ohif-viewer/platform/viewer
Erik Ziegler bd1c38c00c
feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: cs3d tools and toolGroups (#20)

* add more tools to work with cs3d mode

* fix hotkeys

* add stack manager usage for stach viewports

* add image scrollbar

* wip viewport overlay

* fix toAnnotation schema for tools

* fix the unnecessary size change that triggered resize

* hanging protocol improvement to allow unmatched errors

* study description matching for hanging protocol

* fix the displaysetOptions to work

* fix handle the active tool when a new viewport is added

* fix separate toolGroups for mode

* apply review comments

* apply review comments

* yarn lock

* feat: overlay component (#21)

* fix default displayset options

* add viewport overlay

* apply review comments

* feat: loading and orientation indicators (#22)

* add loading indicator

* add orientation marker initial work

* apply review comments

* fix: orientation markers (#23)

* finished the orientation markers

* fix various broken cypress tests

* apply review comments

* update yarn lock

* feat: re-working measurement tracking mode with cornerstone3d (#2805)

* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: Add Measurement tracking mode with cs3D (#2789)

* feat: first render for cornerstone3d tracked viewport

* make tool active work

* wip for SR extension

* renamed dicom sr to cornerstone dicom sr

* remove cornerstone from dicom pdf and video

* move dicom sr logic to sr extension

* feat: Add hydration for the length tool

* fix SR display tool for length using cs3d

* fix default config

* fix: various bugs with sr viewport and tracking

* fix promptying to continue tracking for when SR is created

* feat: add keep trackign of unique identifiers

* fix hydration for same imageIds

* feat: Add SR toolGroup creation on modeEnter

* feat: remove the need for separate mapper for SR hydration

* add SR display for ellipse

* handle hydration of elliptical ROI tool

* remove cornerstone extension

* add arrow mapping

* feat: Add ArrowAnnotate SR display and hydration

* apply review comments

* apply review comments

* move viewport labels to the viewportData

* apply review comments

* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)

* fix: integration cypress tests with cornerstone3D

* revert to addOrUpdate as it makes more sense

* fix local drag and drop

* fix tests

* move dicomLoaderService to cornerstone extension

* fix various import bugs

* fix bug for local PT series

* fix various unit tests

* bump cs3d versions

* add angle and magnify tool

* bump dependencies to avoid broken peerDeps

* feat: add initial work for capture using cs3d

* feat: show annotations on the image capture

* feat: add svg layer export

* feat: Add CINE Tool

* feat: remove unnecessary viewport rendering for cine state changes

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>

* docs: modify and improve documentation (#2800)

* cleanup docs versionings

* feat: Add all version explanations

* version docs for 3.0

* wip for changing docs

* wip for updated docs

* add utility module documentation

* fix demo with nohoisting of history

* add slides and video to resources

* apply review comments

* fix: drag and drop SR into SR viewport (#2803)

* update yarn lock

Co-authored-by: Erik <erik.sweed@gmail.com>

* update pathnames to match v3-stable

* update the e2e pathname

* fix: various bugs with regard to tracking workflow (#2811)

* fix: various issues with measurement panel

* fix: update default tool style for annotations

* fix: annotatoin label getting removed

* feat: Add backward compatibility for SR hydration with legacy cornerstone

* fix: cursors and ellipse ROI max style

* fix: ArrowAnnotate SRDisplay

* apply review comments

* bump package versions

* fix: bugin rehydration of SR

* fix: e2e tests

* fix active viewport thickness and arrowTool ui

* add readme for measurement tracking

* use uploaded image for readme

* add back images

* try to fix e2e test

* fix: window level presets hotkeys

* Update README.md

* update yarn lock

* feat: volume api and TMTV mode (#2817)

* feat: volumeAPI and TMTV mode

* feat: use cs3d cache service to obtain viewportData

* wip for volume api

* wip: fusion viewport

* feat: add blend mode option

* wip for image scrollbar

* fix drag and drop thumbnail

* wip for image scrollbar for voluems

* fix: element mismatch bug for scroll

* feat: Add image scrollbar to volumes

* feat: add syncGroups to volume api

* feat: add tmtv mode initial setup

* feat: add initial image options for the stack viewports

* feat: Add custom load strategy for volume viewports via HP

* apply review comments

fix: Jump presets cs3d (#2812)

* feat: Add JumpPreset to OHIF for Cornerstone3D

* fix: accessing viewport service from servicesManager

feat: volume API and TMTV mode (#2814)

* fix: do not display overlays on mip viewports

* feat: add optional disableCommands for toggle buttons

* fix: toggleCrossharis

* feat: config the crosshairs

* feat: add PetSUV Panel for changing metadata

* feat: initial work for the rectangleROIThreshold panel

* wip: measurement service

* roi threshold working

* feat: Add displayText to segmentations

* feat: add remove segmentation

* feat: add csv export

* feat: add RT export for annotations in tmtv mode

* fix: fusion to use pt in tmtv mode and measuremet mappings

* fix: various bugs

* apply review comments

* apply review comments

* feat: add fusion color maps

* add readme to tmtv mode

* Update README.md

* fix: try to fix build

* fix unit tests

* Update README.md

* feat: add about to the panel

* fix: changing strategy in roi panel

* apply review comments

* update package versions

* wip for stackPrefetch

* fix: cornerstone3d hydration and renaming (#2818)

* update readme

* renamed cornerstone extension

* wip for renaming cornerstone3D variables

* wip for renaming cornerstone3D variables

* wip for fixing bugs for SR viewport

* fix: jumpToMeasurement and initial label after hydration

* fix: fileName capitalization

* feat: use the new prefetch stack in the cs3d (#2820)

* feat: use the new prefetch stack in the cs3d

* use viewport scroll api for stack viewport

* fix cine stop when scrollbar changes

* feat: use new prefetch events

* fix loading state to not show repeatedly

* fix: various bugs for tmtv mode thresholding and new icons (#2823)

* feat: make tmtv mode available in worklist

* feat: add new icons for tmtv mode

* feat: add fusion color icon

* fix: parallel scale calculation

* fix: bump Cornerstone to get large image support working

* fix: Fix issues with CPU viewport flipping, including config files

* fix: bump cornerstone to fix magnify tool

* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport

* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys

* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors

* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)

Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.

