chore(release): publish [skip ci]

- @ohif/extension-vtk@1.12.28
 - @ohif/core@2.16.23
 - @ohif/ui@1.10.10
 - @ohif/viewer@4.12.31

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.12.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.12...@ohif/extension-cornerstone@2.12.13) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.11...@ohif/extension-cornerstone@2.12.12) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [2.12.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.10...@ohif/extension-cornerstone@2.12.11) (2022-06-14)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "2.12.11",
+  "version": "2.12.13",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",

extensions/cornerstone/src/OHIFCornerstoneViewport.js

@@ -237,7 +237,7 @@ class OHIFCornerstoneViewport extends Component {
       }
     };
 
-    const warningsOverlay = props => {
+    const overlay = props => {
       const displaySet = this.props.viewportData.displaySet;
       let filteredSRLabels;
       if (displaySet.SRLabels && displaySet.SRLabels.length !== 0) {
@@ -264,7 +264,7 @@ class OHIFCornerstoneViewport extends Component {
           imageIdIndex={currentImageIdIndex}
           onNewImageDebounced={newImageHandler}
           onNewImageDebounceTime={300}
-          viewportOverlayComponent={warningsOverlay}
+          viewportOverlayComponent={overlay}
           stackPrefetch={this.props.stackPrefetch}
           isStackPrefetchEnabled={this.props.isStackPrefetchEnabled}
           // ~~ Connected (From REDUX)

extensions/cornerstone/src/components/OHIFCornerstoneViewportOverlay.css

@@ -35,7 +35,7 @@
 }
 .OHIFCornerstoneViewportOverlay .bottom-left3 {
   bottom: 110px;
-  left: 100px;
+  left: -20px;
 }
 .OHIFCornerstoneViewportOverlay .bottom-right {
   bottom: 20px;

extensions/cornerstone/src/components/OHIFCornerstoneViewportOverlay.js

@@ -18,19 +18,13 @@ import { Tooltip } from '@ohif/ui/src/components/tooltip';
 import { OverlayTrigger } from '@ohif/ui/src/components/overlayTrigger';
 
 const Button = styled.button`
-  background-color: #3f51b5;
   color: white;
-  padding: 5px 15px;
+  padding: 2px 7px;
   border-radius: 10px;
   outline: 0;
-  text-transform: lowercase;
+  text-transform: none;
-  margin: 5px 5px;
+  margin: 2px 2px;
   cursor: pointer;
-  box-shadow: 0px 2px 2px lightgray;
-  transition: ease background-color 250ms;
-  &:hover {
-    background-color: #283593;
-  }
   &:disabled {
     cursor: default;
     opacity: 0.9;
@@ -51,7 +45,7 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
     imageId: PropTypes.string.isRequired,
     imageIndex: PropTypes.number.isRequired,
     stackSize: PropTypes.number.isRequired,
-    inconsistencyWarnings: PropTypes.array.isRequired,
+    inconsistencyWarnings: PropTypes.array,
     SRLabels: PropTypes.array,
   };
 
@@ -152,34 +146,48 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
 
     const SRLabelsOn = SRLabels && SRLabels.length !== 0 ? true : false;
 
+    /**/
+
     const getSRLabelsContent = SRLabels => {
       if (Array.isArray(SRLabels)) {
         const listedSRLabels = SRLabels.map((SRLabel, index) => {
+          const color = SRLabel.labels.color;
           return (
-            <OverlayTrigger
+            SRLabel.labels.visible && (
-              key={index}
+              <OverlayTrigger
-              placement="top"
+                key={index}
-              overlay={
+                placement="top"
-                <Tooltip
+                overlay={
-                  placement="top"
+                  <Tooltip
-                  className="in tooltip-warning"
+                    placement="top"
-                  id="tooltip-top"
+                    className="in tooltip-warning"
-                >
+                    id="tooltip-top"
-                  <div className="warningTitle"> Designators </div>
+                  >
-                  <div className="warningContent">
+                    <div className="warningTitle">
-                    {SRLabel.labels.labelCodingSchemeDesignator +
+                      {' '}
-                      ' : ' +
+                      Coding scheme designators{' '}
-                      SRLabel.labels.valueCodingSchemeDesignator}
+                    </div>
-                  </div>
+                    <div className="warningContent">
-                </Tooltip>
+                      {SRLabel.labels.labelCodingSchemeDesignator +
-              }
+                        ' : ' +
-            >
+                        SRLabel.labels.valueCodingSchemeDesignator}
-              <div style={{ display: 'inline-block' }}>
+                    </div>
-                <Button disabled={true} key={index}>
+                  </Tooltip>
-                  {SRLabel.labels.label + ' : ' + SRLabel.labels.value}
+                }
-                </Button>
+              >
-              </div>
+                <div style={{ display: 'inline-block' }}>
-            </OverlayTrigger>
+                  <Button
+                    style={{
+                      backgroundColor: color,
+                    }}
+                    disabled={true}
+                    key={index}
+                  >
+                    {SRLabel.labels.label + ' : ' + SRLabel.labels.value}
+                  </Button>
+                </div>
+              </OverlayTrigger>
+            )
           );
         });
 

