chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272)
@ -13,11 +13,23 @@ version: 2.1
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@1.13.0
|
||||
cypress: cypress-io/cypress@1.26.0
|
||||
executors:
|
||||
# Custom executor to override Cypress config
|
||||
deploy-to-prod-executor:
|
||||
docker:
|
||||
- image: 'cypress/browsers:node14.15.0-chrome86-ff82'
|
||||
environment:
|
||||
CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
|
||||
chrome-and-pacs:
|
||||
docker:
|
||||
# Primary container image where all steps run.
|
||||
- image: 'cypress/browsers:node14.15.0-chrome86-ff82'
|
||||
- image: 'ohif/viewer-testdata:0.1-test'
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
- image: circleci/node:14.15.0
|
||||
environment:
|
||||
TERM: xterm # Enable colors in term
|
||||
QUICK_BUILD: true
|
||||
@ -170,7 +182,7 @@ jobs:
|
||||
|
||||
DEPLOY_TO_DEV:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
- image: circleci/node:14.15.0
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
|
||||
@ -185,7 +197,7 @@ jobs:
|
||||
|
||||
DEPLOY_TO_STAGING:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
- image: circleci/node:14.15.0
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
|
||||
@ -200,7 +212,7 @@ jobs:
|
||||
|
||||
DEPLOY_TO_PRODUCTION:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
- image: circleci/node:14.15.0
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
|
||||
@ -307,8 +319,73 @@ jobs:
|
||||
workflows:
|
||||
version: 2
|
||||
|
||||
# WORKFLOWS Disabled until this feature branch is further along
|
||||
# See Master's CircleCI Config
|
||||
PR_CHECKS:
|
||||
jobs:
|
||||
- UNIT_TESTS:
|
||||
filters:
|
||||
branches:
|
||||
ignore:
|
||||
- master
|
||||
- feature/*
|
||||
- hotfix/*
|
||||
# E2E: PWA
|
||||
- cypress/run:
|
||||
name: 'E2E: PWA'
|
||||
executor: chrome-and-pacs
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: |
|
||||
# Clear yarn cache; update to latest
|
||||
rm -rf ~/.yarn
|
||||
npm i -g yarn
|
||||
yarn -v
|
||||
yarn: true
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/videos
|
||||
- store_test_results:
|
||||
path: platform/viewer/cypress/results
|
||||
requires:
|
||||
- UNIT_TESTS
|
||||
|
||||
PR_OPTIONAL_VISUAL_TESTS:
|
||||
jobs:
|
||||
- AWAIT_APPROVAL:
|
||||
type: approval
|
||||
# Update hub.docker.org
|
||||
- cypress/run:
|
||||
name: 'Generate Percy Snapshots'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/videos
|
||||
requires:
|
||||
- AWAIT_APPROVAL
|
||||
|
||||
DEPLOY:
|
||||
jobs:
|
||||
@ -319,3 +396,61 @@ workflows:
|
||||
- DEPLOY_TO_DEV:
|
||||
requires:
|
||||
- BUILD
|
||||
- PROMOTE_TO_STAGING:
|
||||
type: approval
|
||||
requires:
|
||||
- DEPLOY_TO_DEV
|
||||
- DEPLOY_TO_STAGING:
|
||||
requires:
|
||||
- PROMOTE_TO_STAGING
|
||||
- PROMOTE_TO_PRODUCTION:
|
||||
type: approval
|
||||
requires:
|
||||
- DEPLOY_TO_STAGING
|
||||
- DEPLOY_TO_PRODUCTION:
|
||||
requires:
|
||||
- PROMOTE_TO_PRODUCTION
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
###
|
||||
RELEASE:
|
||||
jobs:
|
||||
- NPM_PUBLISH:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCS_PUBLISH:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
# Update base branch snapshots
|
||||
# and record a Cypress dashboard test run
|
||||
- cypress/run:
|
||||
name: 'Generate Percy Snapshots'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/videos
|
||||
- store_test_results:
|
||||
path: platform/viewer/cypress/results
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCKER_MASTER_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
|
||||
@ -16,7 +16,8 @@
|
||||
},
|
||||
"rules": {
|
||||
"react/jsx-props-no-spreading": "error",
|
||||
"react-hooks/exhaustive-deps": "false"
|
||||
"react-hooks/exhaustive-deps": "false",
|
||||
"import/no-unused-modules": [1, {"unusedExports": true}]
|
||||
},
|
||||
"globals": {
|
||||
"cy": true,
|
||||
|
||||
1
.vscode/extensions.json
vendored
@ -1,7 +1,6 @@
|
||||
{
|
||||
"recommendations": [
|
||||
"esbenp.prettier-vscode",
|
||||
"sysoev.language-stylus",
|
||||
"dbaeumer.vscode-eslint",
|
||||
"mikestead.dotenv",
|
||||
"bungcip.better-toml",
|
||||
|
||||
@ -1,10 +0,0 @@
|
||||
const stylusToJavaScript = {
|
||||
test: /\.styl$/,
|
||||
use: [
|
||||
{ loader: 'style-loader' }, // 3. Style nodes from JS Strings
|
||||
{ loader: 'css-loader' }, // 2. CSS to CommonJS
|
||||
{ loader: 'stylus-loader' }, // 1. Stylus to CSS
|
||||
],
|
||||
};
|
||||
|
||||
module.exports = stylusToJavaScript;
|
||||
@ -14,6 +14,7 @@ const TerserJSPlugin = require('terser-webpack-plugin');
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
const QUICK_BUILD = process.env.QUICK_BUILD;
|
||||
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
|
||||
const { UnusedFilesWebpackPlugin } = require("unused-files-webpack-plugin");
|
||||
|
||||
//
|
||||
dotenv.config();
|
||||
@ -99,6 +100,18 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
process.env.LOCIZE_API_KEY || ''
|
||||
),
|
||||
}),
|
||||
new UnusedFilesWebpackPlugin({
|
||||
failOnUnused: true,
|
||||
globOptions: {
|
||||
ignore: [
|
||||
"node_modules/**/*",
|
||||
"index.umd.js",
|
||||
"sanity.test.js",
|
||||
"__mocks__/fileMock.js",
|
||||
"__tests__/globalSetup.js"
|
||||
]
|
||||
}
|
||||
}),
|
||||
],
|
||||
// Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
|
||||
// For issue in cornerstone-wado-image-loader
|
||||
|
||||
@ -1,19 +0,0 @@
|
||||
const merge = require('webpack-merge');
|
||||
const webpackBase = require('./webpack.base.js');
|
||||
const cssToJavaScriptRule = require('./rules/cssToJavaScript.js');
|
||||
const stylusToJavaScriptRule = require('./rules/stylusToJavaScript.js');
|
||||
|
||||
/**
|
||||
* WebPack configuration for CommonJS Bundles. Extends rules of BaseConfig by making
|
||||
* sure we're bundling styles and other files that would normally be split in a
|
||||
* PWA.
|
||||
*/
|
||||
module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
const baseConfig = webpackBase(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(baseConfig, {
|
||||
module: {
|
||||
rules: [cssToJavaScriptRule, stylusToJavaScriptRule],
|
||||
},
|
||||
});
|
||||
};
|
||||
45
README.md
@ -173,9 +173,7 @@ also supports a number of commands that can be found in their respective
|
||||
| `dev:project <package-name>` | Replace with `core`, `ui`, `i18n`, `cornerstone`, `vtk`, etc. |
|
||||
| `test:unit` | Jest multi-project test runner; overall coverage |
|
||||
| **Deploy** | |
|
||||
| `build`\* | Builds production output for our PWA Viewer |
|
||||
| `build:package`\* | Builds production `commonjs` output for our Viewer |
|
||||
| `build:package-all`\* | Builds commonjs bundles for all projects |
|
||||
| `build`\* | Builds production output for our PWA Viewer | |
|
||||
|
||||
\* - For more information on our different builds, check out our [Deploy
|
||||
Docs][deployment-docs]
|
||||
@ -189,24 +187,27 @@ you'll see the following:
|
||||
|
||||
```bash
|
||||
.
|
||||
├── extensions #
|
||||
│ ├── _example # Skeleton of example extension
|
||||
│ ├── cornerstone # 2D images w/ Cornerstone.js
|
||||
│ ├── dicom-html # Structured Reports as HTML in viewport
|
||||
│ ├── dicom-microscopy # Whole slide microscopy viewing
|
||||
│ ├── dicom-pdf # View DICOM wrapped PDFs in viewport
|
||||
│ └── vtk # MPR and Volume support w/ VTK.js
|
||||
├── extensions #
|
||||
│ ├── _example # Skeleton of example extension
|
||||
│ ├── default #
|
||||
│ ├── cornerstone # 2D images w/ Cornerstone.js
|
||||
│ ├── dicom-sr #
|
||||
│ └── measurement-tracking #
|
||||
│
|
||||
├── platform #
|
||||
│ ├── core # Business Logic
|
||||
│ ├── i18n # Internationalization Support
|
||||
│ ├── ui # React component library
|
||||
│ └── viewer # Connects platform and extension projects
|
||||
├── modes #
|
||||
│ ├── _example # Skeleton of example mode
|
||||
│ └── longitudinal #
|
||||
│
|
||||
├── ... # misc. shared configuration
|
||||
├── lerna.json # MonoRepo (Lerna) settings
|
||||
├── package.json # Shared devDependencies and commands
|
||||
└── README.md # This file
|
||||
├── platform #
|
||||
│ ├── core # Business Logic
|
||||
│ ├── i18n # Internationalization Support
|
||||
│ ├── ui # React component library
|
||||
│ └── viewer # Connects platform and extension projects
|
||||
│
|
||||
├── ... # misc. shared configuration
|
||||
├── lerna.json # MonoRepo (Lerna) settings
|
||||
├── package.json # Shared devDependencies and commands
|
||||
└── README.md # This file
|
||||
```
|
||||
|
||||
Want to better understand why and how we've structured this repository? Read
|
||||
@ -231,11 +232,7 @@ can [read more about extensions here][ohif-extensions].
|
||||
|
||||
| Name | Description | Links |
|
||||
| -------------------------------------------------------------- | ------------------------------------------------------- | ---------------------- |
|
||||
| [@ohif/extension-cornestone][extension-cornerstone] | 2D image viewing, annotation, and segementation tools | [NPM][cornerstone-npm] |
|
||||
| [@ohif/extension-dicom-html][extension-dicom-html] | Support for viewing DICOM SR as rendered HTML | [NPM][html-npm] |
|
||||
| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] | Whole slide microscopy viewing | [NPM][microscopy-npm] |
|
||||
| [@ohif/extension-dicom-pdf][extension-dicom-pdf] | View DICOM wrapped PDFs in a viewport | [NPM][pdf-npm] |
|
||||
| [@ohif/extension-vtk][extension-vtk] | Volume rendering, reconstruction, and 3D visualizations | [NPM][vtk-npm] |
|
||||
| [@ohif/extension-cornerstone][extension-cornerstone] | 2D image viewing, annotation, and segementation tools | [NPM][cornerstone-npm] |
|
||||
|
||||
## Acknowledgments
|
||||
|
||||
|
||||
@ -44,20 +44,3 @@ module.exports = {
|
||||
},
|
||||
},
|
||||
};
|
||||
|
||||
// TODO: Plugins; Aliases
|
||||
// We don't currently use aliases, but this is a nice snippet that would help
|
||||
// [
|
||||
// 'module-resolver',
|
||||
// {
|
||||
// // https://github.com/tleunen/babel-plugin-module-resolver/issues/338
|
||||
// // There seem to be a bug with module-resolver with a mono-repo setup:
|
||||
// // It doesn't resolve paths correctly when using root/alias combo, so we
|
||||
// // use this function instead.
|
||||
// resolvePath(sourcePath, currentFile, opts) {
|
||||
// // This will return undefined if aliases has no key for the sourcePath,
|
||||
// // in which case module-resolver will fallback on its default behaviour.
|
||||
// return aliases[sourcePath];
|
||||
// },
|
||||
// },
|
||||
// ],
|
||||
|
||||
@ -34,8 +34,12 @@
|
||||
"text": "Version 1.0.0 (Meteor)"
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/",
|
||||
"value": "https://docs.ohif.org/history/v2/",
|
||||
"text": "Version 2.0.0",
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/",
|
||||
"text": "Version 3.0.0",
|
||||
"selected": true
|
||||
}
|
||||
]
|
||||
|
||||
@ -35,8 +35,12 @@
|
||||
"selected": true
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/",
|
||||
"value": "https://docs.ohif.org/history/v2/",
|
||||
"text": "Version 2.0.0"
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/",
|
||||
"text": "Version 3.0.0"
|
||||
}
|
||||
]
|
||||
}
|
||||
|
||||
0
docs/v2/.nojekyll
Normal file
54
docs/v2/README.md
Normal file
@ -0,0 +1,54 @@
|
||||
<div class='row'>
|
||||
<div class='column' style='text-align: right; padding: 0 20px'>
|
||||
<strong>Looking for a Live Demo?</strong>
|
||||
<a href="http://viewer.ohif.org/">Preview The OHIF Viewer</a>
|
||||
</div>
|
||||
<div class='column' style='text-align: left; padding: 0 20px'>
|
||||
<a href="https://www.netlify.com">
|
||||
<img src="https://www.netlify.com/img/global/badges/netlify-color-bg.svg"/>
|
||||
</a>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
> ATTENTION! You are looking at the docs for the `React` version of the OHIF
|
||||
> Viewer. If you're looking for the `Meteor` version's documentation (now
|
||||
> deprecated), select it's version from the dropdown box in the top left corner
|
||||
> of this page.
|
||||
|
||||
# Introduction
|
||||
|
||||
The [Open Health Imaging Foundation][ohif-org] (OHIF) Viewer is an open source,
|
||||
web-based, medical imaging viewer. It can be configured to connect to Image
|
||||
Archives that support [DicomWeb][dicom-web], and offers support for mapping to
|
||||
proprietary API formats. OHIF maintained extensions add support for viewing,
|
||||
annotating, and reporting on DICOM images in 2D (slices) and 3D (volumes).
|
||||
|
||||

|
||||
|
||||
<center><i>The <strong>OHIF Viewer</strong>: A general purpose DICOM Viewer (<a href="http://viewer.ohif.org/">Live Demo</a>)</center>
|
||||
|
||||
The Open Health Imaging Foundation intends to provide a simple general purpose
|
||||
DICOM Viewer which can be easily extended for specific uses. If you find
|
||||
yourself unable to extend the viewer for your purposes, please reach out via our
|
||||
[GitHub issues][gh-issues]. We are actively seeking feedback on ways to improve
|
||||
our integration and extension points.
|
||||
|
||||
## Where to next?
|
||||
|
||||
Check out these helpful links:
|
||||
|
||||
- Ready to dive into some code? Check out our
|
||||
[Getting Started Guide](./development/getting-started.md).
|
||||
- We're an active, vibrant community.
|
||||
[Learn how you can be more involved.](./development/contributing.md)
|
||||
- Feeling lost? Read our [help page](./help.md).
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[ohif-org]: http://www.ohif.org
|
||||
[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
|
||||
[gh-issues]: https://github.com/OHIF/Viewers/issues
|
||||
<!-- prettier-ignore-end -->
|
||||
61
docs/v2/SUMMARY.md
Normal file
@ -0,0 +1,61 @@
|
||||
# OHIF Viewers
|
||||
|
||||
- [Our Process](our-process.md)
|
||||
- Development
|
||||
- [Getting Started](development/getting-started.md)
|
||||
- [Contributing](development/contributing.md)
|
||||
- [Continuous Integration](development/continous-integration.md)
|
||||
- [Testing](development/testing.md)
|
||||
- [Configuring](configuring/index.md)
|
||||
- [Data Source](configuring/data-source.md)
|
||||
|
||||
---
|
||||
|
||||
- [Architecture](architecture/index.md)
|
||||
- [Viewer](viewer/index.md)
|
||||
- [Configuration](viewer/configuration.md)
|
||||
- [Themeing](viewer/themeing.md)
|
||||
- [Internationalization](viewer/internationalization.md)
|
||||
- [Extensions](extensions/index.md)
|
||||
- [Registering](extensions/index.md#registering-an-extension)
|
||||
- [Lifecycle Hooks](extensions/index.md#lifecycle-hooks)
|
||||
- [preRegistration](extensions/lifecycle/pre-registration.md)
|
||||
- [Modules](extensions/index.md#modules)
|
||||
- [Commands](extensions/modules/commands.md)
|
||||
- [Panel](extensions/modules/panel.md)
|
||||
- [SOP Class Handler](extensions/modules/sop-class-handler.md)
|
||||
- [Toolbar](extensions/modules/toolbar.md)
|
||||
- [Viewport](extensions/modules/viewport.md)
|
||||
- [Contexts](extensions/index.md#contexts)
|
||||
- [ExtensionManager](extensions/index.md#extensionmanager)
|
||||
- [OHIF Maintained](extensions/index.md#maintained-extensions)
|
||||
- [Services](services/index.md)
|
||||
- [Default](services/default/index.md)
|
||||
- [UI](services/ui/index.md)
|
||||
- [Dialog Service](services/ui/ui-dialog-service.md)
|
||||
- [Modal Service](services/ui/ui-modal-service.md)
|
||||
- [Notification Service](services/ui/ui-notification-service.md)
|
||||
|
||||
---
|
||||
|
||||
- [Deployment](deployment/index.md)
|
||||
- [Embedded](deployment/index.md#embedded-viewer)
|
||||
- [Stand-alone](deployment/index.md#stand-alone-viewer)
|
||||
- [Data](deployment/index.md#data)
|
||||
- Recipes
|
||||
- Script Include
|
||||
- [Embedding the Viewer](deployment/recipes/embedded-viewer.md)
|
||||
- Stand-Alone
|
||||
- [Build for Production](deployment/recipes/build-for-production.md)
|
||||
- [Static](deployment/recipes/static-assets.md)
|
||||
- [Nginx + Image Archive](deployment/recipes/nginx--image-archive.md)
|
||||
- [User Account Control](deployment/recipes/user-account-control.md)
|
||||
- [Google Cloud Healthcare](connecting-to-image-archives/google-cloud-healthcare.md)
|
||||
|
||||
---
|
||||
|
||||
- [FAQ](faq/index.md)
|
||||
- [Scope of Project](faq/scope-of-project.md)
|
||||
- [Browser Support](faq/browser-support.md)
|
||||
- [PWA vs Packaged](faq/pwa-vs-packaged.md)
|
||||
- [Help](help.md)
|
||||
153
docs/v2/architecture/index.md
Normal file
@ -0,0 +1,153 @@
|
||||
# Architecture
|
||||
|
||||
Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a
|
||||
portion_ of the Viewer in your own application? Or maybe you want to get
|
||||
involved and draft or suggest a new feature? Regardless, you're in the right
|
||||
place!
|
||||
|
||||
The OHIF Viewer aims to be decoupled, configurable, and extensible; while this
|
||||
allows our code to be used in more ways, it also increases complexity. Below, we
|
||||
aim to demistify that complexity by providing insight into how our Viewer is
|
||||
architected, and the role each of it's dependent libraries plays.
