Complete rehydration.

This commit is contained in:
James A. Petts committed 2020-06-30 17:08:44 +02:00
commit eaeae515a3
46 files changed
+896 -276

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+6 -41
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@@ -43,45 +43,6 @@ const retrieveMeasurements = server => {
return retrieveMeasurementFromSR(latestSeries, studies, serverUrl);
};
/**
* Function to be registered into MeasurementAPI to store measurements into DICOM Structured Reports
*
* @param {Object} measurementData - OHIF measurementData object
* @param {Object} filter
* @param {serverType} server
* @returns {Object} With message to be displayed on success
*/
const storeMeasurementsOld = async (measurementData, filter, server) => {
log.info('[DICOMSR] storeMeasurements');
if (!server || server.type !== 'dicomWeb') {
log.error('[DICOMSR] DicomWeb server is required!');
return Promise.reject({});
}
const serverUrl = server.wadoRoot;
const firstMeasurementKey = Object.keys(measurementData)[0];
const firstMeasurement = measurementData[firstMeasurementKey][0];
const StudyInstanceUID =
firstMeasurement && firstMeasurement.StudyInstanceUID;
try {
await stowSRFromMeasurements(measurementData, serverUrl);
if (StudyInstanceUID) {
studies.deleteStudyMetadataPromise(StudyInstanceUID);
}
return {
message: 'Measurements saved successfully',
};
} catch (error) {
log.error(
`[DICOMSR] Error while saving the measurements: ${error.message}`
);
throw new Error('Error while saving the measurements.');
}
};
/**
*
* @param {object[]} measurementData An array of measurements from the measurements service
@@ -119,7 +80,7 @@ const generateReport = measurementData => {
* that you wish to serialize.
* @param {object} dataSource The dataSource that you wish to use to persist the data.
*/
const storeMeasurements = async (measurementData, dataSource) => {
const storeMeasurements = async (measurementData, dataSource, onSuccess) => {
// TODO -> Eventually use the measurements directly and not the dcmjs adapter,
// But it is good enough for now whilst we only have cornerstone as a datasource.
log.info('[DICOMSR] storeMeasurements');
@@ -136,7 +97,11 @@ const storeMeasurements = async (measurementData, dataSource) => {
await dataSource.store.dicom(naturalizedReport);
if (StudyInstanceUID) {
studies.deleteStudyMetadataPromise(StudyInstanceUID);
dataSource.deleteStudyMetadataPromise(StudyInstanceUID);
}
if (onSuccess) {
onSuccess(naturalizedReport);
}
return {
@@ -17,6 +17,7 @@ function create({
retrieve,
store,
retrieveSeriesMetadata,
deleteStudyMetadataPromise,
getImageIdsForDisplaySet,
}) {
const defaultQuery = {
@@ -59,6 +60,7 @@ function create({
store: store || defaultStore,
getImageIdsForDisplaySet,
retrieveSeriesMetadata,
deleteStudyMetadataPromise,
};
}
+15 -11
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@@ -1,3 +1,4 @@
import objectHash from 'object-hash';
import hotkeys from './../utils/hotkeys';
import log from './../log.js';
@@ -6,6 +7,7 @@ import log from './../log.js';
*
* @typedef {Object} HotkeyDefinition
* @property {String} commandName - Command to call
* @property {Object} commandOptions - Command options
* @property {String} label - Display name for hotkey
* @property {String[]} keys - Keys to bind; Follows Mousetrap.js binding syntax
*/
@@ -18,7 +20,7 @@ export class HotkeysManager {
if (!commandsManager) {
log.warn(
'HotkeysManager instantiated without a commandsManager. Hotkeys will be unable to find and run commands.'
'[hotkeys] HotkeysManager instantiated without a commandsManager. Hotkeys will be unable to find and run commands.'
);
}
@@ -141,28 +143,30 @@ export class HotkeysManager {
* When a hotkey combination is triggered, the command name and active contexts
* are used to locate the correct command to call.