extensions/debugging/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.2...@ohif/extension-debugging@0.3.3) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-debugging
+
+
+
+
+
 ## [0.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.1...@ohif/extension-debugging@0.3.2) (2022-03-10)
 
 **Note:** Version bump only for package @ohif/extension-debugging

extensions/debugging/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-debugging",
-  "version": "0.3.2",
+  "version": "0.3.3",
   "description": "OHIF extension for debugging.",
   "author": "OHIF",
   "license": "MIT",

extensions/debugging/src/DebugReportModal.js

@@ -89,10 +89,10 @@ const DubugReportModal = ({
 
     Object.keys(viewportSpecificData).forEach(viewportIndex => {
       const displaySet = viewportSpecificData[viewportIndex];
-      const [
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
-        referencedDisplaySetsRef,
+        displaySet,
-        referencedDisplaySetsCount,
+        'SEG'
-      ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'SEG');
+      );
 
       const [row, column] = _viewportIndexToViewportPosition(
         viewportIndex,
@@ -106,10 +106,27 @@ const DubugReportModal = ({
 
     Object.keys(viewportSpecificData).forEach(viewportIndex => {
       const displaySet = viewportSpecificData[viewportIndex];
-      const [
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
-        referencedDisplaySetsRef,
+        displaySet,
-        referencedDisplaySetsCount,
+        'RTSTRUCT'
-      ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'RTSTRUCT');
+      );
+
+      const [row, column] = _viewportIndexToViewportPosition(
+        viewportIndex,
+        numColumns
+      );
+
+      body += `[${row},${column}]\t${referencedDisplaySetsRef}\n`;
+    });
+
+    body += '== ReferencedSRSeriesInstanceUIDs ==\n';
+
+    Object.keys(viewportSpecificData).forEach(viewportIndex => {
+      const displaySet = viewportSpecificData[viewportIndex];
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
+        displaySet,
+        'SR'
+      );
 
       const [row, column] = _viewportIndexToViewportPosition(
         viewportIndex,
@@ -261,11 +278,15 @@ const getLayout = viewports => {
       <tr>
         <th>ReferencedSEGSeriesInstanceUIDs</th>
       </tr>
-      {getReferencedSEGSeriesInstanceUIDsPerRow(viewports)}
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'SEG')}
       <tr>
         <th>ReferencedRTSTRUCTSeriesInstanceUIDs</th>
       </tr>
-      {getReferencedRTSTRUCTSeriesInstanceUIDsPerRow(viewports)}
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'RTSTRUCT')}
+      <tr>
+        <th>ReferencedSRSeriesInstanceUIDs</th>
+      </tr>
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'SR')}
     </React.Fragment>
   );
 };
@@ -351,7 +372,7 @@ const _getReferencedSeriesInstanceUIDsString = (displaySet, Modality) => {
   return [referencedDisplaySetsRef, referencedDisplaySetsCount];
 };
 
-const getReferencedSEGSeriesInstanceUIDsPerRow = viewports => {
+const getReferencedSeriesInstanceUIDsPerRow = (viewports, Modality) => {
   const { viewportSpecificData, numColumns } = viewports;
 