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Business Logic](#business-logic)
|
||||
- [Component Library](#react-component-library)
|
||||
- [Extensions & Configuration](#extensions--configuration)
|
||||
- [Common Questions](#common-questions)
|
||||
|
||||
## Overview
|
||||
|
||||
The [OHIF Medical Image Viewing Platform][viewers-project] is maintained as a
|
||||
[`monorepo`][monorepo]. This means that this repository, instead of containing a
|
||||
single project, contains many projects. If you explore our project structure,
|
||||
you'll see the following:
|
||||
|
||||
```bash
|
||||
.
|
||||
├── extensions
|
||||
│ ├── _example # Skeleton of example extension
|
||||
│ ├── cornerstone # 2D images w/ Cornerstone.js
|
||||
│ ├── dicom-html # Structured Reports as HTML in viewport
|
||||
│ ├── dicom-microscopy # Whole slide microscopy viewing
|
||||
│ ├── dicom-pdf # View DICOM wrapped PDFs in viewport
|
||||
│ └── vtk # MPR and Volume support w/ VTK.js
|
||||
│
|
||||
├── platform
|
||||
│ ├── core # Business Logic
|
||||
│ ├── i18n # Internationalization Support
|
||||
│ ├── ui # React component library
|
||||
│ └── viewer # Connects platform and extension projects
|
||||
│
|
||||
├── ... # misc. shared configuration
|
||||
├── lerna.json # MonoRepo (Lerna) settings
|
||||
├── package.json # Shared devDependencies and commands
|
||||
└── README.md
|
||||
```
|
||||
|
||||
The `platform` directory contains the business logic library, component library,
|
||||
and the application library that combines them to create a powerful medical
|
||||
imaging viewer.
|
||||
|
||||
The `extensions` directory contains many packages that can be registered with
|
||||
`@ohif/core`'s `ExtensionManager` to expand an application's supported features
|
||||
and functionality.
|
||||
|
||||

|
||||
|
||||
<center><i>architecture diagram</i></center>
|
||||
|
||||
This diagram is a conceptual illustration of how the Viewer is architected.
|
||||
|
||||
1. (optional) `extensions` can be registered with `@ohif/core`'s
|
||||
`ExtensionManager`
|
||||
2. `@ohif/core` provides bussiness logic and a way for `@ohif/viewer` to access
|
||||
registered extensions
|
||||
3. The `@ohif/viewer` composes and provides data to components from our
|
||||
component library (`@ohif/ui`)
|
||||
4. The `@ohif/viewer` can be built and served as a stand-alone PWA, or as an
|
||||
embeddable package ([`@ohif/viewer`][viewer-npm])
|
||||
|
||||
## Business Logic
|
||||
|
||||
The [`@ohif/core`][core-github] project offers pre-packaged solutions for
|
||||
features common to Web-based medical imaging viewers. For example:
|
||||
|
||||
- Hotkeys
|
||||
- DICOM Web requests
|
||||
- Hanging Protocols
|
||||
- Managing a study's measurements
|
||||
- Managing a study's DICOM metadata
|
||||
- [A flexible pattern for extensions](../extensions/index.md)
|
||||
- And many others
|
||||
|
||||
It does this while remaining decoupled from any particular view library or
|
||||
rendering logic. While we use it to power our React Viewer, it can be used with
|
||||
Vue, React, Vanilla JS, or any number of other frameworks.
|
||||
|
||||
## React Component Library
|
||||
|
||||
[`@ohif/ui`][ui-github] is a React Component library that contains the reusable
|
||||
components that power the OHIF Viewer. It allows us to build, compose, and test
|
||||
components in isolation; easing the development process by reducing the need to
|
||||
stand-up a local PACS with test case data.
|
||||
|
||||
Extension authors can also use these same components when building their
|
||||
extension's UI; allowing for a consistent look and feel with the rest of the
|
||||
application.
|
||||
|
||||
[Check out our component library!](https://react.ohif.org/)
|
||||
|
||||
## Extensions & Configuration
|
||||
|
||||
While OHIF maintains several high value and commonly requested features in its
|
||||
own extensions, there are many instances where one may wish to further extend
|
||||
the viewer. Some common use cases include:
|
||||
|
||||
- Adding AI/ML tools and insights
|
||||
- Custom workflows for guided diagnosis
|
||||
- Collecting specific annotations for training data or reports
|
||||
- Authentication and granular permissions
|
||||
- Teleconsultation workflow, image comments, and tracking
|
||||
- Adding surgical templating tools and reports
|
||||
- and many others
|
||||
|
||||
We expose common integration points via [extensions](../extensions/index.md) to
|
||||
make this possible. The viewer and many of our own extensions also offer
|
||||
[configuration][configuration]. For a list of extensions maintained by OHIF,
|
||||
[check out this helpful table](../extensions/index.md#maintained-extensions).
|
||||
|
||||
If you find yourself thinking "I wish the Viewer could do X", and you can't
|
||||
accomplish it with an extension today, create a GitHub issue! We're actively
|
||||
looking for ways to improve our extensibility ^\_^
|
||||
|
||||
[Click here to read more about extensions!](../extensions/index.md)
|
||||
|
||||
## Common Questions
|
||||
|
||||
> When should I use the packaged source `@ohif/viewer` versus building a PWA
|
||||
> from the source?
|
||||
|
||||
...
|
||||
|
||||
> Can I create my own Viewer using Vue.js or Angular.js?
|
||||
|
||||
You can, but you will not be able to leverage as much of the existing code and
|
||||
components. `@ohif/core` could still be used for business logic, and to provide
|
||||
a model for extensions. `@ohif/ui` would then become a guide for the components
|
||||
you would need to recreate.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[monorepo]: https://github.com/OHIF/Viewers/issues/768
|
||||
[viewers-project]: https://github.com/OHIF/Viewers
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
[pwa]: https://developers.google.com/web/progressive-web-apps/
|
||||
[configuration]: ../configuring/index.md
|
||||
[extensions]: ../extensions/index.md
|
||||
[core-github]: https://github.com/OHIF/viewers/platform/core
|
||||
[ui-github]: https://github.com/OHIF/Viewers/tree/master/platform/ui
|
||||
<!-- prettier-ignore-end -->
|
||||
BIN
docs/v2/assets/designs/architecture-diagram
Normal file
BIN
docs/v2/assets/designs/canny-full.fig
Normal file
14
docs/v2/assets/designs/cloud.svg
Normal file
@ -0,0 +1,14 @@
|
||||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 16 16">
|
||||
<defs id="defs3051">
|
||||
<style type="text/css" id="current-color-scheme">
|
||||
.ColorScheme-Text {
|
||||
color:#4d4d4d;
|
||||
}
|
||||
</style>
|
||||
</defs>
|
||||
<path
|
||||
style="fill:currentColor;fill-opacity:1;stroke:none"
|
||||
d="M 7.5 2 A 4.5 4.5 0 0 0 3 6.5 A 4.5 4.5 0 0 0 3.0527344 7.15625 A 3 3 0 0 0 1 10 A 3 3 0 0 0 4 13 L 11.5 13 A 3.5 3.5 0 0 0 15 9.5 A 3.5 3.5 0 0 0 11.970703 6.0351562 A 4.5 4.5 0 0 0 7.5 2 z M 7.5 3 A 3.5 3.5 0 0 1 11 6.5 A 3.5 3.5 0 0 1 10.949219 7.0644531 A 2.5 2.5 0 0 1 11.5 7 A 2.5 2.5 0 0 1 14 9.5 A 2.5 2.5 0 0 1 11.5 12 L 4 12 A 2 2 0 0 1 2 10 A 2 2 0 0 1 4 8 A 2 2 0 0 1 4.3574219 8.0332031 A 3.5 3.5 0 0 1 4 6.5 A 3.5 3.5 0 0 1 7.5 3 z "
|
||||
id="path4139"
|
||||
class="ColorScheme-Text"/>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 818 B |
BIN
docs/v2/assets/designs/embedded-viewer-diagram
Normal file
BIN
docs/v2/assets/designs/nginx-image-archive.fig
Normal file
9
docs/v2/assets/designs/npm-logo-red.svg
Normal file
@ -0,0 +1,9 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<svg version="1.1" id="npm" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
|
||||
viewBox="0 0 780 250" style="enable-background:new 0 0 780 250;" xml:space="preserve">
|
||||
<style type="text/css">
|
||||
.st0{fill:#C12127;}
|
||||
</style>
|
||||
<path class="st0" d="M240,250h100v-50h100V0H240V250z M340,50h50v100h-50V50z M480,0v200h100V50h50v150h50V50h50v150h50V0H480z
|
||||
M0,200h100V50h50v150h50V0H0V200z"/>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 473 B |
BIN
docs/v2/assets/designs/scope-of-project.fig
Normal file
BIN
docs/v2/assets/designs/user-access-control-request-flow.fig
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BIN
docs/v2/assets/img/WORKFLOW_DEPLOY.png
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|
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BIN
docs/v2/assets/img/WORKFLOW_PR_CHECKS.png
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|
After Width: | Height: | Size: 5.7 KiB |
BIN
docs/v2/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png
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|
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BIN
docs/v2/assets/img/WORKFLOW_RELEASE.png
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|
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BIN
docs/v2/assets/img/architecture-diagram.png
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|
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BIN
docs/v2/assets/img/cornerstone-tools-link.gif
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|
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BIN
docs/v2/assets/img/dialog-example.gif
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|
After Width: | Height: | Size: 118 KiB |
BIN
docs/v2/assets/img/embedded-viewer-diagram.png
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|
After Width: | Height: | Size: 22 KiB |
BIN
docs/v2/assets/img/extensions-diagram.png
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|
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BIN
docs/v2/assets/img/extensions-panel.gif
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|
After Width: | Height: | Size: 178 KiB |
BIN
docs/v2/assets/img/extensions-toolbar-nested.gif
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|
After Width: | Height: | Size: 137 KiB |
BIN
docs/v2/assets/img/extensions-toolbar.gif
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|
After Width: | Height: | Size: 37 KiB |
BIN
docs/v2/assets/img/extensions-viewport.png
Normal file
|
After Width: | Height: | Size: 147 KiB |
BIN
docs/v2/assets/img/homePage.png
Normal file
|
After Width: | Height: | Size: 355 KiB |
BIN
docs/v2/assets/img/jwt-explained.png
Normal file
|
After Width: | Height: | Size: 169 KiB |
BIN
docs/v2/assets/img/keycloak-default-theme.png
Normal file
|
After Width: | Height: | Size: 41 KiB |
BIN
docs/v2/assets/img/keycloak-ohif-theme.png
Normal file
|
After Width: | Height: | Size: 884 KiB |
BIN
docs/v2/assets/img/lesionTracker.png
Normal file
|
After Width: | Height: | Size: 440 KiB |
BIN
docs/v2/assets/img/loading-study.gif
Normal file
|
After Width: | Height: | Size: 20 MiB |
187
docs/v2/assets/img/locizeSponsor.svg
Normal file
|
After Width: | Height: | Size: 59 KiB |
BIN
docs/v2/assets/img/modal-example.gif
Normal file
|
After Width: | Height: | Size: 230 KiB |
BIN
docs/v2/assets/img/netlify-drop.gif
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|
After Width: | Height: | Size: 994 KiB |
BIN
docs/v2/assets/img/nginx-image-archive.png
Normal file
|
After Width: | Height: | Size: 27 KiB |
BIN
docs/v2/assets/img/notification-example.gif
Normal file
|
After Width: | Height: | Size: 99 KiB |
BIN
docs/v2/assets/img/open-graph.png
Normal file
|
After Width: | Height: | Size: 21 KiB |
BIN
docs/v2/assets/img/scope-of-project.png
Normal file
|
After Width: | Height: | Size: 60 KiB |
BIN
docs/v2/assets/img/services.png
Normal file
|
After Width: | Height: | Size: 21 KiB |
BIN
docs/v2/assets/img/surge-deploy.gif
Normal file
|
After Width: | Height: | Size: 371 KiB |
BIN
docs/v2/assets/img/ui-services.png
Normal file
|
After Width: | Height: | Size: 26 KiB |
BIN
docs/v2/assets/img/user-access-control-request-flow.png
Normal file
|
After Width: | Height: | Size: 40 KiB |
BIN
docs/v2/assets/img/viewer.png
Normal file
|
After Width: | Height: | Size: 662 KiB |
BIN
docs/v2/assets/img/worklist.png
Normal file
|
After Width: | Height: | Size: 104 KiB |
54
docs/v2/book.json
Normal file
@ -0,0 +1,54 @@
|
||||
{
|
||||
"title": "OHIF",
|
||||
"description": "Documentation for the OHIF framework",
|
||||
"gitbook": ">3.0.0",
|
||||
"plugins": [
|
||||
"edit-link",
|
||||
"theme-cornerstone",
|
||||
"-fontsettings",
|
||||
"github",
|
||||
"ga",
|
||||
"sitemap",
|
||||
"anchors",
|
||||
"versions"
|
||||
],
|
||||
"pluginsConfig": {
|
||||
"edit-link": {
|
||||
"base": "https://github.com/OHIF/Viewers/edit/master/docs",
|
||||
"label": "Edit This Page"
|
||||
},
|
||||
"github": {
|
||||
"url": "https://github.com/OHIF/Viewers"
|
||||
},
|
||||
"ga": {
|
||||
"token": "UA-110573590-2"
|
||||
},
|
||||
"sitemap": {
|
||||
"hostname": "https://docs.ohif.org"
|
||||
},
|
||||
"versions": {
|
||||
"gitbookConfigURL": "https://raw.githubusercontent.com/OHIF/Viewers/master/docs/book.json",
|
||||
"options": [
|
||||
{
|
||||
"value": "https://docs.ohif.org/history/v1/",
|
||||
"text": "Version 1.0.0 (Meteor)"
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/history/v2/",
|
||||
"text": "Version 2.0.0",
|
||||
"selected": true
|
||||
},
|
||||
{
|
||||
"value": "https://docs.ohif.org/",
|
||||
"text": "Version 3.0.0"
|
||||
}
|
||||
]
|
||||
}
|
||||
},
|
||||
"links": {
|
||||
"sharing": {
|
||||
"facebook": false,
|
||||
"twitter": false
|
||||
}
|
||||
}
|
||||
}
|
||||
170
docs/v2/configuring/data-source.md
Normal file
@ -0,0 +1,170 @@
|
||||
# Data Source
|
||||
|
||||
After following the steps outlined in
|
||||
[Getting Started](./../development/getting-started.md), you'll notice that the
|
||||
OHIF Viewer has data for several studies and their images. You didn't add this
|
||||
data, so where is it coming from?
|
||||
|
||||
By default, the viewer is configured to connect to a remote server hosted by the
|
||||
nice folks over at [dcmjs.org][dcmjs-org]. While convenient for getting started,
|
||||
the time may come when you want to develop using your own data either locally or
|
||||
remotely.
|
||||
|
||||
## Set up a local DICOM server
|
||||
|
||||
> ATTENTION! Already have a remote or local server? Skip to the
|
||||
> [configuration section](#configuration-learn-more) below.
|
||||
|
||||
While the OHIF Viewer can work with any data source, the easiest to configure
|
||||
are the ones that follow the [DICOMWeb][dicom-web] spec.
|
||||
|
||||
1. Choose and install an Image Archive
|
||||
2. Upload data to your archive (e.g. with DCMTK's [storescu][storescu] or your
|
||||
archive's web interface)
|
||||
3. Keep the server running
|
||||
|
||||
For our purposes, we will be using `Orthanc`, but you can see a list of
|
||||
[other Open Source options](#open-source-dicom-image-archives) below.
|
||||
|
||||
### Requirements
|
||||
|
||||
- Docker
|
||||
- [Docker for Mac](https://docs.docker.com/docker-for-mac/)
|
||||
- [Docker for Windows (recommended)](https://docs.docker.com/docker-for-windows/)
|
||||
- [Docker Toolbox for Windows](https://docs.docker.com/toolbox/toolbox_install_windows/)
|
||||
|
||||
_Not sure if you have `docker` installed already? Try running `docker --version`
|
||||
in command prompt or terminal_
|
||||
|
||||
> If you are using `Docker Toolbox` you need to change the _PROXY_DOMAIN_
|
||||
> parameter in _platform/viewer/package.json_ to http://192.168.99.100:8042 or
|
||||
> the ip docker-machine ip throws. This is the value [`WebPack`][webpack-proxy]
|
||||
> uses to proxy requests
|
||||
|
||||
### Running Orthanc
|
||||
|
||||
_Start Orthanc:_
|
||||
|
||||
```bash
|
||||
# Runs orthanc so long as window remains open
|
||||
yarn run orthanc:up
|
||||
```
|
||||
|
||||
_Upload your first Study:_
|
||||
|
||||
1. Navigate to
|
||||
[Orthanc's web interface](http://localhost:8042/app/explorer.html) at
|
||||
`http://localhost:8042/app/explorer.html` in a web browser.
|
||||
2. In the top right corner, click "Upload"
|
||||
3. Click "Select files to upload..." and select one or more DICOM files
|
||||
4. Click "Start the upload"
|
||||
|
||||
#### Orthanc: Learn More
|
||||
|
||||
You can see the `docker-compose.yml` file this command runs at
|
||||
[`<project-root>/.docker/Nginx-Orthanc/`][orthanc-docker-compose], and more on
|
||||
Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
|
||||
|
||||
### Connecting to Orthanc
|
||||
|
||||
Now that we have a local Orthanc instance up and running, we need to configure
|
||||
our web application to connect to it. Open a new terminal window, navigate to
|
||||
this repository's root directory, and run:
|
||||
|
||||
```bash
|
||||
# If you haven't already, enable yarn workspaces
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
# Restore dependencies
|
||||
yarn install
|
||||
|
||||
# Run our dev command, but with the local orthanc config
|
||||
yarn run dev:orthanc
|
||||
```
|
||||
|
||||
#### Configuration: Learn More
|
||||
|
||||
> For more configuration fun, check out the
|
||||
> [Essentials Configuration](./index.md) guide.
