ohif-viewer/modes/microscopy/src/index.tsx
M.D 075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00

143 lines
4.6 KiB
TypeScript

import { hotkeys } from '@ohif/core';
import { id } from './id';
import toolbarButtons from './toolbarButtons';
const ohif = {
layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',
sopClassHandler: '@ohif/extension-default.sopClassHandlerModule.stack',
hangingProtocols: '@ohif/extension-default.hangingProtocolModule.default',
leftPanel: '@ohif/extension-default.panelModule.seriesList',
rightPanel: '@ohif/extension-default.panelModule.measure',
};
export const cornerstone = {
viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',
};
const dicomvideo = {
sopClassHandler:
'@ohif/extension-dicom-video.sopClassHandlerModule.dicom-video',
viewport: '@ohif/extension-dicom-video.viewportModule.dicom-video',
};
const dicompdf = {
sopClassHandler: '@ohif/extension-dicom-pdf.sopClassHandlerModule.dicom-pdf',
viewport: '@ohif/extension-dicom-pdf.viewportModule.dicom-pdf',
};
const extensionDependencies = {
// Can derive the versions at least process.env.from npm_package_version
'@ohif/extension-default': '^3.0.0',
'@ohif/extension-cornerstone': '^3.0.0',
'@ohif/extension-cornerstone-dicom-sr': '^3.0.0',
'@ohif/extension-dicom-pdf': '^3.0.1',
'@ohif/extension-dicom-video': '^3.0.1',
'@ohif/extension-dicom-microscopy': '^3.0.0',
};
function modeFactory() {
return {
// TODO: We're using this as a route segment
// We should not be.
id,
routeName: 'microscopy',
displayName: 'Microscopy',
/**
* Lifecycle hooks
*/
onModeEnter: ({ servicesManager, extensionManager, commandsManager }) => {
const { toolbarService } = servicesManager.services;
toolbarService.init(extensionManager);
toolbarService.addButtons(toolbarButtons);
toolbarService.createButtonSection('primary', [
'MeasurementTools',
'dragPan',
]);
},
onModeExit: ({ servicesManager }) => {
const { toolbarService } = servicesManager.services;
toolbarService.reset();
},
validationTags: {
study: [],
series: [],
},
isValidMode: ({ modalities }) => {
const modalities_list = modalities.split('\\');
// Slide Microscopy and ECG modality not supported by basic mode yet
return modalities_list.includes('SM');
},
routes: [
{
path: 'microscopy',
/*init: ({ servicesManager, extensionManager }) => {
//defaultViewerRouteInit
},*/
layoutTemplate: ({ location, servicesManager }) => {
return {
id: ohif.layout,
props: {
leftPanels: [ohif.leftPanel],
leftPanelDefaultClosed: true, // we have problem with rendering thumbnails for microscopy images
rightPanelDefaultClosed: true, // we do not have the save microscopy measurements yet
rightPanels: [
'@ohif/extension-dicom-microscopy.panelModule.measure',
],
viewports: [
{
namespace:
'@ohif/extension-dicom-microscopy.viewportModule.microscopy-dicom',
displaySetsToDisplay: [
'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySopClassHandler',
'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySRSopClassHandler',
],
},
{
namespace: dicomvideo.viewport,
displaySetsToDisplay: [dicomvideo.sopClassHandler],
},
{
namespace: dicompdf.viewport,
displaySetsToDisplay: [dicompdf.sopClassHandler],
},
],
},
};
},
},
],
extensions: extensionDependencies,
hangingProtocols: [ohif.hangingProtocols],
hangingProtocol: ['default'],
// Order is important in sop class handlers when two handlers both use
// the same sop class under different situations. In that case, the more
// general handler needs to come last. For this case, the dicomvideo must
// come first to remove video transfer syntax before ohif uses images
sopClassHandlers: [
'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySopClassHandler',
'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySRSopClassHandler',
dicomvideo.sopClassHandler,
dicompdf.sopClassHandler,
],
hotkeys: [...hotkeys.defaults.hotkeyBindings],
};
}
const mode = {
id,
modeFactory,
extensionDependencies,
};
export default mode;