   // NOTE viewportSpecificData is actually an object with numerical keys.
@@ -360,43 +381,7 @@ const getReferencedSEGSeriesInstanceUIDsPerRow = viewports => {
     const [
       referencedDisplaySetsRef,
       referencedDisplaySetsCount,
-    ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'SEG');
+    ] = _getReferencedSeriesInstanceUIDsString(displaySet, Modality);
-
-    const [row, column] = _viewportIndexToViewportPosition(
-      viewportIndex,
-      numColumns
-    );
-
-    if (referencedDisplaySetsCount > 1) {
-      return (
-        <tr>
-          <td>{`[${row},${column}]`}</td>
-          <td className="debug-overflowText-border">
-            {referencedDisplaySetsRef}
-          </td>
-        </tr>
-      );
-    } else {
-      return (
-        <tr>
-          <td>{`[${row},${column}]`}</td>
-          <td className="debug-overflowText">{referencedDisplaySetsRef}</td>
-        </tr>
-      );
-    }
-  });
-};
-
-const getReferencedRTSTRUCTSeriesInstanceUIDsPerRow = viewports => {
-  const { viewportSpecificData, numColumns } = viewports;
-
-  // NOTE viewportSpecificData is actually an object with numerical keys.
-  return Object.keys(viewportSpecificData).map(viewportIndex => {
-    const displaySet = viewportSpecificData[viewportIndex];
-    const [
-      referencedDisplaySetsRef,
-      referencedDisplaySetsCount,
-    ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'RTSTRUCT');
 
     const [row, column] = _viewportIndexToViewportPosition(
       viewportIndex,

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.3.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.21...@ohif/extension-dicom-html@1.3.22) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [1.3.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.20...@ohif/extension-dicom-html@1.3.21) (2022-04-05)
 
 **Note:** Version bump only for package @ohif/extension-dicom-html

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "1.3.21",
+  "version": "1.3.22",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js

@@ -1,4 +1,4 @@
-import { MODULE_TYPES, utils } from '@ohif/core';
+import { MODULE_TYPES, utils, metadata } from '@ohif/core';
 
 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
@@ -10,7 +10,7 @@ const SOP_CLASS_UIDS = {
   MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
   CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
   X_RAY_RADIATION_DOSE_SR: '1.2.840.10008.5.1.4.1.1.88.67',
-  ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71'
+  ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71',
 };
 
 const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
@@ -32,7 +32,7 @@ const OHIFDicomHtmlSopClassHandler = {
       SeriesTime,
     } = metadata;
 
-    return {
+    const srDisplaySet = {
       plugin: 'html',
       Modality: 'SR',
       displaySetInstanceUID: utils.guid(),
@@ -49,7 +49,15 @@ const OHIFDicomHtmlSopClassHandler = {
       authorizationHeaders,
       sopClassUids: sopClassUIDs,
       images: series._instances,
+      isDerived: true,
+      referencedDisplaySets: [],
     };
+
+    srDisplaySet.getSourceDisplaySet = function() {
+      return srDisplaySet.referencedDisplaySets;
+    };
+
+    return srDisplaySet;
   },
 };
 

extensions/lesion-tracker/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.1...@ohif/extension-lesion-tracker@0.2.2) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-lesion-tracker
+
+
+
+
+
 ## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.0...@ohif/extension-lesion-tracker@0.2.1) (2020-09-03)
 
 **Note:** Version bump only for package @ohif/extension-lesion-tracker

extensions/lesion-tracker/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-lesion-tracker",
-  "version": "0.2.1",
+  "version": "0.2.2",
   "description": "OHIF extension for Lesion Tracker",
   "author": "OHIF",
   "license": "MIT",

extensions/lesion-tracker/src/components/MeasurementComparisonTable.js

@@ -76,13 +76,13 @@ const additionalFindings = [
 
 const currentCollections = [
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     maxMeasurements: 3,
     groupName: 'Measurements',
     measurements: measurements,
   },
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     groupName: 'Additional Findings',
     measurements: additionalFindings,
   },
@@ -90,13 +90,13 @@ const currentCollections = [
 
 const comparisonColletions = [
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     maxMeasurements: 3,
     groupName: 'Measurements',
     measurements: measurements,
   },
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     groupName: 'Additional Findings',
     measurements: additionalFindings,
   },
@@ -128,7 +128,7 @@ const comparisonTimepoints = [
   {
     key: 'Comparison',
     date: '15-Jun-18',
-  }
+  },
 ];
 
 const MeasurementComparisonTable = () => {
@@ -138,8 +138,8 @@ const MeasurementComparisonTable = () => {
         timepoints={comparisonTimepoints}
         overallWarnings={overallWarnings}
         measurementCollection={comparisonCollections}
-        onRelabelClick={() => { }}
+        onRelabelClick={() => {}}
-        onEditDescriptionClick={() => { }}
+        onEditDescriptionClick={() => {}}
       />
       <div className="generate-report">
         <button className="btn btn-primary">Generate Report</button>