|
||||
|
||||
Let's take a look at what's going on under the hood here. `yarn run dev:orthanc`
|
||||
is running the `dev:orthanc` script in our project's `package.json`. That script
|
||||
is:
|
||||
|
||||
```js
|
||||
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
|
||||
```
|
||||
|
||||
- `cross-env` sets three environment variables
|
||||
- PROXY_TARGET: `/dicom-web`
|
||||
- PROXY_DOMAIN: `http://localhost:8042`
|
||||
- APP_CONFIG: `config/docker_nginx-orthanc.js`
|
||||
- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
|
||||
file. It will watch for changes and update as we develop.
|
||||
|
||||
`PROXY_TARGET` and `PROXY_DOMAIN` tell our development server to proxy requests
|
||||
to `Orthanc`. This allows us to bypass CORS issues that normally occur when
|
||||
requesting resources that live at a different domain.
|
||||
|
||||
The `APP_CONFIG` value tells our app which file to load on to `window.config`.
|
||||
By default, our app uses the file at
|
||||
`<project-root>/platform/viewer/public/config/default.js`. Here is what that
|
||||
configuration looks like:
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'Orthanc',
|
||||
wadoUriRoot: 'http://localhost:8899/wado',
|
||||
qidoRoot: 'http://localhost:8899/dicom-web',
|
||||
wadoRoot: 'http://localhost:8899/dicom-web',
|
||||
qidoSupportsIncludeField: false,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
To learn more about how you can configure the OHIF Viewer, check out our
|
||||
[Configuration Guide](./index.md).
|
||||
|
||||
## Open Source DICOM Image Archives
|
||||
|
||||
Our example uses `Orthanc`, but there are a lot of options available to you.
|
||||
Here are some of the more popular ones:
|
||||
|
||||
| Archive | Installation |
|
||||
| --------------------------------------------- | ---------------------------------- |
|
||||
| [DCM4CHEE Archive 5.x][dcm4chee] | [W/ Docker][dcm4chee-docker] |
|
||||
| [Orthanc][orthanc] | [W/ Docker][orthanc-docker] |
|
||||
| [DICOMcloud][dicomcloud] (**DICOM Web only**) | [Installation][dicomcloud-install] |
|
||||
| [OsiriX][osirix] (**Mac OSX only**) | Desktop Client |
|
||||
| [Horos][horos] (**Mac OSX only**) | Desktop Client |
|
||||
|
||||
_Feel free to make a Pull Request if you want to add to this list._
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[dcmjs-org]: https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado
|
||||
[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
|
||||
[storescu]: http://support.dcmtk.org/docs/storescu.html
|
||||
[webpack-proxy]: https://webpack.js.org/configuration/dev-server/#devserverproxy
|
||||
[orthanc-docker-compose]: https://github.com/OHIF/Viewers/tree/master/.docker/Nginx-Orthanc
|
||||
<!-- Archives -->
|
||||
[dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
|
||||
[dcm4chee-docker]: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker
|
||||
[orthanc]: https://www.orthanc-server.com/
|
||||
[orthanc-docker]: http://book.orthanc-server.com/users/docker.html
|
||||
[dicomcloud]: https://github.com/DICOMcloud/DICOMcloud
|
||||
[dicomcloud-install]: https://github.com/DICOMcloud/DICOMcloud#running-the-code
|
||||
[osirix]: http://www.osirix-viewer.com/
|
||||
[horos]: https://www.horosproject.org/
|
||||
<!-- prettier-ignore-end -->
|
||||
126
docs/v2/configuring/index.md
Normal file
@ -0,0 +1,126 @@
|
||||
# Configuration
|
||||
|
||||
> This step assumes you have an imaging archive. If you need assistance setting
|
||||
> one up, check out the [`Data Source` Guide](./data-source.md) or a deployment
|
||||
> recipe that contains an open Image Archive
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Configuration Files](#configuration-files)
|
||||
- [Environment Variables](#environment-variables)
|
||||
- [How do I configure my project?](#how-do-i-configure-my-project)
|
||||
|
||||
## Overview
|
||||
|
||||
### Configuration Files
|
||||
|
||||
The configuration for our viewer is in the `<root>platform/viewer/public/config`
|
||||
directory. Our build process knows which configuration file to use based on the
|
||||
`APP_CONFIG` environment variable. By default, its value is
|
||||
[`config/default.js`][default-config]. The majority of the viewer's features,
|
||||
and registered extension's features, are configured using this file.
|
||||
|
||||
**Embedded Use Note:**
|
||||
|
||||
Alternatively, when using the `umd` bundle for embedded use cases, these same
|
||||
values are what you'll pass to `installViewer` method:
|
||||
|
||||
`OHIFStandaloneViewer.installViewer(window.config)`
|
||||
|
||||
### Environment Variables
|
||||
|
||||
We use environment variables at build and dev time to change the Viewer's
|
||||
behavior. We can update the `HTML_TEMPLATE` to easily change which extensions
|
||||
are registered, and specify a different `APP_CONFIG` to connect to an
|
||||
alternative data source (or even specify different default hotkeys).
|
||||
|
||||
| Environment Variable | Description | Default |
|
||||
| -------------------- | -------------------------------------------------------------------------------------------------- | ------------------- |
|
||||
| `HTML_TEMPLATE` | Which [HTML template][html-templates] to use as our web app's entry point. Specific to PWA builds. | `index.html` |
|
||||
| `PUBLIC_URL` | The route relative to the host that the app will be served from. Specific to PWA builds. | `/` |
|
||||
| `APP_CONFIG` | Which [configuration file][config-file] to copy to output as `app-config.js` | `config/default.js` |
|
||||
| `PROXY_TARGET` | When developing, proxy requests that match this pattern to `PROXY_DOMAIN` | `undefined` |
|
||||
| `PROXY_DOMAIN` | When developing, proxy requests from `PROXY_TARGET` to `PROXY_DOMAIN` | `undefined` |
|
||||
|
||||
## How do I configure my project?
|
||||
|
||||
The simplest way is to update the existing default config:
|
||||
|
||||
_/platform/viewer/public/config/default.js_
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
The configuration can also be written as a JS Function in case you need to inject dependencies like external services:
|
||||
|
||||
```js
|
||||
window.config = ({ servicesManager } = {}) => {
|
||||
const { UIDialogService } = servicesManager.services;
|
||||
return {
|
||||
cornerstoneExtensionConfig: {
|
||||
tools: {
|
||||
ArrowAnnotate: {
|
||||
configuration: {
|
||||
getTextCallback: (callback, eventDetails) => UIDialogService.create({...
|
||||
}
|
||||
}
|
||||
},
|
||||
},
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
};
|
||||
```
|
||||
|
||||
You can also create a new config file and specify its path relative to the build
|
||||
output's root by setting the `APP_CONFIG` environment variable. You can set the
|
||||
value of this environment variable a few different ways:
|
||||
|
||||
- ~[Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)~
|
||||
- Previous `react-scripts` functionality that we need to duplicate with
|
||||
`dotenv-webpack`
|
||||
- ~[Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)~
|
||||
- Previous `react-scripts` functionality that we need to duplicate with
|
||||
`dotenv-webpack`
|
||||
- Using the `cross-env` package in an npm script:
|
||||
- `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
|
||||
|
||||
After updating the configuration, `yarn run build` to generate updated build
|
||||
output.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[default-config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js
|
||||
[html-templates]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/html-templates
|
||||
[config-files]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
|
||||
<!-- prettier-ignore-end -->
|
||||
@ -0,0 +1,71 @@
|
||||
# Google Cloud Healthcare
|
||||
|
||||
> The [Google Cloud Healthcare API](https://cloud.google.com/healthcare/) is a
|
||||
> powerful option for storing medical imaging data in the cloud.
|
||||
|
||||
An alternative to deploying your own PACS is to use a software-as-a-service
|
||||
provider such as Google Cloud. The Cloud Healthcare API promises to be a
|
||||
scalable, secure, cost effective image storage solution for those willing to
|
||||
store their data in the cloud. It offers an
|
||||
[almost-entirely complete DICOMWeb API](https://cloud.google.com/healthcare/docs/dicom)
|
||||
which requires tokens generated via the
|
||||
[OAuth 2.0 Sign In flow](https://developers.google.com/identity/sign-in/web/sign-in).
|
||||
Images can even be transcoded on the fly if this is desired.
|
||||
|
||||
## Setup a Google Cloud Healthcare Project
|
||||
|
||||
- Create a Google Cloud account
|
||||
- Create a project in Google Cloud
|
||||
- Enable the [Cloud Healthcare API](https://cloud.google.com/healthcare/) for
|
||||
your project.
|
||||
- (Optional): Create a Dataset and Data Store for storing your DICOM data
|
||||
- Enable the
|
||||
[Cloud Resource Manager API](https://cloud.google.com/resource-manager/) for
|
||||
your project.
|
||||
- _Note:_ If you are having trouble finding the APIs, use the search box at
|
||||
the top of the Cloud console.
|
||||
- Go to APIs & Services > Credentials to create an OAuth Consent screen and fill
|
||||
in your application details.
|
||||
- Under Scopes for Google APIs, click "manually paste scopes".
|
||||
- Add the following scopes:
|
||||
- `https://www.googleapis.com/auth/cloudplatformprojects.readonly`
|
||||
- `https://www.googleapis.com/auth/cloud-healthcare`
|
||||
- Go to APIs & Services > Credentials to create a new set of credentials:
|
||||
|
||||
- Choose the "Web Application" type
|
||||
- Set up an
|
||||
[OAuth 2.0 Client ID](https://support.google.com/cloud/answer/6158849?hl=en)
|
||||
- Add your domain (e.g. `http://localhost:3000`) to Authorized JavaScript
|
||||
origins.
|
||||
- Add your domain, plus `callback` (e.g. `http://localhost:3000/callback`) to
|
||||
Authorized Redirect URIs.
|
||||
- Save your Client ID for later.
|
||||
|
||||
- (Optional): Enable Public Datasets that are being hosted by Google:
|
||||
https://cloud.google.com/healthcare/docs/resources/public-datasets/
|
||||
|
||||
## Run the viewer with your OAuth Client ID
|
||||
|
||||
1. Open the `config/google.js` file and change `YOURCLIENTID` to your Client ID
|
||||
value.
|
||||
1. Run the OHIF Viewer using the config/google.js configuration file
|
||||
|
||||
```bash
|
||||
cd OHIFViewer
|
||||
yarn install
|
||||
APP_CONFIG=config/google.js yarn run dev
|
||||
```
|
||||
|
||||
## Running via Docker
|
||||
|
||||
The OHIF Viewer Docker container can be connected to Google Cloud Healthcare by
|
||||
providing a Client ID at runtime. This is a very simple method to get up and
|
||||
running.
|
||||
|
||||
1. Install Docker (https://www.docker.com/)
|
||||
1. Run the Docker container, providing a Client ID as an environment variable.
|
||||
Client IDs look like `xyz.apps.googleusercontent.com`.
|
||||
|
||||
```bash
|
||||
docker run --env CLIENT_ID=$CLIENT_ID --publish 5000:80 ohif/viewer:latest
|
||||
```
|
||||
4
docs/v2/deployment/_embedded-viewer-diagram.md
Normal file
@ -0,0 +1,4 @@
|
||||
<div style="text-align: center;">
|
||||
<img src="/assets/img/embedded-viewer-diagram.png" alt="Embedded Viewer Diagram" style="margin: 0 auto;" />
|
||||
<div><i>embedded viewer diagram</i></div>
|
||||
</div>
|
||||
4
docs/v2/deployment/_nginx-image-archive-diagram.md
Normal file
@ -0,0 +1,4 @@
|
||||
<div style="text-align: center;">
|
||||
<img src="/assets/img/nginx-image-archive.png" alt="request flow example" style="margin: 0 auto;" />
|
||||
<div><i>simplified request flow diagram</i></div>
|
||||
</div>
|
||||
4
docs/v2/deployment/_user-account-control-flow-diagram.md
Normal file
@ -0,0 +1,4 @@
|
||||
<div style="text-align: center;">
|
||||
<img src="/assets/img/user-access-control-request-flow.png" alt="request flow example" style="margin: 0 auto;" />
|
||||
<div><i>simplified request flow diagram</i></div>
|
||||
</div>
|
||||
305
docs/v2/deployment/index.md
Normal file
@ -0,0 +1,305 @@
|
||||
# Deployment
|
||||
|
||||
The OHIF Viewer can be embedded in other web applications via it's [packaged
|
||||
script source][viewer-npm], or served up as a stand-alone PWA ([progressive web
|
||||
application][pwa-url]) by building and hosting a collection of static assets. In
|
||||
either case, you will need to configure your instance of the Viewer so that it
|
||||
can connect to your data source (the database or PACS that provides the data
|
||||
your Viewer will display).
|
||||
|
||||
## Overview
|
||||
|
||||
Our goal is to make deployment as simple and painless as possible; however,
|
||||
there is an inherent amount of complexity in configuring and deploying web
|
||||
applications. If you find yourself a little lost, please don't hesitate to
|
||||
[reach out for help](/help.md)
|
||||
|
||||
## Deployment Scenarios
|
||||
|
||||
### Embedded Viewer
|
||||
|
||||
The quickest and easiest way to get the OHIF Viewer up and running is to embed
|
||||
it into an existing web application. It allows us to forego a "build step", and
|
||||
add a powerful medical imaging viewer to an existing web page using only a few
|
||||
include tags.
|
||||
|
||||
- Read more about it here: [Embedded Viewer](./recipes/embedded-viewer.md)
|
||||
- And check out our [live demo on CodeSandbox][code-sandbox]
|
||||
|
||||
{% include "./_embedded-viewer-diagram.md" %}
|
||||
|
||||
### Stand-alone Viewer
|
||||
|
||||
Deploying the OHIF Viewer as a stand-alone web application provides many
|
||||
benefits, but comes at the cost of time and complexity. Some benefits include:
|
||||
|
||||
_Today:_
|
||||
|
||||
- Leverage [extensions](/extensions/index.md) to drop-in powerful new features
|
||||
- Add routes and customize the viewer's workflow
|
||||
- Finer control over styling and whitelabeling
|
||||
|
||||
_In the future:_
|
||||
|
||||
- The ability to package the viewer for [App Store distribution][app-store]
|
||||
- Leverage `service-workers` for offline support and speed benefits from caching
|
||||
|
||||
#### Hosted Static Assets
|
||||
|
||||
At the end of the day, a production OHIF Viewer instance is a collection of
|
||||
HTML, CSS, JS, Font Files, and Images. We "build" those files from our
|
||||
`source code` with configuration specific to our project. We then make those
|
||||
files publicly accessible by hosting them on a Web Server.
|
||||
|
||||
If you have not deployed a web application before, this may be a good time to
|
||||
[reach out for help](/help.md), as these steps assume prior web development and
|
||||
deployment experience.
|
||||
|
||||
##### Part 1 - Build Production Assets
|
||||
|
||||
"Building", or creating, the files you will need is the same regardless of the
|
||||
web host you choose. You can find detailed instructions on how to configure and
|
||||
build the OHIF Viewer in our
|
||||
["Build for Production" guide](./recipes/build-for-production.md).
|
||||
|
||||
##### Part 2 - Host Your App
|
||||
|
||||
There are a lot of [benefits to hosting static assets][host-static-assets] over
|
||||
dynamic content. You can find instructions on how to host your build's output
|
||||
via one of these guides:
|
||||
|
||||
_Drag-n-drop_
|
||||
|
||||
- [Netlify: Drop](/deployment/recipes/static-assets.md#netlify-drop)
|
||||
|
||||
_Easy_
|
||||
|
||||
- [Surge.sh](/deployment/recipes/static-assets.md#surgesh)
|
||||
- [GitHub Pages](/deployment/recipes/static-assets.md#github-pages)
|
||||
|
||||
_Advanced_
|
||||
|
||||
- [AWS S3 + Cloudfront](/deployment/recipes/static-assets.md#aws-s3--cloudfront)
|
||||
- [GCP + Cloudflare](/deployment/recipes/static-assets.md#gcp--cloudflare)
|
||||
- [Azure](/deployment/recipes/static-assets.md#azure)
|
||||
|
||||
## Data
|
||||
|
||||
The OHIF Viewer is able to connect to any data source that implements the [DICOM
|
||||
Web Standard][dicom-web-standard]. [DICOM Web][dicom-web] refers to RESTful
|
||||
DICOM Services -- a recently standardized set of guidelines for exchanging
|
||||
medical images and imaging metadata over the internet. Not all archives fully
|
||||
support it yet, but it is gaining wider adoption.
|
||||
|
||||
### Configure Connection
|
||||
|
||||
If you have an existing archive and intend to host the OHIF Viewer at the same
|
||||
domain name as your archive, then connecting the two is as simple as following
|
||||
the steps layed out in our
|
||||
[Configuration Essentials Guide](./../configuring/index.md).
|
||||
|
||||
#### What if I don't have an imaging archive?
|
||||
|
||||
We provide some guidance on configuring a local image archive in our
|
||||
[Data Source Essentials](./../configuring/data-source.md) guide. Hosting an
|
||||
archive remotely is a little trickier. You can check out some of our
|
||||
[advanced recipes](#recipes) for modeled setups that may work for you.
|
||||
|
||||
#### What if I intend to host the OHIF Viewer at a different domain?
|
||||
|
||||
There are two important steps to making sure this setup works:
|
||||
|
||||
1. Your Image Archive needs to be exposed, in some way, to the open web. This
|
||||
can be directly, or through a `reverse proxy`, but the Viewer needs _some
|
||||
way_ to request it's data.
|
||||
2. \* Your Image Archive needs to have appropriate CORS (Cross-Origin Resource
|
||||
Sharing) Headers
|
||||
|
||||
> \* Cross-Origin Resource Sharing (CORS) is a mechanism that uses additional
|
||||
> HTTP headers to tell a browser to let a web application running at one origin
|
||||
> (domain) have permission to access selected resources from a server at a
|
||||
> different origin. - [MDN Web Docs: Web - Http - CORS][cors]
|
||||
|
||||
Most image archives do not provide either of these features "out of the box".
