* skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
143 lines
4.6 KiB
TypeScript
143 lines
4.6 KiB
TypeScript
import { hotkeys } from '@ohif/core';
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import { id } from './id';
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import toolbarButtons from './toolbarButtons';
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const ohif = {
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layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',
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sopClassHandler: '@ohif/extension-default.sopClassHandlerModule.stack',
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hangingProtocols: '@ohif/extension-default.hangingProtocolModule.default',
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leftPanel: '@ohif/extension-default.panelModule.seriesList',
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rightPanel: '@ohif/extension-default.panelModule.measure',
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};
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export const cornerstone = {
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viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',
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};
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const dicomvideo = {
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sopClassHandler:
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'@ohif/extension-dicom-video.sopClassHandlerModule.dicom-video',
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viewport: '@ohif/extension-dicom-video.viewportModule.dicom-video',
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};
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const dicompdf = {
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sopClassHandler: '@ohif/extension-dicom-pdf.sopClassHandlerModule.dicom-pdf',
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viewport: '@ohif/extension-dicom-pdf.viewportModule.dicom-pdf',
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};
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const extensionDependencies = {
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// Can derive the versions at least process.env.from npm_package_version
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'@ohif/extension-default': '^3.0.0',
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'@ohif/extension-cornerstone': '^3.0.0',
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'@ohif/extension-cornerstone-dicom-sr': '^3.0.0',
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'@ohif/extension-dicom-pdf': '^3.0.1',
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'@ohif/extension-dicom-video': '^3.0.1',
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'@ohif/extension-dicom-microscopy': '^3.0.0',
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};
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function modeFactory() {
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return {
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// TODO: We're using this as a route segment
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// We should not be.
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id,
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routeName: 'microscopy',
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displayName: 'Microscopy',
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/**
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* Lifecycle hooks
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*/
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onModeEnter: ({ servicesManager, extensionManager, commandsManager }) => {
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const { toolbarService } = servicesManager.services;
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toolbarService.init(extensionManager);
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toolbarService.addButtons(toolbarButtons);
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toolbarService.createButtonSection('primary', [
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'MeasurementTools',
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'dragPan',
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]);
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},
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onModeExit: ({ servicesManager }) => {
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const { toolbarService } = servicesManager.services;
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toolbarService.reset();
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},
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validationTags: {
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study: [],
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series: [],
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},
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isValidMode: ({ modalities }) => {
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const modalities_list = modalities.split('\\');
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// Slide Microscopy and ECG modality not supported by basic mode yet
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return modalities_list.includes('SM');
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},
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routes: [
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{
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path: 'microscopy',
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/*init: ({ servicesManager, extensionManager }) => {
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//defaultViewerRouteInit
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},*/
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layoutTemplate: ({ location, servicesManager }) => {
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return {
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id: ohif.layout,
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props: {
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leftPanels: [ohif.leftPanel],
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leftPanelDefaultClosed: true, // we have problem with rendering thumbnails for microscopy images
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rightPanelDefaultClosed: true, // we do not have the save microscopy measurements yet
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rightPanels: [
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'@ohif/extension-dicom-microscopy.panelModule.measure',
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],
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viewports: [
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{
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namespace:
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'@ohif/extension-dicom-microscopy.viewportModule.microscopy-dicom',
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displaySetsToDisplay: [
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'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySopClassHandler',
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'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySRSopClassHandler',
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],
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},
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{
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namespace: dicomvideo.viewport,
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displaySetsToDisplay: [dicomvideo.sopClassHandler],
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},
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{
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namespace: dicompdf.viewport,
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displaySetsToDisplay: [dicompdf.sopClassHandler],
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},
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],
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},
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};
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},
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},
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],
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extensions: extensionDependencies,
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hangingProtocols: [ohif.hangingProtocols],
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hangingProtocol: ['default'],
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// Order is important in sop class handlers when two handlers both use
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// the same sop class under different situations. In that case, the more
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// general handler needs to come last. For this case, the dicomvideo must
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// come first to remove video transfer syntax before ohif uses images
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sopClassHandlers: [
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'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySopClassHandler',
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'@ohif/extension-dicom-microscopy.sopClassHandlerModule.DicomMicroscopySRSopClassHandler',
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dicomvideo.sopClassHandler,
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dicompdf.sopClassHandler,
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],
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hotkeys: [...hotkeys.defaults.hotkeyBindings],
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};
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}
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const mode = {
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id,
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modeFactory,
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extensionDependencies,
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};
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export default mode;
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