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,38 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.12.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.27...@ohif/extension-vtk@1.12.28) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.26...@ohif/extension-vtk@1.12.27) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.25...@ohif/extension-vtk@1.12.26) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.24...@ohif/extension-vtk@1.12.25) (2022-06-28)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.12.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.23...@ohif/extension-vtk@1.12.24) (2022-06-14)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.12.24",
+  "version": "1.12.28",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -53,8 +53,8 @@
     "react-vtkjs-viewport": "^0.14.4"
   },
   "devDependencies": {
-    "@ohif/core": "^2.16.19",
+    "@ohif/core": "^2.16.23",
-    "@ohif/ui": "^1.10.8",
+    "@ohif/ui": "^1.10.10",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
     "dicom-parser": "^1.8.11",

platform/core/CHANGELOG.md

@@ -3,6 +3,41 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.16.23](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.22...@ohif/core@2.16.23) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.22](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.21...@ohif/core@2.16.22) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.21](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.20...@ohif/core@2.16.21) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.20](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.19...@ohif/core@2.16.20) (2022-06-28)
+
+
+### Bug Fixes
+
+* Re IDC2797, fix double parsing of SR qualitative annotations ([#2830](https://github.com/OHIF/Viewers/issues/2830)) ([9f813e0](https://github.com/OHIF/Viewers/commit/9f813e0ea08f0aada8efab9ef6228ad90dd1758d))
+
+
+
+
+
 ## [2.16.19](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.18...@ohif/core@2.16.19) (2022-06-14)
 
 **Note:** Version bump only for package @ohif/core

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "2.16.19",
+  "version": "2.16.23",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",

platform/core/src/DICOMSR/SCOORD3D/parseSCOORD3D.js

@@ -8,6 +8,17 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
   const { MeasurementService } = servicesManager.services;
 
   const srDisplaySets = displaySets.filter(ds => ds.Modality === 'SR');
+  const imageDisplaySets = displaySets.filter(
+    ds =>
+      ds.Modality !== 'SR' &&
+      ds.Modality !== 'SEG' &&
+      ds.Modality !== 'RTSTRUCT' &&
+      ds.Modality !== 'RTDOSE'
+  );
+
+  imageDisplaySets.forEach(imageDisplaySet => {
+    imageDisplaySet.SRLabels = [];
+  });
 
   srDisplaySets.forEach(srDisplaySet => {
     const firstInstance = srDisplaySet.metadata;
@@ -28,13 +39,6 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
     srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
     srDisplaySet.isLoaded = true;
 
-    const imageDisplaySets = displaySets.filter(
-      ds =>
-        ds.Modality !== 'SR' &&
-        ds.Modality !== 'SEG' &&
-        ds.Modality !== 'RTSTRUCT' &&
-        ds.Modality !== 'RTDOSE'
-    );
     imageDisplaySets.forEach(imageDisplaySet => {
       // Check currently added displaySets and add measurements if the sources exist.
       checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, imageDisplaySet);
@@ -127,11 +131,10 @@ const checkIfCanAddMeasurementsToDisplaySet = (
 
   const imageIds = images.map(i => i.getImageId());
   const SOPInstanceUIDs = images.map(i => i.SOPInstanceUID);
-  imageDisplaySet.SRLabels = [];
+  const colors = new Map();
   measurements.forEach(measurement => {
     const { coords } = measurement;
-
+    coords.forEach((coord, index) => {
-    coords.forEach(coord => {
       if (coord.ReferencedSOPSequence !== undefined) {
         const imageIndex = SOPInstanceUIDs.findIndex(
           SOPInstanceUID =>
@@ -139,29 +142,50 @@ const checkIfCanAddMeasurementsToDisplaySet = (
             coord.ReferencedSOPSequence.ReferencedSOPInstanceUID
         );
         if (imageIndex > -1) {
+          if (!srDisplaySet.referencedDisplaySets.includes(imageDisplaySet)) {
+            srDisplaySet.referencedDisplaySets.push(imageDisplaySet);
+          }
+
           const imageId = imageIds[imageIndex];
           const imageMetadata = images[imageIndex].getData().metadata;
 
