fix: palette color 8 encoded 16 (#5823)

* fix: Detect 16 bit when 8 declared

* Update bun lock with dcmjs changes

* PR comments

* Update package versions

* fix: Palette color lookup table data for dcmjs parsed data

* fix: Published version should match (#5813)

* fix: Published version should match

* Move version number update to package.json

* fix: Netlify version number update

* Try updating platform app vesion too

* PR comments

---------

Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>

* Update latest cs3d

* formatting

* fix: Use 64k instead of 0 for number of entries

* fix: Revert CS3D version to see test issues

* Updated screenshots for ArrowAnnotate.spec.ts.

* Update CS3D version

* fix: Update cs3d 4.17.4

* Update bun lock

* Update bun

* Downgrade to CS3D 4.17.2 to try to release

---------

Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>

platform/app/package.json

@@ -54,7 +54,7 @@
     "@cornerstonejs/codec-libjpeg-turbo-8bit": "1.2.2",
     "@cornerstonejs/codec-openjpeg": "1.3.0",
     "@cornerstonejs/codec-openjph": "2.4.7",
-    "@cornerstonejs/dicom-image-loader": "4.15.29",
+    "@cornerstonejs/dicom-image-loader": "4.17.2",
     "@emotion/serialize": "1.3.3",
     "@ohif/core": "3.13.0-beta.22",
     "@ohif/extension-cornerstone": "3.13.0-beta.22",

platform/core/package.json

@@ -37,8 +37,8 @@
     "@cornerstonejs/codec-libjpeg-turbo-8bit": "1.2.2",
     "@cornerstonejs/codec-openjpeg": "1.3.0",
     "@cornerstonejs/codec-openjph": "2.4.7",
-    "@cornerstonejs/core": "4.15.29",
-    "@cornerstonejs/dicom-image-loader": "4.15.29",
+    "@cornerstonejs/core": "4.17.2",
+    "@cornerstonejs/dicom-image-loader": "4.17.2",
     "@ohif/ui": "3.13.0-beta.22",
     "cornerstone-math": "0.1.9",
     "dicom-parser": "1.8.21"

platform/core/src/utils/metadataProvider/fetchPaletteColorLookupTableData.js

@@ -22,8 +22,10 @@ export default function fetchPaletteColorLookupTableData(item, tag, descriptorTa
 }
 
 function _getPaletteColor(paletteColorLookupTableData, lutDescriptor) {
-  const numLutEntries = lutDescriptor[0];
-  const bits = lutDescriptor[2];
+  // DICOM standard says to use 64k instead of 0 as 64k isn't specifiable in
+  // 2 bytes.
+  const numLutEntries = lutDescriptor[0] || 65536;
+  const bitsAllocated = lutDescriptor[2];
 
   if (!paletteColorLookupTableData) {
     return undefined;
@@ -32,7 +34,11 @@ function _getPaletteColor(paletteColorLookupTableData, lutDescriptor) {
   const arrayBufferToPaletteColorLUT = arraybuffer => {
     // Handle both ArrayBuffer and TypedArray inputs
     const buffer = arraybuffer.buffer || arraybuffer;
-    const data = bits === 16 ? new Uint16Array(buffer) : new Uint8Array(buffer);
+    // See note in PS3.3 C7.6.3.1.5 around 8 bit data encoded as 16 bit
+    const data =
+      buffer.byteLength === 2 * numLutEntries || bitsAllocated > 8
+        ? new Uint16Array(buffer)
+        : new Uint8Array(buffer);
     const lut = [];
 
     for (let i = 0; i < numLutEntries; i++) {
@@ -58,6 +64,13 @@ function _getPaletteColor(paletteColorLookupTableData, lutDescriptor) {
     }
   }
 
+  const arrayPalette = Array.isArray(paletteColorLookupTableData)
+    ? paletteColorLookupTableData[0]
+    : paletteColorLookupTableData;
+  if (arrayPalette instanceof ArrayBuffer) {
+    return (paletteColorLookupTableData.palette = arrayBufferToPaletteColorLUT(arrayPalette));
+  }
+
   if (paletteColorLookupTableData.retrieveBulkData) {
     return paletteColorLookupTableData
       .retrieveBulkData()