* bump: dependency versions to fix hydration bugs (#2848)

* bump: dcmjs version to fix hydration bugs

* try to fix tests

* bump dependency versions

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
..
.recipes feat: Add White Labelling, Hanging Protocols, and tons of Extensions / Mode fixes 2021-05-28 14:32:48 -04:00
.webpack feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
assets Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
cypress feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
public feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
src feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
.all-contributorsrc Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
.browserslistrc fix: measurementsAPI issue caused by production build (#842) 2019-09-04 13:53:13 -04:00
.dockerignore Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
.env feat: New @ohif/viewer project structure + routes (#1674) 2020-05-15 12:57:23 +01:00
.env.example feat: New @ohif/viewer project structure + routes (#1674) 2020-05-15 12:57:23 +01:00
.eslintignore Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
babel.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
CHANGELOG.md chore(release): publish [skip ci] 2020-05-14 14:24:17 +00:00
cypress.json chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
jest.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
jestBabelTransform.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
LICENSE Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
netlify.toml feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
package.json feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
pluginConfig.json feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
postcss.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
preinstall.js feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
README.md Docs reorganization 2021-07-15 09:54:01 +02:00
tailwind.config.js feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
tailwind.css fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00

@ohif/viewer

@ohif/viewer is a zero-footprint medical image viewer provided by the Open Health Imaging Foundation (OHIF). It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support DICOMweb.


NPM version NPM downloads Pulls All Contributors MIT License

ATTENTION: If you are looking for Version 1 (the Meteor Version) of this repository, it lives on the v1.x branch

Why?

Building a web based medical imaging viewer from scratch is time intensive, hard to get right, and expensive. Instead of re-inventing the wheel, you can use the OHIF Viewer as a rock solid platform to build on top of. The Viewer is a React Progressive Web Application that can be embedded in existing applications via it's packaged source (ohif-viewer) or hosted stand-alone. The Viewer exposes configuration and extensions to support workflow customization and advanced functionality at common integration points.

If you're interested in using the OHIF Viewer, but you're not sure it supports your use case check out our docs. Still not sure, or you would like to propose new features? Don't hesitate to create an issue or open a pull request.

Getting Started

This readme is specific to testing and developing locally. If you're more interested in production deployment strategies, you can check out our documentation on publishing.

Want to play around before you dig in? Check out our LIVE Demo

Setup

Requirements:

Steps:

  1. Fork this repository
  2. Clone your forked repository (your origin)
  • git clone git@github.com:YOUR_GITHUB_USERNAME/Viewers.git
  1. Add OHIF/Viewers as a remote repository (the upstream)
  • git remote add upstream git@github.com:OHIF/Viewers.git

Developing Locally

In your cloned repository's root folder, run:

// Restore dependencies
yarn install

// Stands up local server to host Viewer.
// Viewer connects to our public cloud PACS by default
yarn start

For more advanced local development scenarios, like using your own locally hosted PACS and test data, check out our Essential: Getting Started guide.

E2E Tests

Using Cypress to create End-to-End tests and check whether the application flow is performing correctly, ensuring that the integrated components are working as expected.

Why Cypress?

Cypress is a next generation front end testing tool built for the modern web. With Cypress is easy to set up, write, run and debug tests

It allow us to write different types of tests:

  • End-to-End tests
  • Integration tests
  • Unit tets

All tests must be in ./cypress/integration folder.

Commands to run the tests:

// Open Cypress Dashboard that provides insight into what happened when your tests ran
yarn run cy

// Run all tests using Electron browser headless
yarn run cy:run

// Run all tests in CI mode
yarn run cy:run:ci

Contributing

Large portions of the Viewer's functionality are maintained in other repositories. To get a better understanding of the Viewer's architecture and "where things live", read our docs on the Viewer's architecture

It is notoriously difficult to setup multiple dependent repositories for end-to-end testing and development. That's why we recommend writing and running unit tests when adding and modifying features. This allows us to program in isolation without a complex setup, and has the added benefit of producing well-tested business logic.

  1. Clone this repository
  2. Navigate to the project directory, and yarn install
  3. To begin making changes, yarn run dev
  4. To commit changes, run yarn run cm

When creating tests, place the test file "next to" the file you're testing. For example:

// File
index.js;

// Test for file
index.test.js;

As you add and modify code, jest will watch for uncommitted changes and run your tests, reporting the results to your terminal. Make a pull request with your changes to master, and a core team member will review your work. If you have any questions, please don't hesitate to reach out via a GitHub issue.

Contributors

Thanks goes to these wonderful people (emoji key):

Erik Ziegler
Erik Ziegler

💻 🚇
Evren Ozkan
Evren Ozkan

💻
Gustavo André Lelis
Gustavo André Lelis

💻
Danny Brown
Danny Brown

💻 🚇
allcontributors[bot]
allcontributors[bot]

📖
Esref Durna
Esref Durna

💬
diego0020
diego0020

💻
David Wire
David Wire

💻
João Felipe de Medeiros Moreira
João Felipe de Medeiros Moreira

⚠️

This project follows the all-contributors specification. Contributions of any kind welcome!

License

MIT © OHIF