-          const coords = measurement.coords;
+          if (coord.GraphicType === 'TEXT') {
-          for (let i = 0; i < coords.length; i++) {
+            const key =
-            const coord = coords[i];
+              measurement.labels[index].label + measurement.labels[index].value;
-            if (coord.GraphicType !== 'TEXT') {
+            let color = colors.get(key);
-              continue;
+            if (!color) {
+              // random dark color
+              color =
+                'hsla(' + Math.floor(Math.random() * 360) + ', 70%, 30%, 1)';
+              colors.set(key, color);
             }
 
+            measurement.labels[index].color = color;
+            measurement.isSRText = true;
+            measurement.labels[index].visible = true;
+
             imageDisplaySet.SRLabels.push({
               ReferencedSOPInstanceUID:
                 coord.ReferencedSOPSequence.ReferencedSOPInstanceUID,
-              labels: measurement.labels[i],
+              labels: measurement.labels[index],
             });
-          }
 
-          addMeasurement(
+            if (index === 0) {
-            measurement,
+              addMeasurement(
-            imageId,
+                measurement,
-            imageMetadata,
+                imageId,
-            imageDisplaySet.displaySetInstanceUID
+                imageMetadata,
-          );
+                imageDisplaySet.displaySetInstanceUID
+              );
+            }
+          } else {
+            addMeasurement(
+              measurement,
+              imageId,
+              imageMetadata,
+              imageDisplaySet.displaySetInstanceUID
+            );
+          }
         }
       }
     });

platform/core/src/DICOMSR/SCOORD3D/utils/addMeasurement.js

@@ -26,8 +26,10 @@ export default function addMeasurement(
 
   const measurementData = {
     TrackingUniqueIdentifier: measurement.TrackingUniqueIdentifier,
+    TrackingIdentifier: measurement.TrackingIdentifier,
     renderableData: {},
     labels: measurement.labels,
+    isSRText: measurement.isSRText,
   };
 
   measurement.coords.forEach(coord => {

platform/core/src/classes/metadata/StudyMetadata.js

@@ -350,6 +350,19 @@ class StudyMetadata extends Metadata {
               referencedSeriesInstanceUID
             );
           } else {
+            const filteredReferencedDisplaySets = displaySet.referencedDisplaySets.filter(
+              referencedDisplaySet =>
+                referencedDisplaySet.SeriesInstanceUID ===
+                referencedSeriesInstanceUID
+            );
+
+            if (
+              filteredReferencedDisplaySets &&
+              filteredReferencedDisplaySets.length !== 0
+            ) {
+              return true;
+            }
+
             return false;
           }
         }

platform/core/src/measurements/tools/dicomSRDisplayTool.js

@@ -6,7 +6,8 @@ export const dicomSRDisplayTool = {
   options: {
     measurementTable: {
       displayFunction: data => {
-        return `(SR) ${data.lesionNamingNumber ||
+        return `(SR) ${data.TrackingIdentifier ||
+          data.lesionNamingNumber ||
           data.measurementNumber ||
           data.text ||
           ''}`;

platform/ui/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.10.10](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.9...@ohif/ui@1.10.10) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [1.10.9](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.8...@ohif/ui@1.10.9) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
 ## [1.10.8](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.7...@ohif/ui@1.10.8) (2022-04-06)
 
 **Note:** Version bump only for package @ohif/ui

platform/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/ui",
-  "version": "1.10.8",
+  "version": "1.10.10",
   "description": "A set of React components for Medical Imaging Viewers",
   "author": "OHIF Contributors",
   "license": "MIT",

platform/ui/src/components/measurementTable/MeasurementTableItem.js

@@ -9,6 +9,14 @@ import { TableListItem } from './../tableList/TableListItem.js';
 
 import './MeasurementTableItem.styl';
 
