cc5dc20164
* fix: Use newer ONNX version and load without errors * Only changes to enable SAM again * fix(seg hydration): auto-hydrate RT struct on second load with disableConfirmationPrompts (#5875) * chore(version): Update package versions to 3.13.0-beta.34 [skip ci] * fix(Threshold tool): Threshold tool no longer becomes deselected when the Dynamic option is selected (#5884) fix(Threshold tool): Added 'ThresholdCircularBrushDynamic' to the toolNames array so the evaluator correctly recognizes it as an active state for the Threshold button when Dynamic mode is selected. * chore(version): Update package versions to 3.13.0-beta.35 [skip ci] * fix: Modalities in study list should select starts with as primary (#5886) * chore(version): Update package versions to 3.13.0-beta.36 [skip ci] * fix(security): Bump tar version to address CVE-2026-31802. (#5893) * chore(version): Update package versions to 3.13.0-beta.37 [skip ci] * fix(segmentation): Display "No description S:{series number} {modality}" for segmentations with no label. (#5874) * Bump CS3D dependency to get the fallbackLabel field additions. * chore(version): Update package versions to 3.13.0-beta.38 [skip ci] * fix(window level): The window level value is not displayed by default on all the viewports when selecting common/custom layout and TMTV. (#5865) * fix(window level): Set up listener for viewport availability such that the initial window level can be read and displayed. * PR feedback. * PR feedback. --------- Co-authored-by: Bill Wallace <wayfarer3130@gmail.com> * chore(version): Update package versions to 3.13.0-beta.39 [skip ci] * fix(security): Bump flattened version to address CVE-2026-32141. (#5897) * chore(version): Update package versions to 3.13.0-beta.40 [skip ci] * fix(sr-hydration): enable hydration and arrow navigation for 3D SR measurements (#5887) Joe is away, so approving based on the code having the requested change, and otherwise looking good/passing tests. * fix(sr-hydration): enable hydration and arrows navigation for 3D SR measurements * test: add automated test for SR measurement navigation with arrows after hydration * add cross-study warning in the 3D branch * test: address reviewer feedback for the test * fix: support 3D and 2D annotations for SR hydration * test: improve navigation to first image --------- Co-authored-by: Bill Wallace <wayfarer3130@gmail.com> * chore(version): Update package versions to 3.13.0-beta.41 [skip ci] * feat: Add combined build (#5895) * Add combined build * Link script location update * Security and validation fixes * Allow specifying target path in PR description * fix: Version match * Fix build detection issue * fix: Playwright deploy * Separate out the branch merge guard * Update docs and link info * test: Update the layout change to wait for network idle * Move audit late so the rest of the build can be worked on * Add text with network check to ensure we see this change is updated * Attempt to fix the mpr loading on ohif-downstream * PR review comments * Update docs * Update to CS3D 4.20.0 * PR comments * Add log on ohif-integration builds * Update build test * Removed unused space to kickoff build * chore(version): Update package versions to 3.13.0-beta.42 [skip ci] * fix(SR): Added support for spline and live wire SR items. (#5870) * fix(SR): Added support for spline and live wire SR items. * Apply suggestion from @greptile-apps[bot] Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Add a script to checkout a worktree for test builds * fix: Allow download for testing sr validator * Remove script that wasn't intended to be included * Bump CS3D version. * PR comments - simplify code and use single codepath for download * Allow both download and save buttons for SEG and RTSTRUCT --------- Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com> * chore(version): Update package versions to 3.13.0-beta.43 [skip ci] * chore(tests): contour segment interactions e2e tests - rename and togglevisibility (#5891) * chore(version): Update package versions to 3.13.0-beta.44 [skip ci] * chore(refactor): use public appConfig getter instead of private _appConfig field (#5923) * chore(version): Update package versions to 3.13.0-beta.45 [skip ci] * refactor(tests): update viewport page object usage to async and update all effected tests (#5927) * chore(version): Update package versions to 3.13.0-beta.46 [skip ci] * fix: prevent black viewport when navigating series with client-created segmentation (#5919) * chore(version): Update package versions to 3.13.0-beta.47 [skip ci] * fix(measurement): Restore viewport interactivity when deleting in-progress Spline or Livewire measurement (#5905) * chore(version): Update package versions to 3.13.0-beta.48 [skip ci] * fix(segmentation): restrict overlay segmentation menu to same frame of reference as viewport background display set (#5900) - Add FrameOfReferenceUID to SEG and RTSTRUCT displaySet in SOP Class Handlers so the FOR is available for filtering - Sync optimisticOverlayDisplaySets when background display set changes so the overlay menu reflects the correct state after a background switch - Add FOR matching guard to the hydrate segmentation synchronizer to prevent the hydration synchronizer from blindly mirroring segmentations from a source viewport to a target viewport if their primary Frames of Reference do not align. - fix segmentation overlay order reversal on viewport re-render * chore(version): Update package versions to 3.13.0-beta.49 [skip ci] * fix(security): update dependencies to fix security vulnerabilities (#5936) * chore(version): Update package versions to 3.13.0-beta.50 [skip ci] * fix(security): Update yarn.lock that was missed in PR #5936. (#5940) * chore(version): Update package versions to 3.13.0-beta.51 [skip ci] * feat(component): Adds SmartScrollbar to ui-next - OHIF-2558 (#5924) Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com> * fix(defaultRouteInit): pass sorted display sets to hanging protocol for deterministic viewport order (#5933) fix: pass sorted display sets to hanging protocol for deterministic viewport order The `applyHangingProtocol` function already sorts display sets by modality priority and series number into `sortedDisplaySets`, but the unsorted `displaySets` array was being passed to `hangingProtocolService.run()`. This caused non-deterministic viewport ordering across page loads because `displaySetService.getActiveDisplaySets()` returns display sets in creation order, which depends on asynchronous network responses. Made-with: Cursor * chore(version): Update package versions to 3.13.0-beta.52 [skip ci] * revert: rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID (#5943) * chore(version): Update package versions to 3.13.0-beta.53 [skip ci] * fix(cornerstone): read FrameOfReferenceUID from display set in viewport service (#5950) * chore(version): Update package versions to 3.13.0-beta.54 [skip ci] * fix: ignore auth in git (#5955) * chore(version): Update package versions to 3.13.0-beta.55 [skip ci] * ONNX latest version * chore(version): Update package versions to 3.13.0-beta.56 [skip ci] * bun lock * fix high sev mathjs issue * Revert onnx changes * Update to recent CS3D version * Undo unneeded change * Add null check * Undo unneeded change --------- Co-authored-by: Ghadeer Albattarni <165973963+GhadeerAlbattarni@users.noreply.github.com> Co-authored-by: ohif-bot <danny.ri.brown+ohif-bot@gmail.com> Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com> Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> Co-authored-by: diattamo <mmddiatta@gmail.com> Co-authored-by: Pedro Köhler <pedrokohlerbh@gmail.com> Co-authored-by: Dan Rukas <dan.rukas@gmail.com> Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com> Co-authored-by: Alireza <ar.sedghi@gmail.com>
dicom-seg
Description
DICOM SEG read workflow. This extension will allow you to load a DICOM SEG image and display it on OHIF. Currently Segmentations are loaded as a volumetric labelmap and displayed as a 3D volume.
This extension provides a SEG viewport, which enables rendering and reviewing of the DICOM SEG images. However, in order to fully load all the segments you will need to click on the SEG Pill button on the viewport action bar to fully load the segments.
Author
OHIF
License
MIT