*
* @param {HotkeyDefinition} commandName
* @param {HotkeyDefinition} command
* @param {String} extension
* @returns {undefined}
*/
registerHotkeys({ commandName, keys, label } = {}, extension) {
registerHotkeys({ commandName, commandOptions = {}, keys, label } = {}, extension) {
if (!commandName) {
log.warn(`No command was defined for hotkey "${keys}"`);
log.warn(`[hotkeys] No command was defined for hotkey "${keys}"`);
return;
}
const previouslyRegisteredDefinition = this.hotkeyDefinitions[commandName];
const commandHash = objectHash({ commandName, commandOptions });
const options = Object.keys(commandOptions).length ? JSON.stringify(commandOptions) : 'no';
const previouslyRegisteredDefinition = this.hotkeyDefinitions[commandHash];
if (previouslyRegisteredDefinition) {
const previouslyRegisteredKeys = previouslyRegisteredDefinition.keys;
this._unbindHotkeys(commandName, previouslyRegisteredKeys);
log.info(`Unbinding ${commandName} from ${previouslyRegisteredKeys}`);
log.info(`[hotkeys] Unbinding ${commandName} with ${options} options from ${previouslyRegisteredKeys}`);
}
// Set definition & bind
this.hotkeyDefinitions[commandName] = { keys, label };
this._bindHotkeys(commandName, keys);
log.info(`Binding ${commandName} to ${keys}`);
this.hotkeyDefinitions[commandHash] = { keys, label };
this._bindHotkeys(commandName, commandOptions, keys);
log.info(`[hotkeys] Binding ${commandName} with ${options} options to ${keys}`);
}
/**
@@ -191,7 +195,7 @@ export class HotkeysManager {
* @param {string[]} keys - One or more key combinations that should trigger command
* @returns {undefined}
*/
_bindHotkeys(commandName, keys) {
_bindHotkeys(commandName, commandOptions = {}, keys) {
const isKeyDefined = keys === '' || keys === undefined;
if (isKeyDefined) {
return;
@@ -203,7 +207,7 @@ export class HotkeysManager {
hotkeys.bind(combinedKeys, evt => {
evt.preventDefault();
evt.stopPropagation();
this._commandsManager.runCommand(commandName, { evt });
this._commandsManager.runCommand(commandName, { evt, ...commandOptions });
});
}
@@ -0,0 +1,103 @@
import windowLevelPresets from "./windowLevelPresets";
/*
* Supported Keys: https://craig.is/killing/mice
*/
export default [
/** Global */
{
commandName: 'incrementActiveViewport',
label: 'Next Viewport',
keys: ['right'],
},
{
commandName: 'decrementActiveViewport',
label: 'Previous Viewport',
keys: ['left'],
},
/** Viewport */
{ commandName: 'rotateViewportCW', label: 'Rotate Right', keys: ['r'] },
{ commandName: 'rotateViewportCCW', label: 'Rotate Left', keys: ['l'] },
{ commandName: 'invertViewport', label: 'Invert', keys: ['i'] },
{
commandName: 'flipViewportVertical',
label: 'Flip Horizontally',
keys: ['h'],
},
{
commandName: 'flipViewportHorizontal',
label: 'Flip Vertically',
keys: ['v'],
},
{ commandName: 'scaleUpViewport', label: 'Zoom In', keys: ['+'] },
{ commandName: 'scaleDownViewport', label: 'Zoom Out', keys: ['-'] },
{ commandName: 'fitViewportToWindow', label: 'Zoom to Fit', keys: ['='] },
{ commandName: 'resetViewport', label: 'Reset', keys: ['space'] },
{ commandName: 'nextImage', label: 'Next Image', keys: ['down'] },
{ commandName: 'previousImage', label: 'Previous Image', keys: ['up'] },
{
commandName: 'previousViewportDisplaySet',
label: 'Previous Series',
keys: ['pagedown'],
},
{
commandName: 'nextViewportDisplaySet',
label: 'Next Series',
keys: ['pageup'],
},
/** Window level presets */
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[1],
label: 'W/L Preset 1',
keys: ['1'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[2],
label: 'W/L Preset 2',
keys: ['2'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[3],
label: 'W/L Preset 3',
keys: ['3'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[4],
label: 'W/L Preset 4',
keys: ['4'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[5],
label: 'W/L Preset 5',
keys: ['5'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[6],
label: 'W/L Preset 6',
keys: ['6'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[7],
label: 'W/L Preset 7',
keys: ['7'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[8],
label: 'W/L Preset 8',
keys: ['8'],
},
{
commandName: 'setWindowLevel',
commandOptions: windowLevelPresets[9],
label: 'W/L Preset 9',
keys: ['9'],
},
];
+4
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@@ -0,0 +1,4 @@
import hotkeyBindings from './hotkeyBindings';
import windowLevelPresets from './windowLevelPresets';
export { hotkeyBindings, windowLevelPresets };
export default { hotkeyBindings, windowLevelPresets };
@@ -0,0 +1,12 @@
export default {
1: { description: 'Soft tissue', window: '400', level: '40' },
2: { description: 'Lung', window: '1500', level: '-600' },