|
||||
It's common to use IIS, Nginx, or Apache to route incoming requests and append
|
||||
appropriate headers. You can find an example of this setup in our
|
||||
[Nginx + Image Archive Deployment Recipe](./recipes/nginx--image-archive.md).
|
||||
|
||||
#### What if my archive doesn't support DicomWeb?
|
||||
|
||||
It's possible to supply all Study data via JSON format, in the event you do not have a DicomWeb endpoint.
|
||||
You can host all of the relevant files on any web accessible server (Amazon S3, Azure Blob Storage, Local file server etc.)
|
||||
|
||||
This JSON is supplied via the '?url=' query parameter.
|
||||
It should reference an endpoint that returns **application/json** formatted text.
|
||||
|
||||
If you do not have an API, you can simply return a text file containing the JSON from any web server.
|
||||
|
||||
|
||||
You tell the OHIF viewer to use JSON by appending the `'?url='` query to the `/Viewer` route:
|
||||
|
||||
eg. `https://my-test-ohif-server/viewer?url=https://my-json-server/study-uid.json`
|
||||
|
||||
The returned JSON object must contain a single root object with a 'studies' array.
|
||||
|
||||
|
||||
*Sample JSON format:*
|
||||
```JSON
|
||||
{
|
||||
"studies": [
|
||||
{
|
||||
"StudyInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.78",
|
||||
"StudyDescription": "BRAIN SELLA",
|
||||
"StudyDate": "20010108",
|
||||
"StudyTime": "120022",
|
||||
"PatientName": "MISTER^MR",
|
||||
"PatientId": "832040",
|
||||
"series": [
|
||||
{
|
||||
"SeriesDescription": "SAG T-1",
|
||||
"SeriesInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.121",
|
||||
"SeriesNumber": 2,
|
||||
"SeriesDate": "20010108",
|
||||
"SeriesTime": "120318",
|
||||
"Modality": "MR",
|
||||
"instances": [
|
||||
{
|
||||
"metadata": {
|
||||
"Columns": 512,
|
||||
"Rows": 512,
|
||||
"InstanceNumber": 3,
|
||||
"AcquisitionNumber": 0,
|
||||
"PhotometricInterpretation": "MONOCHROME2",
|
||||
"BitsAllocated": 16,
|
||||
"BitsStored": 16,
|
||||
"PixelRepresentation": 1,
|
||||
"SamplesPerPixel": 1,
|
||||
"PixelSpacing": [0.390625, 0.390625],
|
||||
"HighBit": 15,
|
||||
"ImageOrientationPatient": [0,1,0,0,0,-1],
|
||||
"ImagePositionPatient": [11.600000,-92.500000, 98.099998],
|
||||
"FrameOfReferenceUID": "1.2.840.113619.2.5.1762583153.223134.978956938.470",
|
||||
"ImageType": ["ORIGINAL","PRIMARY","OTHER"],
|
||||
"Modality": "MR",
|
||||
"SOPInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.124",
|
||||
"SeriesInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.121",
|
||||
"StudyInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.78"
|
||||
},
|
||||
"url": "dicomweb://s3.amazonaws.com/lury/MRStudy/1.2.840.113619.2.5.1762583153.215519.978957063.124.dcm"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
```
|
||||
More info on this JSON format can be found here [Issue #1500](https://github.com/OHIF/Viewers/issues/1500)
|
||||
|
||||
|
||||
**Implementation Notes:**
|
||||
|
||||
1. When hosting the viewer, you will also need to host a /viewer route on the server - or the browser may not be able to find the route.
|
||||
2. For each instance url (dicom object) in the returned JSON, you must prefix the `url` with `dicomweb:` in order for the cornerstone image loader to retrieve it correctly.
|
||||
eg. `https://image-server/my-image.dcm` ---> `dicomweb:https://image-server/my-image.dcm`
|
||||
3. The JSON format above is compatible with >= v3.7.8 of the application. Older versions of the viewer used a different JSON format. As of 20/04/20 the public [https://viewer.ohif.org/] is a pre 3.0 version that does not support this format yet.
|
||||
4. The JSON format is case-sensitive. Please ensure you have matched casing with the naturalised Dicom format referenced in [Issue #1500](https://github.com/OHIF/Viewers/issues/1500).
|
||||
|
||||
*CORS Issues (Cross-Origin Resource Sharing)*
|
||||
|
||||
If you host a JSON API or Images on a different domain from the the app itself, you will likely have CORS issues. This will also happen when testing from Localhost and reaching out to remote servers.
|
||||
Even if the domain is the same, different ports, subdomains or protocols (https vs http) will also cause CORS errors.
|
||||
You will to need add a configuration on each server hosting these assets to allow your App server origin.
|
||||
|
||||
For example:
|
||||
|
||||
Lets assume your application is hosted on `https://my-ohif-server.com`.
|
||||
|
||||
Your JSON API is hosted on `https://my-json-api.aws.com`
|
||||
|
||||
And your images are stored on Amazon S3 at `https://my-s3-bucket.aws.com`
|
||||
|
||||
When you first start your application, browsing to `https://my-ohif-server.com/viewer?url=https://my-json-api.aws.com/api/my-json-study-info.json`, you will likely get a CORS error in the browser console as it tries to connect to `https://my-json-api.aws.com`.
|
||||
|
||||
Adding a setting on the JSON server to allow the CORS origin = `https://my-ohif-server.com` should solve this.
|
||||
|
||||
Next, you will likely get a similar CORS error, as the browser tries to go to `https://my-s3-bucket.aws.com`.
|
||||
You will need to go to the S3 bucket configuration, and add a CORS setting to allow origin = `https://my-ohif-server.com`.
|
||||
|
||||
Essentially, whenever the application connects to a remote resource, you will need to add the applications url to the allowed CORS Origins on that resource. Adding an origin similar to https://localhost:3000 will also allow for local testing.
|
||||
|
||||
|
||||
### Securing Your Data
|
||||
|
||||
> Feeling lost? Securing your data is important, and it can be hard to tell if
|
||||
> you've gotten it right. Don't hesitate to work with professional auditors, or
|
||||
> [enlist help from experts](./../help.md).
|
||||
|
||||
The OHIF Viewer can be configured to work with authorization servers that
|
||||
support one or more of the OpenID-Connect authorization flows. The Viewer finds
|
||||
it's OpenID-Connect settings on the `oidc` configuration key. You can set these
|
||||
values following the instructions laid out in the
|
||||
[Configuration Essentials Guide](./../configuring/index.md).
|
||||
|
||||
_Example OpenID-Connect Settings:_
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
...
|
||||
oidc: [
|
||||
{
|
||||
// ~ REQUIRED
|
||||
// Authorization Server URL
|
||||
authority: 'http://127.0.0.1/auth/realms/ohif',
|
||||
client_id: 'ohif-viewer',
|
||||
redirect_uri: 'http://127.0.0.1/callback', // `OHIFStandaloneViewer.js`
|
||||
response_type: 'code', // "Authorization Code Flow"
|
||||
scope: 'openid', // email profile openid
|
||||
// ~ OPTIONAL
|
||||
post_logout_redirect_uri: '/logout-redirect.html',
|
||||
},
|
||||
],
|
||||
}
|
||||
```
|
||||
|
||||
You can find an example of this setup in our
|
||||
[User Account Control Deployment Recipe](./recipes/user-account-control.md).
|
||||
|
||||
#### Choosing a Flow for the Viewer
|
||||
|
||||
In general, we recommend using the "Authorization Code Flow" ( [see
|
||||
`response_type=code` here][code-flows]); however, the "Implicit Flow" ( [see
|
||||
`response_type=token` here][code-flows]) can work if additonal precautions are
|
||||
taken. If the flow you've chosen produces a JWT Token, it's validity can be used
|
||||
to secure access to your Image Archive as well.
|
||||
|
||||
### Recipes
|
||||
|
||||
We've included a few recipes for common deployment scenarios. There are many,
|
||||
many possible configurations, so please don't feel limited to these setups.
|
||||
Please feel free to suggest or contribute your own recipes.
|
||||
|
||||
- Script Include
|
||||
- [Embedding the Viewer](./recipes/embedded-viewer.md)
|
||||
- Stand-Alone
|
||||
- [Build for Production](./recipes/build-for-production.md)
|
||||
- [Static](./recipes/static-assets.md)
|
||||
- [Nginx + Image Archive](./recipes/nginx--image-archive.md)
|
||||
- [User Account Control](./recipes/user-account-control.md)
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
[pwa-url]: https://developers.google.com/web/progressive-web-apps/
|
||||
[static-assets-url]: https://www.maxcdn.com/one/visual-glossary/static-content/
|
||||
[app-store]: https://medium.freecodecamp.org/i-built-a-pwa-and-published-it-in-3-app-stores-heres-what-i-learned-7cb3f56daf9b
|
||||
[dicom-web-standard]: https://www.dicomstandard.org/dicomweb/
|
||||
[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
|
||||
[host-static-assets]: https://www.netlify.com/blog/2016/05/18/9-reasons-your-site-should-be-static/
|
||||
[cors]: https://developer.mozilla.org/en-US/docs/Web/HTTP/CORS
|
||||
[code-flows]: https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660
|
||||
[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
|
||||
<!-- prettier-ignore-end -->
|
||||
135
docs/v2/deployment/recipes/build-for-production.md
Normal file
@ -0,0 +1,135 @@
|
||||
# Build for Production
|
||||
|
||||
> If you've already followed the
|
||||
> ["Getting Started" Guide](/development/getting-started.md), you can skip ahead
|
||||
> to [Configuration](#configuration)
|
||||
|
||||
## Overview
|
||||
|
||||
### Build Machine Requirements
|
||||
|
||||
- [Node.js & NPM](https://nodejs.org/en/download/)
|
||||
- [Yarn](https://yarnpkg.com/lang/en/docs/install/)
|
||||
- [Git](https://www.atlassian.com/git/tutorials/install-git)
|
||||
|
||||
### Getting the Code
|
||||
|
||||
_With Git:_
|
||||
|
||||
```bash
|
||||
# Clone the remote repository to your local machine
|
||||
git clone https://github.com/OHIF/Viewers.git
|
||||
```
|
||||
|
||||
More on: _[`git clone`](https://git-scm.com/docs/git-clone),
|
||||
[`git checkout`](https://git-scm.com/docs/git-checkout)_
|
||||
|
||||
_From .zip:_
|
||||
|
||||
[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/master.zip)
|
||||
|
||||
### Restore Dependencies & Build
|
||||
|
||||
Open your terminal, and navigate to the directory containing the source files.
|
||||
Next run these commands:
|
||||
|
||||
```js
|
||||
// If you haven't already, enable yarn workspaces
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
// Restore dependencies
|
||||
yarn install
|
||||
|
||||
// Build source code for production
|
||||
yarn run build
|
||||
```
|
||||
|
||||
If everything worked as expected, you should have a new `dist/` directory in the
|
||||
project's folder. It should roughly resemble the following:
|
||||
|
||||
```bash
|
||||
<root>platform/viewer/dist/
|
||||
├── app-config.js
|
||||
├── app.bundle.js
|
||||
├── app.css
|
||||
├── index.html
|
||||
├── manifest.json
|
||||
├── service-worker.js
|
||||
└── ...
|
||||
```
|
||||
|
||||
By default, the build output will connect to OHIF's publicly accessible PACS. If
|
||||
this is your first time setting up the OHIF Viewer, it is recommended that you
|
||||
test with these default settings. After testing, you can find instructions on
|
||||
how to configure the project for your own imaging archive below.
|
||||
|
||||
### Configuration
|
||||
|
||||
The configuration for our viewer is in the `<root>platform/viewer/public/config`
|
||||
directory. Our build process knows which configuration file to use based on the
|
||||
`APP_CONFIG` environment variable. By default, its value is
|
||||
[`config/default.js`][default-config]. The majority of the viewer's features,
|
||||
and registered extension's features, are configured using this file.
|
||||
|
||||
The easiest way to apply your own configuration is to modify the `default.js`
|
||||
file. For more advanced cofiguration options, check out our
|
||||
[configuration essentials guide](/configuring/index.md).
|
||||
|
||||
## Next Steps
|
||||
|
||||
### Deploying Build Output
|
||||
|
||||
_Drag-n-drop_
|
||||
|
||||
- [Netlify: Drop](/deployment/recipes/static-assets.md#netlify-drop)
|
||||
|
||||
_Easy_
|
||||
|
||||
- [Surge.sh](/deployment/recipes/static-assets.md#surgesh)
|
||||
- [GitHub Pages](/deployment/recipes/static-assets.md#github-pages)
|
||||
|
||||
_Advanced_
|
||||
|
||||
- [AWS S3 + Cloudfront](/deployment/recipes/static-assets.md#aws-s3--cloudfront)
|
||||
- [GCP + Cloudflare](/deployment/recipes/static-assets.md#gcp--cloudflare)
|
||||
- [Azure](/deployment/recipes/static-assets.md#azure)
|
||||
|
||||
### Testing Build Output Locally
|
||||
|
||||
A quick way to test your build output locally is to spin up a small webserver.
|
||||
You can do this by running the following commands in the `dist/` output
|
||||
directory:
|
||||
|
||||
```js
|
||||
// Install http-server as a globally available package
|
||||
yarn global add http-server
|
||||
|
||||
// Serve the files in our current directory
|
||||
// Accessible at: `http://localhost:8080`
|
||||
http-server
|
||||
```
|
||||
|
||||
### Automating Builds and Deployments
|
||||
|
||||
If you found setting up your environmnent and running all of these steps to be a
|
||||
bit tedious, then you are in good company. Thankfully, there are a large number
|
||||
of tools available to assist with automating tasks like building and deploying
|
||||
web application. For a starting point, check out this repository's own use of:
|
||||
|
||||
- [CircleCI][circleci]: [config.yaml][circleci-config]
|
||||
- [Netlify][netlify]: [netlify.toml][netlify.toml] |
|
||||
[build-deploy-preview.sh][build-deploy-preview.sh]
|
||||
|
||||
## Troubleshooting
|
||||
|
||||
> Issues and resolutions for common GitHub issues will be summarized here
|
||||
|
||||
...
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[circleci]: https://circleci.com/gh/OHIF/Viewers
|
||||
[circleci-config]: https://github.com/OHIF/Viewers/blob/master/.circleci/config.yml
|
||||
[netlify]: https://app.netlify.com/sites/ohif/deploys
|
||||
[netlify.toml]: https://github.com/OHIF/Viewers/blob/master/netlify.toml
|
||||
[build-deploy-preview.sh]: https://github.com/OHIF/Viewers/blob/master/.netlify/build-deploy-preview.sh
|
||||
<!-- prettier-ignore-end -->
|
||||
171
docs/v2/deployment/recipes/embedded-viewer.md
Normal file
@ -0,0 +1,171 @@
|
||||
# Embedded Viewer
|
||||
|
||||
The quickest and easiest way to get the OHIF Viewer up and running is to embed
|
||||
it into an existing web application. It allows us to forego a "build step", and
|
||||
add a powerful medical imaging viewer to an existing web page using only a few
|
||||
include tags. Here's how it works:
|
||||
|
||||
{% include "./../_embedded-viewer-diagram.md" %}
|
||||
|
||||
1. Create a new web page or template that includes the following external
|
||||
dependencies:
|
||||
|
||||
<ul>
|
||||
<li>
|
||||
<a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700&display=swap">
|
||||
<code>Google Font: Roboto</code>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://unpkg.com/@ohif/viewer">
|
||||
<code>@ohif/viewer@latest</code>
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
<ol start="2">
|
||||
<li>Create a JS Object or Function to hold the OHIF Viewer's configuration. Here are some
|
||||
example values that would allow the viewer to hit our public PACS:</li>
|
||||
</ol>
|
||||
|
||||
```js
|
||||
// Set before importing `ohif-viewer` (JS Object)
|
||||
window.config = {
|
||||
// default: '/'
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
To learn more about how you can configure the OHIF Viewer, check out our
|
||||
[Configuration Guide](../../configuring/index.md).
|
||||
|
||||
<ol start="3"><li>
|
||||
Render the viewer in the web page's target <code>div</code>
|
||||
</li></ol>
|
||||
|
||||
```js
|
||||
// Made available by the `@ohif/viewer` script included in step 1
|
||||
var containerId = 'id-of-div-to-render-component-to';
|
||||
var componentRenderedOrUpdatedCallback = function() {
|
||||
console.log('OHIF Viewer rendered/updated');
|
||||
};
|
||||
window.OHIFViewer.installViewer(
|
||||
window.config,
|
||||
containerId,
|
||||
componentRenderedOrUpdatedCallback
|
||||
);
|
||||
```
|
||||
|
||||
You can see a live example of this recipe in [this CodeSandbox][code-sandbox].
|
||||
|
||||
## Add Extensions
|
||||
|
||||
The UMD build of the OHIF Viewer is a "light weight" build that only contains
|
||||
the core extensions required for basic 2D image viewing. It's possible to add
|
||||
other extensions at runtime.
|
||||
|
||||
This only requires us to include a single script tag, and add it using the
|
||||
`extensions` key to our config. In this practical example, we register our
|
||||
popular whole slide microscopy extension:
|
||||
|
||||
```html
|
||||
<script
|
||||
src="https://unpkg.com/@ohif/extension-dicom-microscopy@0.50.5/dist/index.umd.js"
|
||||
crossorigin
|
||||
></script>
|
||||
|
||||
<!-- --->
|
||||
<script>
|
||||
window.config = {
|
||||
// ...
|
||||
extensions: [OHIFExtDicomMicroscopy],
|
||||
};
|
||||
</script>
|
||||
```
|
||||
|
||||
You can see an example of a slide microscopy study in the viewer [with the
|
||||
extension enabled here][whole-slide-ext-demo] ([source code][ext-code-sandbox])
|
||||
and [without it here][whole-slide-base-demo] ([source code][code-sandbox]).
|
||||
|
||||
You can read more about extensions and how to create your own in our
|
||||
[extensions guide](/extensions/index.md).
|
||||
|
||||
#### FAQ
|
||||
|
||||
> I'm having trouble getting this to work. Where can I go for help?
|
||||
|
||||
First, check out this fully functional [CodeSandbox][code-sandbox] example. If
|
||||
you're still having trouble, feel free to search or GitHub issues. Can't find
|
||||
anything related your problem? Create a new one.
|
||||
|
||||
> My application's styles are impacting the OHIF Viewer's look and feel. What
|
||||
> can I do?
