ohif-viewer/extensions/cornerstone/src/OHIFCornerstoneViewport.js
Igor Octaviano e8842cf8ae
feat: Segmentations Settings UI - Phase 1 #1391 (#1392)
* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* fix: bump cornerstone-tools version to address toFixed issue

* test: force tests for MISTER^MR to navigate to study directly

* test: remove eraser tool test

* test: count is off by one

* test: don't save SR state for the time being

* test: disable more tests

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-03-13 15:45:26 -04:00

239 lines
5.6 KiB
JavaScript

import React, { Component } from 'react';
import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
const { StackManager } = OHIF.utils;
class OHIFCornerstoneViewport extends Component {
state = {
viewportData: null,
};
static defaultProps = {
customProps: {},
};
static propTypes = {
studies: PropTypes.object,
displaySet: PropTypes.object,
viewportIndex: PropTypes.number,
children: PropTypes.node,
customProps: PropTypes.object,
};
static id = 'OHIFCornerstoneViewport';
static init() {
console.log('OHIFCornerstoneViewport init()');
}
static destroy() {
console.log('OHIFCornerstoneViewport destroy()');
StackManager.clearStacks();
}
/**
* Obtain the CornerstoneTools Stack for the specified display set.
*
* @param {Object[]} studies
* @param {String} StudyInstanceUID
* @param {String} displaySetInstanceUID
* @param {String} [SOPInstanceUID]
* @param {Number} [frameIndex=1]
* @return {Object} CornerstoneTools Stack
*/
static getCornerstoneStack(
studies,
StudyInstanceUID,
displaySetInstanceUID,
SOPInstanceUID,
frameIndex = 0
) {
if (!studies || !studies.length) {
throw new Error('Studies not provided.');
}
if (!StudyInstanceUID) {
throw new Error('StudyInstanceUID not provided.');
}
if (!displaySetInstanceUID) {
throw new Error('StudyInstanceUID not provided.');
}
// Create shortcut to displaySet
const study = studies.find(
study => study.StudyInstanceUID === StudyInstanceUID
);
if (!study) {
throw new Error('Study not found.');
}
const displaySet = study.displaySets.find(set => {
return set.displaySetInstanceUID === displaySetInstanceUID;
});
if (!displaySet) {
throw new Error('Display Set not found.');
}
// Get stack from Stack Manager
const storedStack = StackManager.findOrCreateStack(study, displaySet);
// Clone the stack here so we don't mutate it
const stack = Object.assign({}, storedStack);
stack.currentImageIdIndex = frameIndex;
if (SOPInstanceUID) {
const index = stack.imageIds.findIndex(imageId => {
const imageIdSOPInstanceUID = cornerstone.metaData.get(
'SOPInstanceUID',
imageId
);
return imageIdSOPInstanceUID === SOPInstanceUID;
});
if (index > -1) {
stack.currentImageIdIndex = index;
} else {
console.warn(
'SOPInstanceUID provided was not found in specified DisplaySet'
);
}
}
return stack;
}
getViewportData = async (
studies,
StudyInstanceUID,
displaySetInstanceUID,
SOPInstanceUID,
frameIndex
) => {
let viewportData;
const stack = OHIFCornerstoneViewport.getCornerstoneStack(
studies,
StudyInstanceUID,
displaySetInstanceUID,
SOPInstanceUID,
frameIndex
);
viewportData = {
StudyInstanceUID,
displaySetInstanceUID,
stack,
};
return viewportData;
};
setStateFromProps() {
const { studies, displaySet } = this.props.viewportData;
const {
StudyInstanceUID,
displaySetInstanceUID,
sopClassUIDs,
SOPInstanceUID,
frameIndex,
} = displaySet;
if (!StudyInstanceUID || !displaySetInstanceUID) {
return;
}
if (sopClassUIDs && sopClassUIDs.length > 1) {
console.warn(
'More than one SOPClassUID in the same series is not yet supported.'
);
}
this.getViewportData(
studies,
StudyInstanceUID,
displaySetInstanceUID,
SOPInstanceUID,
frameIndex
).then(viewportData => {
this.setState({
viewportData,
});
});
}
componentDidMount() {
this.setStateFromProps();
}
componentDidUpdate(prevProps) {
const { displaySet } = this.props.viewportData;
const prevDisplaySet = prevProps.viewportData.displaySet;
if (
displaySet.displaySetInstanceUID !==
prevDisplaySet.displaySetInstanceUID ||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
displaySet.frameIndex !== prevDisplaySet.frameIndex
) {
this.setStateFromProps();
}
}
render() {
let childrenWithProps = null;
if (!this.state.viewportData) {
return null;
}
const { viewportIndex } = this.props;
const {
imageIds,
currentImageIdIndex,
// If this comes from the instance, would be a better default
// `FrameTime` in the instance
// frameRate = 0,
} = this.state.viewportData.stack;
// TODO: Does it make more sense to use Context?
if (this.props.children && this.props.children.length) {
childrenWithProps = this.props.children.map((child, index) => {
return (
child &&
React.cloneElement(child, {
viewportIndex: this.props.viewportIndex,
key: index,
})
);
});
}
return (
<>
<ConnectedCornerstoneViewport
viewportIndex={viewportIndex}
imageIds={imageIds}
imageIdIndex={currentImageIdIndex}
// ~~ Connected (From REDUX)
// frameRate={frameRate}
// isPlaying={false}
// isStackPrefetchEnabled={true}
// onElementEnabled={() => {}}
// setViewportActive{() => {}}
{...this.props.customProps}
/>
{childrenWithProps}
</>
);
}
}
export default OHIFCornerstoneViewport;