+const ColoredCircle = ({ color }) => {
+  return <div className="item-color" style={{ backgroundColor: color }}></div>;
+};
+
+ColoredCircle.propTypes = {
+  color: PropTypes.string.isRequired,
+};
+
 class MeasurementTableItem extends Component {
   static propTypes = {
     measurementData: PropTypes.object.isRequired,
@@ -21,6 +29,14 @@ class MeasurementTableItem extends Component {
     t: PropTypes.func,
   };
 
+  constructor(props) {
+    super(props);
+    this.state = {
+      collapsed: true,
+      visible: true,
+    };
+  }
+
   render() {
     const {
       warningTitle = '',
@@ -93,27 +109,115 @@ class MeasurementTableItem extends Component {
       actionButtons.push(deleteButton);
     }
 
-    return (
+    if (
-      <TableListItem
+      this.props.measurementData.isSRText === true &&
-        itemKey={this.props.measurementData.measurementNumber}
+      this.props.measurementData.labels &&
-        itemClass={`measurementItem ${this.props.itemClass} ${hasWarningClass}`}
+      this.props.measurementData.labels.length > 0
-        itemIndex={this.props.itemIndex}
+    ) {
-        onItemClick={this.onItemClick}
+      return (
-      >
+        <React.Fragment>
-        <div>
+          <TableListItem
-          <div className="measurementLocation">
+            key={this.props.measurementData.measurementNumber}
-            {this.props.t(this.props.measurementData.label, {
+            itemKey={this.props.measurementData.measurementNumber}
-              keySeparator: '>',
+            itemClass={`measurementItem ${this.props.itemClass} ${hasWarningClass}`}
-              nsSeparator: '|',
+            itemIndex={this.props.itemIndex}
+            onItemClick={this.onItemClick}
+          >
+            <div>
+              <div className="measurementLocation">
+                {this.props.t(this.props.measurementData.label, {
+                  keySeparator: '>',
+                  nsSeparator: '|',
+                })}
+              </div>
+            </div>
+            <div className="icons">
+              <div className="displayTexts">{this.getDataDisplayText()}</div>
+              <Icon
+                className={`eye-icon`}
+                name={this.state.visible ? 'eye' : 'eye-closed'}
+                width="20px"
+                height="20px"
+                onClick={() => {
+                  this.props.measurementData.labels.forEach(label => {
+                    label.visible = !this.state.visible;
+                  });
+
+                  this.setState({
+                    visible: !this.state.visible,
+                  });
+                }}
+              />
+              <Icon
+                className={`angle-double-${
+                  this.state.collapsed ? 'down' : 'up'
+                }`}
+                name={`angle-double-${this.state.collapsed ? 'down' : 'up'}`}
+                width="20px"
+                height="20px"
+                onClick={() => {
+                  this.setState({
+                    collapsed: !this.state.collapsed,
+                  });
+                }}
+              />
+            </div>
+          </TableListItem>
+          {this.state.collapsed &&
+            this.props.measurementData.labels.map((SRLabel, index) => {
+              return (
+                <TableListItem
+                  key={index}
+                  itemKey={index}
+                  itemMeta={<ColoredCircle color={SRLabel.color} />}
+                  itemMetaClass="item-color-section"
+                  onItemClick={this.onItemClick}
+                >
+                  <div>
+                    <div className="icons">
+                      <span style={{ width: '90px' }}>
+                        {SRLabel.label + ' : ' + SRLabel.value}
+                      </span>
+                      <Icon
+                        className={`eye-icon`}
+                        name={SRLabel.visible ? 'eye' : 'eye-closed'}
+                        width="20px"
+                        height="20px"
+                        onClick={() => {
+                          SRLabel.visible = !SRLabel.visible;
+                        }}
+                      />
+                    </div>
+                  </div>
+                </TableListItem>
+              );
             })}
+        </React.Fragment>
+      );
+    } else {
+      return (
+        <TableListItem
+          key={this.props.measurementData.measurementNumber}
+          itemKey={this.props.measurementData.measurementNumber}
+          itemClass={`measurementItem ${this.props.itemClass} ${hasWarningClass}`}
+          itemIndex={this.props.itemIndex}
+          onItemClick={this.onItemClick}
+        >
+          <div>
+            <div className="measurementLocation">
+              {this.props.t(this.props.measurementData.label, {
+                keySeparator: '>',
+                nsSeparator: '|',
+              })}
+            </div>
+            <div className="displayTexts">{this.getDataDisplayText()}</div>
+            {!this.props.measurementData.isReadOnly && (
+              <div className="rowActions">{actionButtons}</div>
+            )}
           </div>
-          <div className="displayTexts">{this.getDataDisplayText()}</div>
+        </TableListItem>
-          {!this.props.measurementData.isReadOnly && (
+      );
-            <div className="rowActions">{actionButtons}</div>
+    }
-          )}
-        </div>
-      </TableListItem>
-    );
   };
 