|
||||
|
||||
When you include stylesheets and scripts, they are added globally. This has the
|
||||
potential of causing conflicts with other scripts and styles on the page. To
|
||||
prevent this, `embed` the viewer in a new/empty web page. Have that working?
|
||||
Good. Now `embed` that new page using an
|
||||
[`<iframe>` element](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/iframe).
|
||||
|
||||
This should produce the expected result while also protecting your page from any
|
||||
globally defined styles/scripts.
|
||||
|
||||
> We're trying to embed the OHIF Viewer into an existing React App, but seeing
|
||||
> react-dom and react conflicts. What can we do?
|
||||
|
||||
If you are installing OHIF viewer inside another react app, you may use `installViewer` as follows:
|
||||
```
|
||||
import { installViewer } from '@ohif/viewer'
|
||||
|
||||
const ohifViewerConfig = window.config // or set it here
|
||||
const containerId = 'ohif'
|
||||
const componentRenderedOrUpdatedCallback = function() {
|
||||
console.log('OHIF Viewer rendered/updated');
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
installViewer(
|
||||
ohifViewerConfig,
|
||||
containerId,
|
||||
componentRenderedOrUpdatedCallback
|
||||
);
|
||||
}
|
||||
|
||||
render () {
|
||||
...
|
||||
//you can render in any element you wish
|
||||
<AnyTag id={containerId}/>
|
||||
}
|
||||
|
||||
```
|
||||
|
||||
`installViewer` is a convenience method that pulls in some dependencies that may
|
||||
not be compatible with existing `react` apps. `@ohif/viewer` also exports `App`
|
||||
which is a react component that takes the `configuration` outlined above as
|
||||
props. You can use it as a reusable component, and to avoid `react` version
|
||||
conflict issues.
|
||||
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
|
||||
[whole-slide-base-demo]: https://tprch.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2020.1519719354.757
|
||||
[ext-code-sandbox]: https://codesandbox.io/s/viewer-script-tag-microscopy-extension-44unk
|
||||
[whole-slide-ext-demo]: https://44unk.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2448.1519719572.518
|
||||
<!-- prettier-ignore-end -->
|
||||
242
docs/v2/deployment/recipes/nginx--image-archive.md
Normal file
@ -0,0 +1,242 @@
|
||||
# Nginx + Image Archive
|
||||
|
||||
> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
|
||||
> doubt, enlist the help of an expert and conduct proper audits.
|
||||
|
||||
At a certain point, you may want others to have access to your instance of the
|
||||
OHIF Viewer and its medical imaging data. This post covers one of many potential
|
||||
setups that accomplish that. Please note, noticably absent is user account
|
||||
control.
|
||||
|
||||
Do not use this recipe to host sensitive medical data on the open web. Depending
|
||||
on your company's policies, this may be an appropriate setup on an internal
|
||||
network when protected with a server's basic authentication. For a more robust
|
||||
setup, check out our [user account control recipe](./user-account-control.md)
|
||||
that builds on the lessons learned here.
|
||||
|
||||
## Overview
|
||||
|
||||
Our two biggest hurdles when hosting our image archive and web client are:
|
||||
|
||||
- Risks related to exposing our PACS to the netowrk
|
||||
- Cross-Origin Resource Sharing (CORS) requests
|
||||
|
||||
### Handling Web Requests
|
||||
|
||||
We mittigate our first issue by allowing [Nginx][nginx] to handle incoming web
|
||||
requests. Nginx is open source software for web serving, reverse proxying,
|
||||
caching, and more. It's designed for maximum performance and stability --
|
||||
allowing us to more reliably serve content than Orthanc's built-in server can.
|
||||
|
||||
More specifically, we accomplish this by using a
|
||||
[`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy) to retrieve
|
||||
resources from our image archive (Orthanc), and when accessing its web admin.
|
||||
|
||||
> A reverse proxy is a type of proxy server that retrieves resources on behalf
|
||||
> of a client from one or more servers. These resources are then returned to the
|
||||
> client, appearing as if they originated from the proxy server itself.
|
||||
|
||||
### CORS Issues
|
||||
|
||||
Cross-Origin Resource Sharing (CORS) is a mechanism that uses HTTP headers to
|
||||
tell a browser which web applications have permission to access selected
|
||||
resources from a server at a different origin (domain, protocol, port). IE. By
|
||||
default, a Web App located at `http://my-website.com` can't access resources
|
||||
hosted at `http://not-my-website.com`
|
||||
|
||||
We can solve this one of two ways:
|
||||
|
||||
1. Have our Image Archive located at the same domain as our Web App
|
||||
2. Add appropriate `Access-Control-Allow-*` HTTP headers
|
||||
|
||||
**This solution uses the first approach.**
|
||||
|
||||
You can read more about CORS in this Medium article: [Understanding
|
||||
CORS][understanding-cors]
|
||||
|
||||
### Diagram
|
||||
|
||||
This setup allows us to create a setup similar to the one pictured below:
|
||||
|
||||
{% include "./../_nginx-image-archive-diagram.md" %}
|
||||
|
||||
- All web requests are routed through `nginx` on our `OpenResty` image
|
||||
- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
|
||||
- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
|
||||
- All static resources for OHIF Viewer are served up by `nginx` when a matching
|
||||
route for that resource is requested
|
||||
|
||||
## Getting Started
|
||||
|
||||
### Requirements
|
||||
|
||||
- Docker
|
||||
- [Docker for Mac](https://docs.docker.com/docker-for-mac/)
|
||||
- [Docker for Windows](https://docs.docker.com/docker-for-windows/)
|
||||
|
||||
_Not sure if you have `docker` installed already? Try running `docker --version`
|
||||
in command prompt or terminal_
|
||||
|
||||
### Setup
|
||||
|
||||
_Spin Things Up_
|
||||
|
||||
- Navigate to `<project-root>/docker/OpenResty-Orthanc` in your shell
|
||||
- Run `docker-compose up`
|
||||
|
||||
_Upload Your First Study_
|
||||
|
||||
- Navigate to `http://127.0.0.1/pacs-admin`
|
||||
- From the top right, select "Upload"
|
||||
- Click "Select files to upload..." (DICOM)
|
||||
- Click "Start the upload"
|
||||
- Navigate back to `http://127.0.0.1/` to view your studies in the Study List
|
||||
|
||||
### Troubleshooting
|
||||
|
||||
_Exit code 137_
|
||||
|
||||
This means Docker ran out of memory. Open Docker Desktop, go to the `advanced`
|
||||
tab, and increase the amount of Memory available.
|
||||
|
||||
_Cannot create container for service X_
|
||||
|
||||
Use this one with caution: `docker system prune`
|
||||
|
||||
_X is already running_
|
||||
|
||||
Stop running all containers:
|
||||
|
||||
- Win: `docker ps -a -q | ForEach { docker stop $_ }`
|
||||
- Linux: `docker stop $(docker ps -a -q)`
|
||||
|
||||
### Configuration
|
||||
|
||||
After verifying that everything runs with default configuration values, you will
|
||||
likely want to update:
|
||||
|
||||
- The domain: `http://127.0.0.1`
|
||||
|
||||
#### OHIF Viewer
|
||||
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file. The
|
||||
configuration we use is set to a specific file when we build the viewer, and
|
||||
determined by the env variable: `APP_CONFIG`. You can see where we set its value
|
||||
in the `dockerfile` for this solution:
|
||||
|
||||
`ENV APP_CONFIG=config/docker_openresty-orthanc.js`
|
||||
|
||||
You can find the configuration we're using here:
|
||||
`/public/config/docker_openresty-orthanc.js`
|
||||
|
||||
To rebuild the `webapp` image created by our `dockerfile` after updating the
|
||||
Viewer's configuration, you can run:
|
||||
|
||||
- `docker-compose build` OR
|
||||
- `docker-compose up --build`
|
||||
|
||||
#### Other
|
||||
|
||||
All other files are found in: `/docker/OpenResty-Orthanc/`
|
||||
|
||||
| Service | Configuration | Docs |
|
||||
| ----------------- | --------------------------------- | ------------------------------------------- |
|
||||
| OHIF Viewer | [dockerfile][dockerfile] | You're reading them now! |
|
||||
| OpenResty (Nginx) | [`/nginx.conf`][config-nginx] | [lua-resty-openidc][lua-resty-openidc-docs] |
|
||||
| Orthanc | [`/orthanc.json`][config-orthanc] | [Here][orthanc-docs] |
|
||||
|
||||
## Next Steps
|
||||
|
||||
### Deploying to Production
|
||||
|
||||
While these configuration and docker-compose files model an environment suitable
|
||||
for production, they are not easy to deploy "as is". You can either:
|
||||
|
||||
- Manually recreate this environment and deploy built application files **OR**
|
||||
- Deploy to a cloud kubernetes provider like
|
||||
[Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
|
||||
- [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
|
||||
- Find and follow your preferred provider's guide on setting up
|
||||
[swarms and stacks](https://docs.docker.com/get-started/)
|
||||
|
||||
### Adding SSL
|
||||
|
||||
Adding SSL registration and renewal for your domain with Let's Encrypt that
|
||||
terminates at Nginx is an incredibly important step toward securing your data.
|
||||
Here are some resources, specific to this setup, that may be helpful:
|
||||
|
||||
- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
|
||||
- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
|
||||
|
||||
While we terminate SSL at Nginx, it may be worth using self signed certificates
|
||||
for communication between services.
|
||||
|
||||
- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
|
||||
|
||||
### Use PostgresSQL w/ Orthanc
|
||||
|
||||
Orthanc can handle a large amount of data and requests, but if you find that
|
||||
requests start to slow as you add more and more studies, you may want to
|
||||
configure your Orthanc instance to use PostgresSQL. Instructions on how to do
|
||||
that can be found in the
|
||||
[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
|
||||
"PostgreSQL and Orthanc inside Docker"
|
||||
|
||||
### Improving This Guide
|
||||
|
||||
Here are some improvements this guide would benefit from, and that we would be
|
||||
more than happy to accept Pull Requests for:
|
||||
|
||||
- SSL Support
|
||||
- Complete configuration with `.env` file (or something similar)
|
||||
- Any security issues
|
||||
- One-click deploy to a cloud provider
|
||||
|
||||
## Resources
|
||||
|
||||
### Misc. Helpful Commands
|
||||
|
||||
_Check if `nginx.conf` is valid:_
|
||||
|
||||
```bash
|
||||
docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
|
||||
```
|
||||
|
||||
_Interact w/ running container:_
|
||||
|
||||
`docker exec -it CONTAINER_NAME bash`
|
||||
|
||||
_List running containers:_
|
||||
|
||||
`docker ps`
|
||||
|
||||
### Referenced Articles
|
||||
|
||||
For more documentation on the software we've chosen to use, you may find the
|
||||
following resources helpful:
|
||||
|
||||
- [Orthanc for Docker](http://book.orthanc-server.com/users/docker.html)
|
||||
- [OpenResty Guide](http://www.staticshin.com/programming/definitely-an-open-resty-guide/)
|
||||
- [Lua Ngx API](https://openresty-reference.readthedocs.io/en/latest/Lua_Nginx_API/)
|
||||
|
||||
For a different take on this setup, check out the repositories our community
|
||||
members put together:
|
||||
|
||||
- [mjstealey/ohif-orthanc-dimse-docker](https://github.com/mjstealey/ohif-orthanc-dimse-docker)
|
||||
- [trypag/ohif-orthanc-postgres-docker](https://github.com/trypag/ohif-orthanc-postgres-docker)
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- DOCS -->
|
||||
[nginx]: https://www.nginx.com/resources/glossary/nginx/
|
||||
[understanding-cors]: https://medium.com/@baphemot/understanding-cors-18ad6b478e2b
|
||||
[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
|
||||
[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
|
||||
<!-- SRC -->
|
||||
[dockerfile]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/dockerfile
|
||||
[config-nginx]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/config/nginx.conf
|
||||
[config-orthanc]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/config/orthanc.json
|
||||
<!-- prettier-ignore-end -->
|
||||
149
docs/v2/deployment/recipes/static-assets.md
Normal file
@ -0,0 +1,149 @@
|
||||
# Deploy Static Assets
|
||||
|
||||
> WARNING! All of these solutions stand-up a publicly accessible web viewer. Do
|
||||
> not hook your hosted viewer up to a sensitive source of data without
|
||||
> implementing authentication.
|
||||
|
||||
There are a lot of options for deploying static assets. Some services, like
|
||||
`netlify` and `surge.sh`, specialize in static websites. You'll notice that
|
||||
deploying with them requires much less time and effort, but comes at the cost of
|
||||
less product offerings.
|
||||
|
||||
While not required, it can simplify things to host your Web Viewer alongside
|
||||
your image archive. Services with more robust product offerings, like
|
||||
`Google Cloud`, `Microsoft's Azure`, and `Amazon Web Services (AWS)`, are able
|
||||
to accomodate this setup.
|
||||
|
||||
_Drag-n-drop_
|
||||
|
||||
- [Netlify: Drop](#netlify-drop)
|
||||
|
||||
_Easy_
|
||||
|
||||
- [Surge.sh](#surgesh)
|
||||
- [GitHub Pages](#github-pages)
|
||||
|
||||
_Advanced_
|
||||
|
||||
- [AWS S3 + Cloudfront](#aws-s3--cloudfront)
|
||||
- [GCP + Cloudflare](#gcp--cloudflare)
|
||||
- [Azure](#azure)
|
||||
|
||||
## Drag-n-drop
|
||||
|
||||
### Netlify: Drop
|
||||
|
||||
> Build, deploy, and manage modern web projects. An all-in-one workflow that
|
||||
> combines global deployment, continuous integration, and automatic HTTPS. And
|
||||
> that’s just the beginning.
|
||||
|
||||

|
||||
|
||||
_GIF demonstrating deployment with Netlify Drop_
|
||||
|
||||
1. https://app.netlify.com/drop
|
||||
2. Drag your `build/` folder on to the drop target
|
||||
3. ...
|
||||
4. _annnd you're done_
|
||||
|
||||
**Features:**
|
||||
|
||||
- Custom domains & HTTPS
|
||||
- Instant Git integration
|
||||
- Continuous deployment
|
||||
- Deploy previews
|
||||
- Access to add-ons
|
||||
|
||||
(Non-free tiers include identity, FaaS, Forms, etc.)
|
||||
|
||||
Learn more about [Netlify on their website](https://www.netlify.com/)
|
||||
|
||||
## Easy
|
||||
|
||||
### Surge.sh
|
||||
|
||||
> Static web publishing for Front-End Developers. Simple, single-command web
|
||||
> publishing. Publish HTML, CSS, and JS for free, without leaving the command
|
||||
> line.
|
||||
|
||||

|
||||
|
||||
_GIF demonstrating deployment with surge_
|
||||
|
||||
```shell
|
||||
# Add surge command
|
||||
yarn global add surge
|
||||
|
||||
# In the build directory
|
||||
surge
|
||||
```
|
||||
|
||||
**Features:**
|
||||
|
||||
- Free custom domain support
|
||||
- Free SSL for surge.sh subdomains
|
||||
- pushState support for single page apps
|
||||
- Custom 404.html pages
|
||||
- Barrier-free deployment through the CLI
|
||||
- Easy integration into your Grunt toolchain
|
||||
- Cross-origin resource support
|
||||
- And more…
|
||||
|
||||
Learn more about [surge.sh on their website](https://surge.sh/)
|
||||
|
||||
### GitHub Pages
|
||||
|
||||
> WARNING! While great for project sites and light use, it is not advised to use
|
||||
> GitHub Pages for production workloads. Please consider using a different
|
||||
> service for mission critical applications.
|
||||
|
||||
> Websites for you and your projects. Hosted directly from your GitHub
|
||||
> repository. Just edit, push, and your changes are live.
|
||||
|
||||
This deploy strategy makes more sense if you intend to maintain your project in
|
||||
a GitHub repository. It allows you to specify a `branch` or `folder` as the
|
||||
target for a GitHub Page's website. As you push code changes, the hosted content
|
||||
updates to reflect those changes.
|
||||
|
||||
1. Head over to GitHub.com and create a new repository, or go to an existing
|
||||
one. Click on the Settings tab.
|
||||
2. Scroll down to the GitHub Pages section. Choose the `branch` or `folder` you
|
||||
would like as the "root" of your website.
|
||||
3. Fire up a browser and go to `http://username.github.io/repository`
|
||||
|
||||
Configuring Your Site:
|
||||
|
||||
- [Setting up a custom domain](https://help.github.com/en/articles/using-a-custom-domain-with-github-pages)
|
||||
- [Setting up SSL](https://help.github.com/en/articles/securing-your-github-pages-site-with-https)
|
||||
|
||||
Learn more about [GitHub Pages on its website](https://pages.github.com/)
|
||||
|
||||
## Advanced
|
||||
|
||||
All of these options, while using providers with more service offerings,
|
||||
demonstrate how to host the viewer with their respective file storage and CDN
|
||||
offerings. While you can serve your static assets this way, if you're going
|
||||
through the trouble of using AWS/GCP/Azure, it's more likely you're doing so to
|
||||
avoid using a proxy or to simplify authentication.
|
||||
|
||||
If that is the case, check out some of our more advanced `docker` deployments
|
||||
that target these providers from the left-hand sidepanel.
|
||||
|
||||
These guides can be a bit longer and a update more frequently. To provide
|
||||
accurate documentation, we will link to each provider's own recommended steps:
|
||||
|
||||
### AWS S3 + Cloudfront
|
||||
|
||||
- [Host a Static Website](https://docs.aws.amazon.com/AmazonS3/latest/dev/website-hosting-custom-domain-walkthrough.html)
|
||||
- [Speed Up Your Website with Cloudfront](https://docs.aws.amazon.com/AmazonS3/latest/dev/website-hosting-cloudfront-walkthrough.html)
|
||||
|
||||
### GCP + Cloudflare
|
||||
|
||||
- [Things to Know Before Getting Started](https://code.luasoftware.com/tutorials/google-cloud-storage/things-to-know-before-hosting-static-website-on-google-cloud-storage/)
|
||||
- [Hosting a Static Website on GCP](https://cloud.google.com/storage/docs/hosting-static-website)
|
||||
|
||||
### Azure
|
||||
|
||||
- [Host a Static Website](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-blob-static-website)
|
||||
- [Add SSL Support](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-https-custom-domain-cdn)
|
||||
- [Configure a Custom Domain](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-custom-domain-name)
|
||||
288
docs/v2/deployment/recipes/user-account-control.md
Normal file
@ -0,0 +1,288 @@
|
||||
# User Account Control
|
||||
|
||||
> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
|
||||
> doubt, enlist the help of an expert and conduct proper audits.
