feat: 🎸 DICOM SR STOW on MeasurementAPI (#954)

* feat: 🎸 DICOM SR STOW on MeasurementAPI Closes: #758 * feat: 🎸 Adding the dataExchance from DICOM SR * feat: 🎸 Fix some issues and get the retrieve measurements working * feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs) * feat: 🎸 Adding a button to start testing SATE functionality * feat: 🎸Small fixes into the code * feat: 🎸 MAke sure we get latest SR in the study, even on lazyLoad mode * Revert "feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs)" This reverts commit 4b3a1efb5810487d2319826fd59c03d779882b5e. * feat: 🎸 Make sure after sync we update the viewports and also that annotation tools are set to passive, so it can be drawn in the viewports * feat: 🎸 Remove console logs and start using OHIF.log * feat: 🎸 Refactor measurement table to use Snackbar service of messages and make sure we only show save button if server type is dicomWeb * feat: 🎸 Refactor to remove mocked wadoRoot and use server * Fix to expose error once we can't save the SR * Update DCMJS into latest dev version * Update dcmjs with latest fixes * Fix PR callouts * Logging error on MeasurementReport creation * Preventing from breaking on non supported tools and also warning that some toolType is not sopported * Small error message update * Expose better the errors and when we have unsopported tools into the measurements * Renaming variable * Expose dcmjs tool support check * Change the way we warn the unsupportedTools * Adding style to the button * Small change on button style * Fix git conflicts * Fix after merge with latest master * Fix after merge with master, btn was not clickable * Fixing callouts * Adding util functions into files and refactor with JSDocs * Refactoring code, adding some basic JSDocs * Bump dcmjs with latest version and fixes * JSDocs and small refactors * yarn lock file after dcmjs update * Remove unused parameters * Registering a plain copy of server into measurementAPI * Small refactor * Start changing from toolType to toolName * Rename a function to get instanceMetadata * Adding error if server is not DICOMWeb on retrieve * Move snackbar outside of UI component and use UINotificationService * Refactor and JSDocs * Small fixes on JSDocs (style) * Remove unused import * Improve JSDocs on MeasurementApi * Remove refactor leftover * Improve JSDocs and propTypes * JSDocs and small refactors
2019-12-11 11:14:01 -05:00
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+import { log, studies, utils } from '@ohif/core';
+import { retrieveMeasurementFromSR, stowSRFromMeasurements } from './handleStructuredReport';
+import findMostRecentStructuredReport from './utils/findMostRecentStructuredReport';
+
+/**
+ *
+ * @typedef serverType
+ * @property {string} type - type of the server
+ * @property {string} wadoRoot - server wado root url
+ *
+ */
+
+/**
+ * Function to be registered into MeasurementAPI to retrieve measurements from DICOM Structured Reports
+ *
+ * @param {serverType} server
+ * @returns {Promise} Should resolve with OHIF measurementData object
+ */
+const retrieveMeasurements = server => {
+  log.info('[DICOMSR] retrieveMeasurements');
+
+  if (!server || server.type !== 'dicomWeb') {
+    log.error('[DICOMSR] DicomWeb server is required!');
+    return Promise.reject({});
+  }
+
+  const serverUrl = server.wadoRoot;
+  const studies = utils.studyMetadataManager.all();
+  const latestSeries = findMostRecentStructuredReport(studies);
+
+  if (!latestSeries) return Promise.resolve({});
+
+  return retrieveMeasurementFromSR(latestSeries, studies, serverUrl);
+};
+
+/**
+ *  Function to be registered into MeasurementAPI to store measurements into DICOM Structured Reports
+ *
+ * @param {Object} measurementData - OHIF measurementData object
+ * @param {Object} filter
+ * @param {serverType} server
+ * @returns {Object} With message to be displayed on success
+ */
+const storeMeasurements = async (measurementData, filter, server) => {
+  log.info('[DICOMSR] storeMeasurements');
+
+  if (!server || server.type !== 'dicomWeb') {
+    log.error('[DICOMSR] DicomWeb server is required!');
+    return Promise.reject({});
+  }
+
+  const serverUrl = server.wadoRoot;
+  const firstMeasurementKey = Object.keys(measurementData)[0];
+  const firstMeasurement = measurementData[firstMeasurementKey][0];
+  const studyInstanceUid =
+    firstMeasurement && firstMeasurement.studyInstanceUid;
+
+  try {
+    await stowSRFromMeasurements(measurementData, serverUrl);
+    if (studyInstanceUid) {
+      studies.deleteStudyMetadataPromise(studyInstanceUid);
+    }
+
+    return {
+      message: 'Measurements were saved with success',
+    };
+  } catch (error) {
+    log.error(`[DICOMSR] Error while saving the measurements: ${error.message}`);
+    throw new Error('Error while saving the measurements.');
+  }
+};
+
+export { retrieveMeasurements, storeMeasurements };