6 +38,11 @@ import {
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import IWebApiDataSource from './DataSources/IWebApiDataSource';
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const hotkeys = {
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...utils.hotkeys,
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defaults: { hotkeyBindings: defaults.hotkeyBindings }
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};
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const OHIF = {
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MODULE_TYPES,
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//
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@@ -45,6 +51,7 @@ const OHIF = {
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HotkeysManager,
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ServicesManager,
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//
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defaults,
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utils,
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hotkeys,
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studies,
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@@ -88,6 +95,7 @@ export {
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HotkeysManager,
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ServicesManager,
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//
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defaults,
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utils,
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hotkeys,
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studies,
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@@ -15,6 +15,7 @@ describe('Top level exports', () => {
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'UIDialogService',
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'MeasurementService',
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//
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'defaults',
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'utils',
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'hotkeys',
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'studies',
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@@ -1,16 +1,7 @@
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import { windowLevelPresets } from '../../defaults';
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const defaultState = {
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windowLevelData: {
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1: { description: 'Soft tissue', window: '550', level: '40' },
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2: { description: 'Lung', window: '150', level: '-600' },
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3: { description: 'Liver', window: '150', level: '90' },
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4: { description: 'Bone', window: '2500', level: '480' },
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5: { description: 'Brain', window: '80', level: '40' },
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6: { description: 'Trest', window: '1', level: '1' },
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7: { description: '', window: '', level: '' },
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8: { description: '', window: '', level: '' },
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9: { description: '', window: '', level: '' },
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10: { description: '', window: '', level: '' },
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},
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windowLevelData: windowLevelPresets,
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generalPreferences: {
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// language: 'en-US'
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},
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@@ -72,16 +72,16 @@ const BaseImplementation = {
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study = _model.studies[_model.studies.length - 1];
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}
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// TODO: Worth identifying why this is being called many times with series
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// that are already "added"?
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const didAddSeries = study.addSeries(instances);
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study.addSeries(instances);
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if (didAddSeries) {
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this._broadcastEvent(EVENTS.INSTANCES_ADDED, {
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StudyInstanceUID,
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SeriesInstanceUID,
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});
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}
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// Broadcast an event even if we used cached data.
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// This is because the mode needs to listen to instances that are added to build up its active displaySets.
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// It will see there are cached displaySets and end early if this Series has already been fired in this
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// Mode session for some reason.
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this._broadcastEvent(EVENTS.INSTANCES_ADDED, {
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StudyInstanceUID,
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SeriesInstanceUID,
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});
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},
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addStudy(study) {
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const { StudyInstanceUID } = study;
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@@ -27,6 +27,15 @@ export default class ToolBarService {
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return this.buttons;
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}
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getActiveTools() {
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return Object.keys(this.buttons).filter(key => {
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const button = this.buttons[key];
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if (button && button.props && button.props.isActive) {
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return button;
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}
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});
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}
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setButtons(buttons) {
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this.buttons = buttons;
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this._broadcastChange(this.EVENTS.TOOL_BAR_MODIFIED, {});
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@@ -26,13 +26,21 @@ const serviceImplementation = {
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*
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* @param {ViewportDialogProps} props { content, contentProps, viewportIndex }
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*/
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function _show({ viewportIndex, type, message, actions, onSubmit }) {
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function _show({
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viewportIndex,
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type,
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message,
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actions,
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onSubmit,
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onOutsideClick,
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}) {
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return serviceImplementation._show({
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viewportIndex,
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type,
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message,
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actions,
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onSubmit,
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onOutsideClick,
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});
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}
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@@ -0,0 +1,12 @@
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import moment from 'moment';
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/**
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* Format date
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*
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* @param {string} date Date to be formatted
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* @param {string} format Desired date format
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* @returns {string} Formatted date
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*/
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export default (date, format = 'DD-MMM-YYYY') => {
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return moment(date).format(format);
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};
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@@ -15,6 +15,7 @@ import makeCancelable from './makeCancelable';
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import hotkeys from './hotkeys';
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import Queue from './Queue';
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import isDicomUid from './isDicomUid';
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import formatDate from './formatDate';
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import formatPN from './formatPN';
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import resolveObjectPath from './resolveObjectPath';
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import * as hierarchicalListUtils from './hierarchicalListUtils';
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@@ -27,6 +28,7 @@ const utils = {
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addServers,
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sortBy,
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writeScript,
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formatDate,
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formatPN,
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b64toBlob,
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StackManager,
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@@ -50,6 +52,7 @@ export {
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absoluteUrl,
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addServers,
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sortBy,
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formatDate,
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writeScript,
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b64toBlob,
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StackManager,
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