   onItemClick = event => {

platform/ui/src/components/measurementTable/MeasurementTableItem.styl

@@ -1,4 +1,16 @@
 .measurementItem
+  .item-color-section
+    display: flex;
+    justify-content: center;
+    align-items: center;
+    flex-direction: column;
+
+ .item-color
+    margin-top: 8px;
+    border-radius: 100%;
+    width: 20px;
+    height: 20px;
+
   .rowActions
       margin-left: -1px;
       background-color: var(--ui-gray-darker)
@@ -63,3 +75,16 @@
         width: 22px;
         height: 20px;
         pointer-events: inherit;
+
+.icons
+  display: flex;
+  align-items: center;
+  border-radius: 5px;
+
+.icons .eye-icon
+  margin-left: 100px;
+  margin-right: -5px;
+.icons .angle-double-down
+.icons .angle-double-up
+  margin-left: 15px;
+  margin-right: -5px;

platform/ui/src/components/tableList/TableList.styl

@@ -18,6 +18,7 @@ $headerRowHeight = 63px
 
     .tableListHeaderTitle
       color: var(--text-secondary-color)
+      max-width: 230px
       font-size: 22px
       font-weight: 300
       line-height: $headerRowHeight

platform/ui/src/components/tableList/TableListItem.js

@@ -12,16 +12,13 @@ export class TableListItem extends Component {
     itemIndex: PropTypes.number,
     itemMeta: PropTypes.node,
     itemMetaClass: PropTypes.string,
-    itemKey: PropTypes.oneOfType([
+    itemKey: PropTypes.oneOfType([PropTypes.string, PropTypes.number]),
-      PropTypes.string,
-      PropTypes.number,
-    ]),
     onItemClick: PropTypes.func.isRequired,
   };
 
   static defaultProps = {
     itemMeta: null,
-    itemMetaClass: ''
+    itemMetaClass: '',
   };
 
   render() {

platform/viewer/CHANGELOG.md

@@ -3,6 +3,38 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.12.31](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.30...@ohif/viewer@4.12.31) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.30](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.29...@ohif/viewer@4.12.30) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.29](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.28...@ohif/viewer@4.12.29) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.28](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.27...@ohif/viewer@4.12.28) (2022-06-28)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.12.27](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.26...@ohif/viewer@4.12.27) (2022-06-14)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.12.27",
+  "version": "4.12.31",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -47,18 +47,18 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.16.19",
+    "@ohif/core": "^2.16.23",
-    "@ohif/extension-cornerstone": "^2.12.11",
+    "@ohif/extension-cornerstone": "^2.12.13",
-    "@ohif/extension-debugging": "^0.3.2",
+    "@ohif/extension-debugging": "^0.3.3",
-    "@ohif/extension-dicom-html": "^1.3.21",
+    "@ohif/extension-dicom-html": "^1.3.22",
     "@ohif/extension-dicom-microscopy": "^0.52.0",
     "@ohif/extension-dicom-pdf": "^1.1.2",
     "@ohif/extension-dicom-rt": "^0.7.11",
     "@ohif/extension-dicom-segmentation": "^0.7.11",
-    "@ohif/extension-lesion-tracker": "^0.2.1",
+    "@ohif/extension-lesion-tracker": "^0.2.2",
-    "@ohif/extension-vtk": "^1.12.24",
+    "@ohif/extension-vtk": "^1.12.28",
     "@ohif/i18n": "^0.53.0",
-    "@ohif/ui": "^1.10.8",
+    "@ohif/ui": "^1.10.10",
     "@tanem/react-nprogress": "^1.1.25",
     "classnames": "^2.2.6",
     "core-js": "^3.2.1",

platform/viewer/src/appExtensions/MeasurementsPanel/ConnectedMeasurementTable.js

@@ -122,6 +122,7 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
 
   Object.keys(toolCollections).forEach(toolId => {
     const toolMeasurements = toolCollections[toolId];
+
     const tool = tools.find(tool => tool.id === toolId);
     const { displayFunction } = tool.options.measurementTable;
 