|
||||
|
||||
Making a viewer and its medical imaging data accessible on the open web can
|
||||
provide a lot of benefits, but requires additional security to make sure
|
||||
sensitive information can only be viewed by authorized individuals. Most image
|
||||
archives are equipped with basic security measures, but they are not
|
||||
robust/secure enough for the open web.
|
||||
|
||||
This guide covers one of many potential production setups that secure our
|
||||
sensitive data.
|
||||
|
||||
## Overview
|
||||
|
||||
This guide builds on top of our
|
||||
[Nginx + Image Archive guide](/deployment/recipes/nginx--image-archive.md),
|
||||
wherein we used a [`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy)
|
||||
to retrieve resources from our image archive (Orthanc).
|
||||
|
||||
To add support for "User Account Control" we introduce
|
||||
[Keycloak](https://www.keycloak.org/about.html). Keycloak is an open source
|
||||
Identity and Access Management solution that makes it easy to secure
|
||||
applications and services with little to no code. We improve upon our
|
||||
`reverse proxy` setup by integrating Keycloak and Nginx to create an
|
||||
`authenticating reverse proxy`.
|
||||
|
||||
> An authenticating reverse proxy is a reverse proxy that only retrieves the
|
||||
> resources on behalf of a client if the client has been authenticated. If a
|
||||
> client is not authenticated they can be redirected to a login page.
|
||||
|
||||
This setup allows us to create a setup similar to the one pictured below:
|
||||
|
||||
{% include "./../_user-account-control-flow-diagram.md" %}
|
||||
|
||||
- All web requests are routed through `nginx` on our `OpenResty` image
|
||||
- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
|
||||
- Requires valid `Authorization: Bearer <token>` header
|
||||
- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
|
||||
- `/auth` is a reverse proxy for `keycloak`
|
||||
- All static resources for OHIF Viewer are unprotected and accessible. We have
|
||||
application logic that will redirect unauthenticated users to the appropriate
|
||||
`keycloak` login screen.
|
||||
|
||||
## Getting Started
|
||||
|
||||
### Requirements
|
||||
|
||||
- Docker
|
||||
- [Docker for Mac](https://docs.docker.com/docker-for-mac/)
|
||||
- [Docker for Windows](https://docs.docker.com/docker-for-windows/)
|
||||
|
||||
_Not sure if you have `docker` installed already? Try running `docker --version`
|
||||
in command prompt or terminal_
|
||||
|
||||
### Setup
|
||||
|
||||
_Spin Things Up_
|
||||
|
||||
- Navigate to `<project-root>/docker/OpenResty-Orthanc-Keycloak` in your shell
|
||||
- Run `docker-compose up`
|
||||
|
||||
_Create Your First User_
|
||||
|
||||
- Navigate to: `http://127.0.0.1/auth/admin`
|
||||
- Sign in with: `admin`/`password`
|
||||
- From the top left dropdown, select the `Ohif` realm
|
||||
- From the left sidebar, under `Manage`, select `Users`
|
||||
- Click `Add User`
|
||||
- Username: `test`
|
||||
- Email Verified: `ON`
|
||||
- Click `Save`
|
||||
- Click the `Credentials` Tab
|
||||
- New Pasword: `test`
|
||||
- Password Confirmation: `test`
|
||||
- Temporary: `OFF`
|
||||
- Click: `Reset Password`
|
||||
- From the top right dropdown, select `Admin`, then `Sign Out`
|
||||
|
||||
_Sign In_
|
||||
|
||||
- Navigate to `http://127.0.0.1/`
|
||||
- Username: `test`, Password: `test`
|
||||
- Click `Log In`
|
||||
|
||||
_Upload Your First Study_
|
||||
|
||||
- Navigate to `http://127.0.0.1/pacs-admin`
|
||||
- If you're not already logged in, use `test`/`test`
|
||||
- From the top right, select "Upload"
|
||||
- Click "Select files to upload..." (DICOM)
|
||||
- Click "Start the upload"
|
||||
- Navigate back to `http://127.0.0.1/` to view your studies in the Study List
|
||||
|
||||
### Troubleshooting
|
||||
|
||||
_Exit code 137_
|
||||
|
||||
This means Docker ran out of memory. Open Docker Desktop, go to the `advanced`
|
||||
tab, and increase the amount of Memory available.
|
||||
|
||||
_Cannot create container for service X_
|
||||
|
||||
Use this one with caution: `docker system prune`
|
||||
|
||||
_X is already running_
|
||||
|
||||
Stop running all containers:
|
||||
|
||||
- Win: `docker ps -a -q | ForEach { docker stop $_ }`
|
||||
- Linux: `docker stop $(docker ps -a -q)`
|
||||
|
||||
### Configuration
|
||||
|
||||
After verifying that everything runs with default configuration values, you will
|
||||
likely want to update:
|
||||
|
||||
- The domain: `http://127.0.0.1`
|
||||
- Set secure, non-default passwords
|
||||
- Regenerate Keycloak Client Secrets
|
||||
|
||||
#### OHIF Viewer
|
||||
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file. The
|
||||
configuration we use is set to a specific file when we build the viewer, and
|
||||
determined by the env variable: `APP_CONFIG`. You can see where we set its value
|
||||
in the `dockerfile` for this solution:
|
||||
|
||||
`ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
|
||||
|
||||
You can find the configuration we're using here:
|
||||
`/public/config/docker_openresty-orthanc-keycloak.js`
|
||||
|
||||
To rebuild the `webapp` image created by our `dockerfile` after updating the
|
||||
Viewer's configuration, you can run:
|
||||
|
||||
- `docker-compose build` OR
|
||||
- `docker-compose up --build`
|
||||
|
||||
#### Other
|
||||
|
||||
All other files are found in: `/docker/OpenResty-Orthanc-Keycloak/`
|
||||
|
||||
| Service | Configuration | Docs |
|
||||
| ----------------- | ------------------------------------------------ | ------------------------------------------- |
|
||||
| OHIF Viewer | [dockerfile][dockerfile] / [config.js][config] | You're reading them now! |
|
||||
| OpenResty (Nginx) | [`/nginx.conf`][config-nginx] | [lua-resty-openidc][lua-resty-openidc-docs] |
|
||||
| Orthanc | [`/orthanc.json`][config-orthanc] | [Here][orthanc-docs] |
|
||||
| Keycloak | [`/ohif-keycloak-realm.json`][config-keycloak]\* | |
|
||||
|
||||
\* These are the seed values for Keycloak. They can be manually updated at
|
||||
`http://127.0.0.1/auth/admin`
|
||||
|
||||
#### Keycloak Themeing
|
||||
|
||||
The `Login` screen for the `ohif-viewer` client is using a Custom Keycloak
|
||||
theme. You can find the source files for it in
|
||||
`/docker/OpenResty-Orthanc-Keycloak/volumes/keycloak-themes/`. You can see how
|
||||
we add it to Keycloak in the `docker-compose` file, and you can read up on how
|
||||
to leverage custom themes in
|
||||
[Keycloak's own docs](https://www.keycloak.org/docs/latest/server_development/index.html#_themes).
|
||||
|
||||
| Default Theme | OHIF Theme |
|
||||
| ---------------------------------------------------------------------- | ---------------------------------------------------------------- |
|
||||
|  |  |
|
||||
|
||||
## Next Steps
|
||||
|
||||
### Deploying to Production
|
||||
|
||||
While these configuration and docker-compose files model an environment suitable
|
||||
for production, they are not easy to deploy "as is". You can either:
|
||||
|
||||
- Manually recreate this environment and deploy built application files **OR**
|
||||
- Deploy to a cloud kubernetes provider like
|
||||
[Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
|
||||
- [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
|
||||
- Find and follow your preferred provider's guide on setting up
|
||||
[swarms and stacks](https://docs.docker.com/get-started/)
|
||||
|
||||
### Adding SSL
|
||||
|
||||
Adding SSL registration and renewal for your domain with Let's Encrypt that
|
||||
terminates at Nginx is an incredibly important step toward securing your data.
|
||||
Here are some resources, specific to this setup, that may be helpful:
|
||||
|
||||
- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
|
||||
- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
|
||||
|
||||
While we terminate SSL at Nginx, it may be worth using self signed certificates
|
||||
for communication between services.
|
||||
|
||||
- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
|
||||
|
||||
### Use PostgresSQL w/ Orthanc
|
||||
|
||||
Orthanc can handle a large amount of data and requests, but if you find that
|
||||
requests start to slow as you add more and more studies, you may want to
|
||||
configure your Orthanc instance to use PostgresSQL. Instructions on how to do
|
||||
that can be found in the
|
||||
[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
|
||||
"PostgreSQL and Orthanc inside Docker"
|
||||
|
||||
### Improving This Guide
|
||||
|
||||
Here are some improvements this guide would benefit from, and that we would be
|
||||
more than happy to accept Pull Requests for:
|
||||
|
||||
- SSL Support
|
||||
- Complete configuration with `.env` file (or something similar)
|
||||
- Keycloak Theme improvements
|
||||
- Any security issues
|
||||
- One-click deploy to a cloud provider
|
||||
|
||||
## Resources
|
||||
|
||||
### Misc. Helpful Commands
|
||||
|
||||
_Check if `nginx.conf` is valid:_
|
||||
|
||||
```bash
|
||||
docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
|
||||
```
|
||||
|
||||
_Interact w/ running container:_
|
||||
|
||||
`docker exec -it CONTAINER_NAME bash`
|
||||
|
||||
_List running containers:_
|
||||
|
||||
`docker ps`
|
||||
|
||||
_Clear Keycloak DB so you can re-seed values:_
|
||||
|
||||
- `docker volume prune` OR
|
||||
- `docker volume ls` and `docker volume rm VOLUME_NAME VOLUME_NAME`
|
||||
|
||||
### Referenced Articles
|
||||
|
||||
The inspiration for our setup was driven largely by these articles:
|
||||
|
||||
- [Securing Nginx with Keycloak](https://edhull.co.uk/blog/2018-06-06/keycloak-nginx)
|
||||
- [Authenticating Reverse Proxy with Keycloak](https://eclipsesource.com/blogs/2018/01/11/authenticating-reverse-proxy-with-keycloak/)
|
||||
- [Securing APIs with Kong and Keycloak](https://www.jerney.io/secure-apis-kong-keycloak-1/)
|
||||
|
||||
For more documentation on the software we've chosen to use, you may find the
|
||||
following resources helpful:
|
||||
|
||||
- [Orthanc for Docker](http://book.orthanc-server.com/users/docker.html)
|
||||
- [OpenResty Guide](http://www.staticshin.com/programming/definitely-an-open-resty-guide/)
|
||||
- [Lua Ngx API](https://openresty-reference.readthedocs.io/en/latest/Lua_Nginx_API/)
|
||||
- [Auth0: Picking a Grant Type](https://auth0.com/docs/api-auth/which-oauth-flow-to-use)
|
||||
|
||||
We chose to use a generic OpenID Connect library on the client, but it's worth
|
||||
noting that Keycloak comes packaged with its own:
|
||||
|
||||
- [redux-oidc](https://github.com/maxmantz/redux-oidc) (Which wraps
|
||||
[oidc-client-js](https://github.com/IdentityModel/oidc-client-js/wiki))
|
||||
- [Keycloak JavaScript Adapter](https://www.keycloak.org/docs/latest/securing_apps/index.html#_javascript_adapter)
|
||||
|
||||
If you're not already drowning in links, here are some good security resources
|
||||
for OAuth:
|
||||
|
||||
- [Diagrams of OpenID Connect Flows](https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660)
|
||||
- [KeyCloak: OpenID Connect Flows](https://www.keycloak.org/docs/latest/securing_apps/index.html#authorization-code)
|
||||
|
||||
For a different take on this setup, check out the repositories our community
|
||||
members put together:
|
||||
|
||||
- [mjstealey/ohif-orthanc-dimse-docker](https://github.com/mjstealey/ohif-orthanc-dimse-docker)
|
||||
- [trypag/ohif-orthanc-postgres-docker](https://github.com/trypag/ohif-orthanc-postgres-docker)
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- DOCS -->
|
||||
[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
|
||||
[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
|
||||
<!-- SRC -->
|
||||
[config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/src/config.js
|
||||
[dockerfile]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc-Keycloak/dockerfile
|
||||
[config-nginx]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc-Keycloak/config/nginx.conf
|
||||
[config-orthanc]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc-Keycloak/config/orthanc.json
|
||||
[config-keycloak]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc-Keycloak/config/ohif-keycloak-realm.json
|
||||
<!-- prettier-ignore-end -->
|
||||
109
docs/v2/development/continous-integration.md
Normal file
@ -0,0 +1,109 @@
|
||||
# Continous Integration (CI)
|
||||
|
||||
This repository uses `CircleCI` and `Netlify` for continous integration.
|
||||
|
||||
## Deploy Previews
|
||||
|
||||
[Netlify Deploy previews][deploy-previews] are generated for every pull request.
|
||||
They allow pull request authors and reviewers to "Preview" the OHIF Viewer as if
|
||||
the changes had been merged.
|
||||
|
||||
Deploy previews can be configured by modifying the `netlify.toml` file in the
|
||||
root of the repository. Some additional scripts/assets for netlify are included
|
||||
in the root `.netlify` directory.
|
||||
|
||||
## Workflows
|
||||
|
||||
[CircleCI Workflows][circleci-workflows] are a set of rules for defining a
|
||||
collection of jobs and their run order. They are self-documenting and their
|
||||
configuration can be found in our CircleCI configuration file:
|
||||
`.circleci/config.yml`.
|
||||
|
||||
### Workflow: PR_CHECKS
|
||||
|
||||
The PR_CHECKS workflow (Pull Request Checks) runs our automated unit and
|
||||
end-to-end tests for every code check-in. These tests must all pass before code
|
||||
can be merged to our `master` branch.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_CHECKS.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_CHECKS.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_CHECKS</i></div>
|
||||
</div>
|
||||
|
||||
### Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
|
||||
The PR_OPTIONAL_DOCKER_PUBLISH workflow allows for "manual approval" to publish
|
||||
the pull request as a tagged docker image. This is helpful when changes need to
|
||||
be tested with the Google Adapter before merging to `master`.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH</i></div>
|
||||
</div>
|
||||
|
||||
> NOTE: This workflow will fail unless it's for a branch on our `upstream`
|
||||
> repository. If you need this functionality, but the branch is from a fork,
|
||||
> merge the changes to a short-lived `feature/` branch on `upstream`
|
||||
|
||||
### Workflow: DEPLOY
|
||||
|
||||
The DEPLOY workflow deploys the OHIF Viewer when changes are merged to master.
|
||||
It uses the Netlify CLI to deploy assets created as part of the repository's PWA
|
||||
Build process (`yarn run build`). The workflow allows for "Manual Approval" to
|
||||
promote the build to `STAGING` and `PRODUCTION` environments.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_DEPLOY.png">
|
||||
<img src="/assets/img/WORKFLOW_DEPLOY.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_DEPLOY</i></div>
|
||||
</div>
|
||||
|
||||
| Environment | Description | URL |
|
||||
| ----------- | ---------------------------------------------------------------------------------- | --------------------------------------------- |
|
||||
| Development | Always reflects latest changes on `master` branch. | [Netlify][netlify-dev] / [OHIF][ohif-dev] |
|
||||
| Staging | For manual testing before promotion to prod. Keeps development workflow unblocked. | [Netlify][netlify-stage] / [OHIF][ohif-stage] |
|
||||
| Production | Stable, tested, updated less frequently. | [Netlify][netlify-prod] / [OHIF][ohif-prod] |
|
||||
|
||||
### Workflow: RELEASE
|
||||
|
||||
The RELEASE workflow publishes our `npm` packages, updated documentation, and
|
||||
`docker` image when changes are merged to master. `Lerna` and "Semantic Commit
|
||||
Syntax" are used to independently version and publish the many packages in our
|
||||
monorepository. If a new version is cut/released, a Docker image is created.
|
||||
Documentation is generated with `gitbook` and pushed to our `gh-pages` branch.
|
||||
GitHub hosts the `gh-pages` branch with GitHub Pages.
|
||||
|
||||
- Platform Packages: https://github.com/ohif/viewers/#platform
|
||||
- Extension Packages: https://github.com/ohif/viewers/#extensions
|
||||
- Documentation: https://docs.ohif.org/
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_RELEASE.png">
|
||||
<img src="/assets/img/WORKFLOW_RELEASE.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_RELEASE</i></div>
|
||||
</div>
|
||||
|
||||
### HOTFIX
|
||||
|
||||
_Not yet implemented_
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[deploy-previews]: https://www.netlify.com/blog/2016/07/20/introducing-deploy-previews-in-netlify/
|
||||
[circleci-workflows]: https://circleci.com/docs/2.0/workflows/
|
||||
[netlify-dev]: https://ohif-dev.netlify.com
|
||||
[netlify-stage]: https://ohif-stage.netlify.com
|
||||
[netlify-prod]: https://ohif-prod.netlify.com
|
||||
[ohif-dev]: https://viewer-dev.ohif.org
|
||||
[ohif-stage]: https://viewer-stage.ohif.org
|
||||
[ohif-prod]: https://viewer-prod.ohif.org
|
||||
<!-- prettier-ignore-end -->
|
||||
146
docs/v2/development/contributing.md
Normal file
@ -0,0 +1,146 @@
|
||||
# Contributing
|
||||
|
||||
## How can I help?
|
||||
|
||||
Fork the repository, make your change and submit a pull request. If you would
|
||||
like to discuss the changes you intend to make to clarify where or how they
|
||||
should be implemented, please don't hesitate to create a new issue. At a
|
||||
minimum, you may want to read the following documentation:
|
||||
|
||||
- [Getting Started](/development/getting-started.md)
|
||||
- [Architecture](/architecture/index.md)
|
||||
|
||||
Pull requests that are:
|
||||
|
||||
- Small
|
||||
- [Well tested](./testing.md)
|
||||
- Decoupled
|
||||
|
||||
Are much more likely to get reviewed and merged in a timely manner.
|
||||
|
||||
## When changes impact multiple repositories
|
||||
|
||||
While this can be tricky, we've tried to reduce how often this situation crops
|
||||
up this with our [recent switch to a monorepo][monorepo]. Our maintained
|
||||
extensions, ui components, internationalization library, and business logic can
|
||||
all be developed by simply running `yarn run dev` from the repository root.