3: { description: 'Liver', window: '150', level: '90' },
4: { description: 'Bone', window: '2500', level: '480' },
5: { description: 'Brain', window: '80', level: '40' },
6: { description: 'Trest', window: '1', level: '1' },
7: { description: '', window: '', level: '' },
8: { description: '', window: '', level: '' },
9: { description: '', window: '', level: '' },
10: { description: '', window: '', level: '' },
};
+9 -1
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@@ -20,7 +20,8 @@ import studies from './studies/';
import ui from './ui';
import user from './user.js';
import { ViewModelProvider, useViewModel } from './ViewModelContext';
import utils, { hotkeys } from './utils/';
import utils from './utils/';
import defaults from './defaults';
import {
UIDialogService,
@@ -37,6 +38,11 @@ import {
import IWebApiDataSource from './DataSources/IWebApiDataSource';
const hotkeys = {
...utils.hotkeys,
defaults: { hotkeyBindings: defaults.hotkeyBindings }
};
const OHIF = {
MODULE_TYPES,
//
@@ -45,6 +51,7 @@ const OHIF = {
HotkeysManager,
ServicesManager,
//
defaults,
utils,
hotkeys,
studies,
@@ -88,6 +95,7 @@ export {
HotkeysManager,
ServicesManager,
//
defaults,
utils,
hotkeys,
studies,
+1
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@@ -15,6 +15,7 @@ describe('Top level exports', () => {
'UIDialogService',
'MeasurementService',
//
'defaults',
'utils',
'hotkeys',
'studies',
@@ -1,16 +1,7 @@
import { windowLevelPresets } from '../../defaults';
const defaultState = {
windowLevelData: {
1: { description: 'Soft tissue', window: '550', level: '40' },
2: { description: 'Lung', window: '150', level: '-600' },
3: { description: 'Liver', window: '150', level: '90' },
4: { description: 'Bone', window: '2500', level: '480' },
5: { description: 'Brain', window: '80', level: '40' },
6: { description: 'Trest', window: '1', level: '1' },
7: { description: '', window: '', level: '' },
8: { description: '', window: '', level: '' },
9: { description: '', window: '', level: '' },
10: { description: '', window: '', level: '' },
},
windowLevelData: windowLevelPresets,
generalPreferences: {
// language: 'en-US'
},
@@ -72,16 +72,16 @@ const BaseImplementation = {
study = _model.studies[_model.studies.length - 1];
}
// TODO: Worth identifying why this is being called many times with series
// that are already "added"?
const didAddSeries = study.addSeries(instances);
study.addSeries(instances);
if (didAddSeries) {
this._broadcastEvent(EVENTS.INSTANCES_ADDED, {
StudyInstanceUID,
SeriesInstanceUID,
});
}
// Broadcast an event even if we used cached data.
// This is because the mode needs to listen to instances that are added to build up its active displaySets.
// It will see there are cached displaySets and end early if this Series has already been fired in this
// Mode session for some reason.
this._broadcastEvent(EVENTS.INSTANCES_ADDED, {
StudyInstanceUID,
SeriesInstanceUID,
});
},
addStudy(study) {
const { StudyInstanceUID } = study;
@@ -27,6 +27,15 @@ export default class ToolBarService {
return this.buttons;
}
getActiveTools() {
return Object.keys(this.buttons).filter(key => {
const button = this.buttons[key];
if (button && button.props && button.props.isActive) {
return button;
}
});
}
setButtons(buttons) {
this.buttons = buttons;
this._broadcastChange(this.EVENTS.TOOL_BAR_MODIFIED, {});
@@ -26,13 +26,21 @@ const serviceImplementation = {
*
* @param {ViewportDialogProps} props { content, contentProps, viewportIndex }
*/
function _show({ viewportIndex, type, message, actions, onSubmit }) {
function _show({
viewportIndex,
type,
message,
actions,
onSubmit,
onOutsideClick,
}) {
return serviceImplementation._show({
viewportIndex,
type,
message,
actions,
onSubmit,
onOutsideClick,
});
}
+12
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@@ -0,0 +1,12 @@
import moment from 'moment';
/**
* Format date
*
* @param {string} date Date to be formatted
* @param {string} format Desired date format
* @returns {string} Formatted date
*/
export default (date, format = 'DD-MMM-YYYY') => {
return moment(date).format(format);
};
+3
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@@ -15,6 +15,7 @@ import makeCancelable from './makeCancelable';
import hotkeys from './hotkeys';
import Queue from './Queue';
import isDicomUid from './isDicomUid';
import formatDate from './formatDate';
import formatPN from './formatPN';
import resolveObjectPath from './resolveObjectPath';
import * as hierarchicalListUtils from './hierarchicalListUtils';
@@ -27,6 +28,7 @@ const utils = {
addServers,
sortBy,
writeScript,
formatDate,
formatPN,
b64toBlob,
StackManager,
@@ -50,6 +52,7 @@ export {
absoluteUrl,
addServers,
sortBy,
formatDate,
writeScript,
b64toBlob,
StackManager,