@@ -131,12 +132,13 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
     Object.keys(groupedMeasurements).forEach(groupedMeasurementsIndex => {
       const measurementNumberList =
         groupedMeasurements[groupedMeasurementsIndex];
+
       const measurementData = measurementNumberList[0];
       const {
         measurementNumber,
         lesionNamingNumber,
         toolType,
-        isReadOnly
+        isReadOnly,
       } = measurementData;
       const measurementId = measurementData._id;
 
@@ -150,6 +152,8 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
       const tableMeasurement = {
         itemNumber: lesionNamingNumber,
         label: getMeasurementText(measurementData),
+        labels: measurementData.labels,
+        isSRText: measurementData.isSRText,
         measurementId,
         measurementNumber,
         lesionNamingNumber,

platform/viewer/src/connectedComponents/ConnectedStudyBrowser.js

@@ -48,7 +48,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
             );
             document.dispatchEvent(selectionFired);
           });
-        } else {
+        } else if (Modality !== 'SR') {
           displaySet = displaySet.getSourceDisplaySet(ownProps.studyMetadata);
         }
 

platform/viewer/src/connectedComponents/Viewer.js

@@ -262,7 +262,11 @@ class Viewer extends Component {
       const { currentTimepointId } = this;
 
       this.timepointApi.retrieveTimepoints({ PatientID });
-      this.measurementApi.retrieveMeasurements(PatientID, [currentTimepointId]);
+      this.measurementApi
+        .retrieveMeasurements(PatientID, [currentTimepointId])
+        .then(() => {
+          this._updateThumbnails();
+        });
     }
   }
 
@@ -608,9 +612,30 @@ const _isDisplaySetActive = function(
   if (
     displaySet.Modality !== 'SEG' &&
     displaySet.Modality !== 'RTSTRUCT' &&
-    displaySet.Modality !== 'RTDOSE'
+    displaySet.Modality !== 'RTDOSE' &&
+    displaySet.Modality !== 'SR'
   ) {
     active = activeDisplaySetInstanceUID === displaySetInstanceUID;
+  } else if (displaySet.Modality === 'SR') {
+    active = activeDisplaySetInstanceUID === displaySetInstanceUID;
+
+    if (!active && displaySet.getSourceDisplaySet) {
+      const referencedDisplaySet = displaySet.getSourceDisplaySet(
+        studies,
+        false
+      );
+      if (referencedDisplaySet && referencedDisplaySet.length !== 0) {
+        for (let i = 0; i < referencedDisplaySet.length; i++) {
+          if (
+            referencedDisplaySet[i].displaySetInstanceUID ===
+            activeDisplaySetInstanceUID
+          ) {
+            active = true;
+            break;
+          }
+        }
+      }
+    }
   } else if (displaySet.getSourceDisplaySet) {
     if (displaySet.Modality === 'SEG') {
       const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
@@ -661,10 +686,9 @@ const _mapStudiesToThumbnails = function(studies, activeDisplaySetInstanceUID) {
       let altImageText;
 
       if (displaySet.Modality && displaySet.Modality === 'SEG') {
-        // TODO: We want to replace this with a thumbnail showing
-        // the segmentation map on the image, but this is easier
-        // and better than what we have right now.
         altImageText = 'SEG';
+      } else if (displaySet.Modality && displaySet.Modality === 'SR') {
+        altImageText = 'SR';
       } else if (displaySet.images && displaySet.images.length) {
         const imageIndex = Math.floor(displaySet.images.length / 2);
         imageId = displaySet.images[imageIndex].getImageId();

platform/viewer/src/connectedComponents/ViewerMain.js

@@ -173,7 +173,7 @@ class ViewerMain extends Component {
           );
           document.dispatchEvent(selectionFired);
         });
-      } else {
+      } else if (Modality !== 'SR') {
         displaySet = displaySet.getSourceDisplaySet(this.props.studies);
       }