|
||||
|
||||
Testing the viewer with locally developed, unpublished package changes from a
|
||||
package outside of the monorepo is most common with extension development. Let's
|
||||
demonstrate how to accomplish this with two commonly forked extension
|
||||
dependencies:
|
||||
|
||||
### `cornerstone-tools`
|
||||
|
||||
On your local file system:
|
||||
|
||||
```bash
|
||||
# code/my-projects/
|
||||
.
|
||||
├── cornerstonejs/cornerstone-tools
|
||||
└── ohif/viewers
|
||||
```
|
||||
|
||||
- Open a terminal/shell
|
||||
- Navigate to `cornerstonejs/cornerstone-tools`
|
||||
- `npm install`
|
||||
- [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `npm run dev`
|
||||
- Open a new terminal/shell
|
||||
- Navigate to `ohif/viewers`.
|
||||
- `yarn install`
|
||||
- [`yarn link cornerstone-tools`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run dev`
|
||||
|
||||
As you make changed to `cornerstone-tools`, and it's output is rebuilt, you
|
||||
should see the following behavior:
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/cornerstone-tools-link.gif">
|
||||
<img src="/assets/img/cornerstone-tools-link.gif" alt="Example of linked cornerstone-tools package" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>example of linked cornerstone-tools package</i></div>
|
||||
</div>
|
||||
|
||||
If you wish to stop using your local package, run the following commands in the
|
||||
`ohif/viewers` repository root:
|
||||
|
||||
- `yarn unlink cornerstone-tools`
|
||||
- `yarn install --force`
|
||||
|
||||
### `react-vtkjs-viewport`
|
||||
|
||||
On your local file system:
|
||||
|
||||
```bash
|
||||
# code/my-projects/
|
||||
.
|
||||
├── ohif/react-vtkjs-viewport
|
||||
└── ohif/viewers
|
||||
```
|
||||
|
||||
- Open a terminal/shell
|
||||
- Navigate to `ohif/react-vtkjs-viewport`
|
||||
- `yarn install`
|
||||
- [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run start`
|
||||
- Open a new terminal/shell
|
||||
- Navigate to `ohif/viewers`.
|
||||
- `yarn install`
|
||||
- [`yarn link react-vtkjs-viewport`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run dev`
|
||||
|
||||
#### Other linkage notes
|
||||
|
||||
We're still working out some of the kinks with local package development as
|
||||
there are a lot of factors that can influence the behavior of our development
|
||||
server and bundler. If you encounter issues not addressed here, please don't
|
||||
hesitate to reach out on GitHub.
|
||||
|
||||
## Any guidance on submitting changes?
|
||||
|
||||
While we do appreciate code contributions, triaging and integrating contributed
|
||||
code changes can be very time consuming. Please consider the following tips when
|
||||
working on your pull requests:
|
||||
|
||||
- Functionality is appropriate for the repository. Consider creating a GitHub
|
||||
issue to discuss your suggested changes.
|
||||
- The scope of the pull request is not too large. Please consider separate pull
|
||||
requests for each feature as big pull requests are very time consuming to
|
||||
understand.
|
||||
|
||||
We will provide feedback on your pull requests as soon as possible. Following
|
||||
the tips above will help ensure your changes are reviewed.
|
||||
|
||||
## Testing contribution pull requests
|
||||
|
||||
OHIF uses [netlify](https://www.netlify.com/) so that pull requests are
|
||||
autogenerated and available for testing.
|
||||
|
||||
For example, [this url][example-url] allows you to test [pull request 237, the
|
||||
request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
|
||||
|
||||
Replacing the number 237 in the link below with your pull request number should
|
||||
let you test it as well and you can use this link for discussions on github
|
||||
without requiring reviewers to download and build your branch.
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
```
|
||||
|
||||
If you have made a documentation change, a link like this will let you preview
|
||||
the gitbook generated by the pull request:
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/contributing.html
|
||||
```
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
[pr-237]: https://github.com/OHIF/Viewers/pull/237
|
||||
[monorepo]: https://github.com/OHIF/Viewers/issues/768
|
||||
<!-- prettier-ignore-end -->
|
||||
107
docs/v2/development/getting-started.md
Normal file
@ -0,0 +1,107 @@
|
||||
# Getting Started
|
||||
|
||||
## Setup
|
||||
|
||||
### Fork & Clone
|
||||
|
||||
If you intend to contribute back changes, or if you would like to pull updates
|
||||
we make to the OHIF Viewer, then follow these steps:
|
||||
|
||||
- [Fork][fork-a-repo] the [OHIF/Viewers][ohif-viewers-repo] repository
|
||||
- [Create a local clone][clone-a-repo] of your fork
|
||||
- `git clone https://github.com/YOUR-USERNAME/Viewers`
|
||||
- Add OHIF/Viewers as a [remote repository][add-remote-repo] labled `upstream`
|
||||
- Navigate to the cloned project's directory
|
||||
- `git remote add upstream https://github.com/OHIF/Viewers.git`
|
||||
|
||||
With this setup, you can now [sync your fork][sync-changes] to keep it
|
||||
up-to-date with the upstream (original) repository. This is called a "Triangular
|
||||
Workflow" and is common for Open Source projects. The GitHub blog has a [good
|
||||
graphic that illustrates this setup][triangular-workflow].
|
||||
|
||||
### Private
|
||||
|
||||
Alternatively, if you intend to use the OHIF Viewer as a starting point, and you
|
||||
aren't as concerned with syncing updates, then follow these steps:
|
||||
|
||||
1. Navigate to the [OHIF/Viewers][ohif-viewers] repository
|
||||
2. Click `Clone or download`, and then `Download ZIP`
|
||||
3. Use the contents of the `.zip` file as a starting point for your viewer
|
||||
|
||||
> NOTE: It is still possible to sync changes using this approach. However,
|
||||
> submitting pull requests for fixes and features are best done with the
|
||||
> separate, forked repository setup described in "Fork & Clone"
|
||||
|
||||
## Developing
|
||||
|
||||
### Requirements
|
||||
|
||||
- [Node.js & NPM](https://nodejs.org/en/)
|
||||
- [Yarn](https://yarnpkg.com/en/)
|
||||
- Yarn workspaces should be enabled:
|
||||
- `yarn config set workspaces-experimental true`
|
||||
|
||||
### Kick the tires
|
||||
|
||||
Navigate to the root of the project's directory in your terminal and run the
|
||||
following commands:
|
||||
|
||||
```bash
|
||||
# Restore dependencies
|
||||
yarn install
|
||||
|
||||
# Start local development server
|
||||
yarn run dev
|
||||
```
|
||||
|
||||
You should see the following output:
|
||||
|
||||
```bash
|
||||
@ohif/viewer: i 「wds」: Project is running at http://localhost:3000/
|
||||
@ohif/viewer: i 「wds」: webpack output is served from /
|
||||
@ohif/viewer: i 「wds」: Content not from webpack is served from D:\code\ohif\Viewers\platform\viewer
|
||||
@ohif/viewer: i 「wds」: 404s will fallback to /index.html
|
||||
|
||||
# And a list of all generated files
|
||||
```
|
||||
|
||||
### 🎉 Celebrate 🎉
|
||||
|
||||
<center>
|
||||
<img alt="development server hosted app" src="/assets/img/loading-study.gif" />
|
||||
<i>Our app, hosted by the development server</i>
|
||||
</center>
|
||||
|
||||
### Building for Production
|
||||
|
||||
> More comprehensive guides for building and publishing can be found in our
|
||||
> [deployment docs](./../deployment/index.md)
|
||||
|
||||
```bash
|
||||
# Build static assets to host a PWA
|
||||
yarn run build
|
||||
|
||||
# Build packaged output (script-tag use)
|
||||
yarn run build:package
|
||||
```
|
||||
|
||||
## Troubleshooting
|
||||
|
||||
- If you receive a _"No Studies Found"_ message and do not see your studies, try
|
||||
changing the Study Date filters to a wider range.
|
||||
- If you see a 'Loading' message which never resolves, check your browser
|
||||
JavaScript console inside the Developer Tools to identify any errors.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[fork-a-repo]: https://help.github.com/en/articles/fork-a-repo
|
||||
[clone-a-repo]: https://help.github.com/en/articles/fork-a-repo#step-2-create-a-local-clone-of-your-fork
|
||||
[add-remote-repo]: https://help.github.com/en/articles/fork-a-repo#step-3-configure-git-to-sync-your-fork-with-the-original-spoon-knife-repository
|
||||
[sync-changes]: https://help.github.com/en/articles/syncing-a-fork
|
||||
[triangular-workflow]: https://github.blog/2015-07-29-git-2-5-including-multiple-worktrees-and-triangular-workflows/#improved-support-for-triangular-workflows
|
||||
[ohif-viewers-repo]: https://github.com/OHIF/Viewers
|
||||
[ohif-viewers]: https://github.com/OHIF/Viewers
|
||||
<!-- prettier-ignore-end -->
|
||||
145
docs/v2/development/testing.md
Normal file
@ -0,0 +1,145 @@
|
||||
# Contributing: Tests
|
||||
|
||||
> Testing is an opinionated topic. Here is a rough overview of our testing
|
||||
> philosiphy. See something you want to discuss or think should be changed? Open
|
||||
> a PR and let's discuss.
|
||||
|
||||
You're an engineer. You know how to write code, and writing tests isn't all that
|
||||
different. But do you know why we write tests? Do you know when to write one, or
|
||||
what kind of test to write? How do you know if a test is a _"good"_ test? This
|
||||
document's goal is to give you the tools you need to make those determinations.
|
||||
|
||||
Okay. So why do we write tests? To increase our... **CONFIDENCE**
|
||||
|
||||
- If I do a large refactor, does everything still work?
|
||||
- If I changed some critical piece of code, is it safe to push to production?
|
||||
|
||||
Gaining the confidence we need to answer these questions after every change is
|
||||
costly. Good tests allow us to answer them without manual regression testing.
|
||||
What and how we choose to test to increase that confidence is nuanced.
|
||||
|
||||
## Kinds of Tests
|
||||
|
||||
Test's buy us confidence, but not all tests are created equal. Each kind of test
|
||||
has a different cost to write and maintain. An expensive test is worth it if it
|
||||
gives us confidence that a payment is processed, but it may not be the best
|
||||
choice for asserting an element's border color.
|
||||
|
||||
| Test Type | Example | Speed | Cost |
|
||||
| ----------- | ------------------------------------------------------------------------ | ---------------- | ------------------------------------------------------------------------ |
|
||||
| Static | `addNums(1, '2')` called with `string`, expected `int`. | :rocket: Instant | :money_with_wings: |
|
||||
| Unit | `addNums(1, 2)` returns expected result `3` | :airplane: Fast | :money_with_wings::money_with_wings: |
|
||||
| Integration | Clicking "Sign In", navigates to the dashboard (mocked network requests) | :running: Okay | :money_with_wings::money_with_wings::money_with_wings: |
|
||||
| End-to-end | Clicking "Sign In", navigates to the dashboard (no mocks) | :turtle: Slow | :money_with_wings::money_with_wings::money_with_wings::money_with_wings: |
|
||||
|
||||
- :rocket: Speed: How quickly tests run
|
||||
- :money_with_wings: Cost: Time to write, and to debug when broken (more points
|
||||
of failure)
|
||||
|
||||
### Static Code Analysis
|
||||
|
||||
Modern tooling gives us this "for free". It can catch invalid regular
|
||||
expressions, unused variables, and guarantee we're calling methods/functions
|
||||
with the expected paramater types.
|
||||
|
||||
Example Tooling:
|
||||
|
||||
- [ESLint][eslint-rules]
|
||||
- [TypeScript][typescript-docs] or [Flow][flow-org]
|
||||
|
||||
### Unit Tests
|
||||
|
||||
The building blocks of our libraries and applications. For these, you'll often
|
||||
be testing a single function or method. Conceptually, this equates to:
|
||||
|
||||
_Pure Function Test:_
|
||||
|
||||
- If I call `sum(2, 2)`, I expect the output to be `4`
|
||||
|
||||
_Side Effect Test:_
|
||||
|
||||
- If I call `resetViewport(viewport)`, I expect `cornerstone.reset` to be called
|
||||
with `viewport`
|
||||
|
||||
#### When to use
|
||||
|
||||
Anything that is exposed as public API should have unit tests.
|
||||
|
||||
#### When to avoid
|
||||
|
||||
You're actually testing implementation details. You're testing implementation
|
||||
details if:
|
||||
|
||||
- Your test does something that the consumer of your code would never do.
|
||||
- IE. Using a private function
|
||||
- A refactor can break your tests
|
||||
|
||||
### Integration Tests
|
||||
|
||||
We write integration tests to gain confidence that several units work together.
|
||||
Generally, we want to mock as little as possible for these tests. In practice,
|
||||
this means only mocking network requests.
|
||||
|
||||
#### When to use
|
||||
|
||||
...
|
||||
|
||||
### End-to-End Tests
|
||||
|
||||
These are the most expensive tests to write and maintain. Largely because, when
|
||||
they fail, they have the largest number of potential points of failure. So why
|
||||
do we write them? Because they also buy us the most confidence.
|
||||
|
||||
#### When to use
|
||||
|
||||
Mission critical features and functionality, or to cover a large breadth of
|
||||
functionality until unit tests catch up. Unsure if we should have a test for
|
||||
feature `X` or scenario `Y`? Open an issue and let's discuss.
|
||||
|
||||
## Summary
|
||||
|
||||
- Does your test increase confidence?
|
||||
- Does the test type chosen balance the cost-to-confidence ratio?
|
||||
|
||||
## Further Reading
|
||||
|
||||
### General
|
||||
|
||||
- [Assert(js) Conf 2018 Talks][assert-js-talks]
|
||||
- [Write tests. Not too many. Mostly integration.][kent-talk] - Kent C. Dodds
|
||||
- [I see your point, but…][gleb-talk] - Gleb Bahmutov
|
||||
- [Static vs Unit vs Integration vs E2E Testing][kent-blog] - Kent C. Dodds
|
||||
(Blog)
|
||||
|
||||
### End-to-end Testing w/ Cypress
|
||||
|
||||
- [Getting Started](https://docs.cypress.io/guides/overview/why-cypress.html)
|
||||
- Be sure to check out `Getting Started` and `Core Concepts`
|
||||
- [Best Practices](https://docs.cypress.io/guides/references/best-practices.html)
|
||||
- [Example Recipes](https://docs.cypress.io/examples/examples/recipes.html)
|
||||
|
||||
## Testing Dorito
|
||||
|
||||
[![testing dorito][testing-dorito-img]][testing-dorito]
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[eslint-rules]: https://eslint.org/docs/rules/
|
||||
[typescript-docs]: https://www.typescriptlang.org/docs/home.html
|
||||
[flow-org]: https://flow.org/
|
||||
<!-- Talks -->
|
||||
[assert-js-talks]: https://www.youtube.com/playlist?list=PLZ66c9_z3umNSrKSb5cmpxdXZcIPNvKGw
|
||||
[kent-talk]: https://www.youtube.com/watch?v=Fha2bVoC8SE
|
||||
[gleb-talk]: https://www.youtube.com/watch?v=5FnalKRjpZk
|
||||
[kent-blog]: https://kentcdodds.com/blog/unit-vs-integration-vs-e2e-tests
|
||||
<!-- Images -->
|
||||
[testing-trophy]: https://twitter.com/kentcdodds/status/960723172591992832?ref_src=twsrc%5Etfw%7Ctwcamp%5Etweetembed%7Ctwterm%5E960723172591992832&ref_url=https%3A%2F%2Fkentcdodds.com%2Fblog%2Fwrite-tests
|
||||
[aaron-square]: https://twitter.com/Carofine247/status/966727489274961920
|
||||
[gleb-pyramid]: https://twitter.com/Carofine247/status/966764532046684160/photo/3
|
||||
[testing-pyramid]: https://dojo.ministryoftesting.com/dojo/lessons/the-mobile-test-pyramid
|
||||
[testing-dorito]: https://twitter.com/denvercoder/status/960752578198843392
|
||||
[testing-dorito-img]: https://pbs.twimg.com/media/DVVHXycUMAAcN-F?format=jpg&name=4096x4096
|
||||
<!-- prettier-ignore-end -->
|
||||
75
docs/v2/extensions/_maintained-extensions-table.md
Normal file
@ -0,0 +1,75 @@
|
||||
<table>
|
||||
<thead>
|
||||
<tr>
|
||||
<th>Extension</th>
|
||||
<th>Description</th>
|
||||
<th>Modules</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<!-- CORNERSTONE.js -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-cornerstone">
|
||||
Cornerstone
|
||||
</a>
|
||||
</td>
|
||||
<td>
|
||||
A viewport powered by <code>cornerstone.js</code>. Adds support for 2D DICOM rendering and manipulation, as well as support for the tools features in <a href="https://tools.cornerstonejs.org/examples/"><code>cornerstone-tools</code></a>. Also adds "CINE Dialog" to the Toolbar.
|
||||
</td>
|
||||
<td>Viewport, Toolbar</td>
|
||||
</tr>
|
||||
<!-- VTK.js -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-vtk">
|
||||
VTK.js
|
||||
</a>
|
||||
</td>
|
||||
<td>
|
||||
A viewport powered by <code>vtk.js</code>. Adds support for volume renderings and advanced features like MPR. Also adds "3D Rotate" to the Toolbar.
|
||||
</td>
|
||||
<td>Viewport, Toolbar</td>
|
||||
</tr>
|
||||
<!-- dicom-html -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-html">DICOM HTML</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders text and HTML content for <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js#L4-L12">specific SopClassUIDs</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
<!-- dicom-pdf -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-pdf">DICOM PDF</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders PDFs for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-pdf/src/OHIFDicomPDFSopClassHandler.js#L4-L6">specific SopClassUID</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
<!-- dicom-microscopy -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-microscopy">DICOM Microscopy</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders Microscopy images for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-microscopy/src/DicomMicroscopySopClassHandler.js#L5-L7">specific SopClassUID</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
<!-- dicom-segmentation -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-segmentation">DICOM Segmentation</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders segmentation images for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-segmentation/src/OHIFDicomSegSopClassHandler.js#L5-L7">specific SopClassUID</a>.
|
||||
</td>
|
||||
<td>Panel, Toolbar</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
240
docs/v2/extensions/index.md
Normal file
@ -0,0 +1,240 @@
|
||||
# Extensions
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Concepts](#concepts)
|
||||
- [Extension Skeleton](#extension-skeleton)
|
||||
- [Registering an Extension](#registering-an-extension)
|
||||
- [Lifecylce Hooks](#lifecycle-hooks)
|
||||
- [Modules](#modules)
|
||||
- [Contexts](#contexts)
|
||||
- [Consuming Extensions](#consuming-extensions)
|
||||
- [Extension Manager](#extensionmanager)
|
||||
- [Maintained Extensions](#maintained-extensions)
|
||||
|
||||
## Overview
|
||||
|
||||
We use extensions to help us isolate and package groups of related features.
|
||||
Extensions provide functionality, ui components, and new behaviors. Ideally,
|
||||
they're built in a way that allows them to extend entirely different
|
||||
implementations of the `@ohif/viewer` project.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/extensions-diagram.png">
|
||||
<img src="/assets/img/extensions-diagram.png" alt="Extensions Diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Diagram showing how extensions are configured and accessed.</i></div>
|
||||
</div>
|
||||
|
||||
The `@ohif/viewer`'s application level configuration gives us the ability to add
|
||||
and configure extensions. When the application starts, extensions are registered
|
||||
with the `ExtensionManager`. Different portions of the `@ohif/viewer` project
|
||||
will use registered extensions to influence application behavior.
|
||||
|
||||
Extensions allow us to:
|
||||
|
||||
- Wrap and integrate functionality of 3rd party dependencies in a reusable way
|
||||
- Change how application data is mapped and transformed
|
||||
- Display a consistent/cohesive UI
|
||||
- Inject custom components to override built-in components
|
||||
|
||||
Practical examples of extensions include:
|
||||
|
||||
- A set of segmentation tools that build on top of the `cornerstone` viewport
|
||||
- Showing ML/AI report summaries for the selected study/series/image
|
||||
- Support for parsing DICOM structured reports and displaying them in a user
|
||||
friendly way
|
||||
- [See our maintained extensions for more examples of what's possible](#maintained-extensions)
|
||||
|
||||
## Concepts
|
||||
|
||||
### Extension Skeleton
|
||||
|
||||
An extension is a plain JavaScript object that has an `id` property, and one or
|
||||
more [modules](#modules) and/or [lifecycle hooks](#lifecycle-hooks).
|
||||
|
||||
```js
|
||||
// prettier-ignore
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'example-extension',
|
||||
|
||||
// Lifecyle
|
||||
preRegistration() { /* */ },
|
||||
// Modules
|
||||
getCommandsModule() { /* */ },
|
||||
getToolbarModule() { /* */ },
|
||||
getPanelModule() { /* */ },
|
||||
getSopClassHandler() { /* */ },
|
||||
getViewportModule() { /* */ },
|
||||
}
|
||||
```
|
||||
|
||||
### Registering an Extension
|
||||
|
||||
There are two different ways to register and configure extensions: At
|
||||
[runtime](#registering-at-runtime) and at
|
||||
[build time](#registering-at-build-time).
|
||||
|
||||
You can leverage one or both strategies. Which one(s) you choose depend on your
|
||||
application's requirements. Each [module](#modules) defined by the extension
|
||||
becomes available to the core application via the `ExtensionManager`.
|
||||
|
||||
#### Registering at Runtime
|
||||
|
||||
The `@ohif/viewer` uses a [configuration file](../viewer/configuration.md) at
|
||||
startup. The schema for that file includes an `Extensions` key that supports an
|
||||
array of extensions to register.
|
||||
|
||||
```js
|
||||
// prettier-ignore
|
||||
const config = {
|
||||
extensions: [
|
||||
MyFirstExtension,
|
||||
[
|
||||
MySecondExtension,
|
||||
{ /* MySecondExtensions Configuration */ },
|
||||
],
|
||||
];
|
||||
}
|
||||
```
|
||||
|
||||
#### Registering at Build Time
|
||||
|
||||
The `@ohif/viewer` works best when built as a "Progressive Web Application"
|
||||
(PWA). If you know the extensions your application will need, you can specify
|
||||
them at "build time" to leverage advantages afforded to us by modern tooling:
|
||||
|
||||
- Code Splitting (dynamic imports)
|
||||
- Tree Shaking
|
||||
- Dependency deduplication
|
||||
|
||||
You can update the list of bundled extensions by:
|
||||
|
||||
1. Having your `@ohif/viewer` project depend on the extension
|
||||
2. Importing and adding it to the list of extensions in the
|
||||
`<repo-root>/platform/src/index.js` entrypoint.
|
||||
|
||||
### Lifecycle Hooks
|
||||
|
||||
Currently, there is only a single lifecycle hook for extensions:
|
||||
[`preRegistration`](./lifecycle/pre-registration.md)
|
||||
|
||||
If an extension defines the [`preRegistration`](./lifecycle/pre-registration.md)
|
||||
lifecycle hook, it is called before any modules are registered in the
|
||||
`ExtensionManager`. It's most commonly used to wire up extensions to
|
||||
[services](./../services/index.md) and [commands](./modules/commands.md), and to
|
||||
bootstrap 3rd party libraries.
|
||||
|
||||
### Modules
|
||||
|
||||
Modules are the meat of extensions. They provide "definitions", components, and
|
||||
filtering/mapping logic that are then made available by various managers and
|
||||
services.
|
||||
|
||||
Each module type has a special purpose, and is consumed by our viewer
|
||||
differently.
|
||||
|
||||
| Type | Description | Examples |
|
||||
| ------------------------------------------------- | ---------------------------------------------------------------- | ------------------------------------------------- |
|
||||
| [Commands](./modules/commands.md) | Adds named commands, scoped to a context, to the CommandsManager | `setToolActive()`, `nextSeries()` |
|
||||
| [Panel](./modules/panel.md) | Adds left or right hand side panels | `<ThumbnailList />`, `<MeasurementsTable />` |
|
||||
| [SOPClassHandler](./modules/sop-class-handler.md) | Determines how retrieved study data is split into "DisplaySets" | `getDisplaySetFromSeries()` |
|
||||
| [Toolbar](./modules/toolbar.md) | Adds buttons or custom components to the toolbar | Toolbar button, nested buttons, custom |
|
||||
| [Viewport](./modules/viewport.md) | Adds a component responsible for rendering a "DisplaySet" | `<CornerstoneViewport />`, `<DicomPdfViewport />` |
|
||||
|
||||
<figure style="text-align: center; font-style: italic;">Tbl. Module types with abridged descriptions and examples. Each module links to a dedicated documentation page.</figure>
|
||||
|
||||
### Contexts
|
||||
|
||||
The `@ohif/viewer` tracks "active contexts" that extensions can use to scope
|
||||
their functionality. Some example contexts being:
|
||||
|
||||
- Route: `ROUTE:VIEWER`, `ROUTE:STUDY_LIST`
|
||||
- Active Viewport: `ACTIVE_VIEWPORT:CORNERSTONE`, `ACTIVE_VIEWPORT:VTK`
|
||||
|
||||
An extension module can use these to say "Only show this Toolbar Button if the
|
||||
active viewport is a Cornerstone viewport." This helps us use the appropriate UI
|
||||
and behaviors depending on the current contexts.
|
||||
|
||||
For example, if we have hotkey that "rotates the active viewport", each Viewport
|
||||
module that supports this behavior can add a command with the same name, scoped
|
||||
to the appropriate context. When the `command` is fired, the "active contexts"
|
||||
are used to determine the appropriate implementation of the rotate behavior.
|
||||
|
||||
## Consuming Extensions
|
||||
|
||||
We consume extensions, via the `ExtensionManager`, in our `@ohif/viewer`
|
||||
project.
|
||||
|
||||
```js
|
||||
const extensionManager = new ExtensionManager({
|
||||
commandsManager,
|
||||
servicesManager,
|
||||
hotkeysManager
|
||||
});
|
||||
|
||||
// prettier-ignore
|
||||
extensionManager.registerExtensions([ /** **/ ]);
|
||||
```
|
||||
|
||||
The `@ohif/viewer` project handles data fetching, basic routing, wires up UI
|
||||
services, and is the home to the more bespoke application logic that doesn't
|
||||
make as much sense to make reusable.
|
||||
|
||||
Long-term, replacing the `@ohif/viewer` application and consuming extensions
|
||||
(and the `ExtensionManager`) in your own project is the ideal path for
|
||||
applications requiring a high degree of customization that can't be achieved
|
||||
with current theming, configuration, extension, and services support.
|
||||
|
||||
If you're not sure how to achieve your goals with the extensibility available
|
||||
today, create a GitHub issue!
|
||||
|
||||
### `ExtensionManager`
|
||||
|
||||
The `ExtensionManager` is a class made available to us via the `@ohif/core`
|
||||
project (platform/core). Our application instantiates a single instance of it,
|
||||
and provides a `ServicesManager` and `CommandsManager` along with the
|
||||
application's configuration through the appConfig key (optional).
|
||||
|
||||
```js
|
||||
const commandsManager = new CommandsManager();
|
||||
const servicesManager = new ServicesManager();
|
||||
const extensionManager = new ExtensionManager({
|
||||
commandsManager,
|
||||
servicesManager,
|
||||
appConfig,
|
||||
});
|
||||
```
|
||||
|
||||
The `ExtensionManager` only has a few public members:
|
||||
|
||||
- `registerExtension` - Registers a single extension
|
||||
- `registerExtensions` - Registers an array of extensions
|
||||
- `modules` - An object containing registered extensions by `MODULE_TYPE`
|
||||
|
||||
During registration, lifecycle hooks and modules have access to the extension's
|
||||
config, the application's config and `ExtensionManager`'s `ServicesManager` and
|
||||
`CommandsManager` instances.
|
||||
|
||||
Our `@ohif/viewer` uses the `modules` member to access registered extensions at
|
||||
appropriate places in our application.
|
||||
|
||||
## Maintained Extensions
|
||||
|
||||
A small number of powerful extensions for popular use cases are maintained by
|
||||
OHIF. They're co-located in the [`OHIF/Viewers`][viewers-repo] repository, in
|
||||
the top level [`extensions/`][ext-source] directory.
|
||||
|
||||
{% include "./_maintained-extensions-table.md" %}
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[viewers-repo]: https://github.com/OHIF/Viewers
|
||||
[ext-source]: https://github.com/OHIF/Viewers/tree/master/extensions
|
||||
[module-types]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/extensions/MODULE_TYPES.js
|
||||
<!-- prettier-ignore-end -->
|
||||
40
docs/v2/extensions/lifecycle/pre-registration.md
Normal file
@ -0,0 +1,40 @@
|
||||
# Lifecylce Hook: preRegistration
|
||||
|
||||
If an extension defines the `preRegistration` lifecycle hook, it is called
|
||||
before any modules are registered in the `ExtensionManager`. This hook can be
|
||||
used to:
|
||||
|
||||
- initialize 3rd party libraries
|
||||
- register event listeners
|
||||
- add or call services
|
||||
- add or call commands
|
||||
|
||||
The `preRegistration` hook receives an object containing the
|
||||
`ExtensionManager`'s associated `ServicesManager`, `CommandsManager`, and any
|
||||
`configuration` that was provided with the extension at time of registration.
|
||||
|
||||
_Example `preRegistration` hook implementation_
|
||||
|
||||
```js
|
||||
export default {
|
||||
id: 'MyExampleExtension',
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {object} params.configuration
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
* @returns void
|
||||
*/
|
||||
preRegistration({ servicesManager, commandsManager, configuration }) {
|
||||
console.log('Wiring up important stuff.');
|
||||
|
||||
window.importantStuff = () => {
|
||||
console.log(configuration);
|
||||
};
|
||||
|
||||
console.log('Important stuff has been wired.');
|
||||
window.importantStuff();
|
||||
},
|
||||
};
|
||||
```
|
||||
158
docs/v2/extensions/modules/commands.md
Normal file
@ -0,0 +1,158 @@
|
||||
# Module: Commands
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Command Definitions](#command-definitions)
|
||||
- [Commands Manager](#commands-manager)
|
||||
- [Instantiating](#instatiating)
|
||||
- [Public API](#public-api)
|
||||
- [Contexts](#contexts)
|
||||
|
||||
## Overview
|
||||
|
||||
An extension can register a Commands Module by defining a `getCommandsModule`
|
||||
method. The Commands Module allows us to register one or more commands scoped to
|
||||
specific [contexts](./../index.md#contexts). Commands have several unique
|
||||
characteristics that make them tremendously powerful:
|
||||
|
||||
- Multiple implementations for the same command can be defined
|
||||
- Only the correct command's implementation will be run, dependent on the
|
||||
application's "context"
|
||||
- Commands can be called from extensions, modules, and the consuming application
|
||||
|
||||
Here is a simple example commands module:
|
||||
|
||||
```js
|
||||
export default {
|
||||
id: 'example-commands-module',
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
*/
|
||||
getCommandsModule({ servicesManager, commandsManager }) {
|
||||
return {
|
||||
definitions: {
|
||||
sayHello: {
|
||||
commandFn: ({ words }) => {
|
||||
console.log(words);
|
||||
},
|
||||
options: { words: 'Hello!' },
|
||||
},
|
||||
},
|
||||
defaultContext: 'VIEWER',
|
||||
};
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
Each definition returned by the Commands Module is registered to the
|
||||
`ExtensionManager`'s `CommandsManager`.
|
||||
|
||||
## Command Definitions
|
||||
|
||||
The command definition consists of a named command (`myCommandName` below) and a
|
||||
`commandFn`. The command name is used to call the command, and the `commandFn`
|
||||
is the "command" that is actioned.
|
||||
|
||||
```js
|
||||
myCommandName: {
|
||||
commandFn: ({ viewports, other, options }) => { },
|
||||
storeContexts: ['viewports'],
|
||||
options: { words: 'Just kidding! Goodbye!' },
|
||||
context: 'ACTIVE_VIEWPORT::CORNERSTONE',
|
||||
}
|
||||
```
|
||||
|
||||
| Property | Type | Description |
|
||||
| --------------- | ------------------ | --------------------------------------------------------------------------------------------------------------------------------------- |
|
||||
| `commandFn` | func | The function to call when command is run. Receives `options` and `storeContexts`. |
|
||||
| `storeContexts` | string[] | (optional) Expected state objects to be passed in as props. Located using `getAppState` fn defined at `CommandsManager`'s instatiation. |
|
||||
| `options` | object | (optional) Arguments to pass at the time of calling to the `commandFn` |
|
||||
| `context` | string[] or string | (optional) Overrides the `defaultContext`. Let's us know if command is currently "available" to be run. |
|
||||
|
||||
## Command Behavior
|
||||
|
||||
**I have many similar commands. How can I share their `commandFn` and make it
|
||||
reusable?**
|
||||
|
||||
This is where `storeContexts` and `options` come in. We use these in our
|
||||
`setToolActive` command. `storeContexts` helps us identify our `activeViewport`,
|
||||
and `options` allow us to pass in the name of a tool we would like to set as
|
||||
active.
|
||||
|
||||
**If there are multiple valid commands for the application's active contexts**
|
||||
|
||||
- What happens: all commands are run
|
||||
- When to use: A `clearData` command that cleans up state for multiple
|
||||
extensions
|
||||
|
||||
**If no commands are valid for the application's active contexts**
|
||||
|
||||
- What happens: a warning is printed to the console
|
||||
- When to use: a `hotkey` (like "invert") that doesn't make sense for the
|
||||
current viewport (PDF or HTML)
|
||||
|
||||
## `CommandsManager`
|
||||
|
||||
The `CommandsManager` is a class defined in the `@ohif/core` project. A single
|
||||
instance of it should be defined in the consuming application, and it should be
|
||||
used when constructing the `ExtensionManager`.
|
||||
|
||||
### Instantiating
|
||||
|
||||
When we instantiate the `CommandsManager`, we need to pass it two methods:
|
||||
|
||||
- `getAppState` - Should return the application's state when called
|
||||
- `getActiveContexts` - Should return the application's active contexts when
|
||||
called
|
||||
|
||||
These methods are used internally to help determine which commands are currently
|
||||
valid, and how to provide them with any state they may need at the time they are
|
||||
called.
|
||||
|
||||
```js
|
||||
const commandsManager = new CommandsManager({
|
||||
getAppState,
|
||||
getActiveContexts,
|
||||
});
|
||||
```
|
||||
|
||||
### Public API
|
||||
|
||||
If you would like to run a command in the consuming app or an extension, you can
|
||||
use one of the following methods:
|
||||
|
||||
```js
|
||||
// Returns all commands for a given context
|
||||
commandsManager.getContext('string');
|
||||
|
||||
// Attempts to run a command
|
||||
commandsManager.runCommand('speak', { command: 'hello' });
|
||||
|
||||
// Run command, but override the active contexts
|
||||
commandsManager.runCommand('speak', { command: 'hello' }, ['VIEWER']);
|
||||
```
|
||||
|
||||
The `ExtensionManager` handles registering commands and creating contexts, so
|
||||
most consumer's won't need these methods. If you find yourself using these, ask
|
||||
yourself "why can't I register these commands via an extension?"
|
||||
|
||||
```js
|
||||
// Used by the `ExtensionManager` to register new commands
|
||||
commandsManager.registerCommand('context', 'name', commandDefinition);
|
||||
|
||||
// Creates a new context; clears the context if it already exists
|
||||
commandsManager.createContext('string');
|
||||
```
|
||||
|
||||
### Contexts
|
||||
|
||||
It is up to the consuming application to define what contexts are possible, and
|
||||
which ones are currently active. As extensions depend heavily on these, we will
|
||||
likely publish guidance around creating contexts, and ways to override extension
|
||||
defined contexts in the near future. If you would like to discuss potential
|
||||
changes to how contexts work, please don't hesistate to createa new GitHub
|
||||
issue.
|
||||
|
||||
[Some additional information on Contexts can be found here.](./../index.md#contexts)
|
||||
61
docs/v2/extensions/modules/panel.md
Normal file
@ -0,0 +1,61 @@
|
||||
# Module: Panel
|
||||
|
||||
An extension can register a Panel Module by defining a `getPanelModule` method.
|
||||
The panel module provides the ability to define `menuOptions` and `components`
|
||||
that can be used by the consuming application. `components` are React Components
|
||||
that can be displayed in the consuming application's "Panel" Component.
|
||||
|
||||

|
||||
|
||||
<center><i>A panel extension example</i></center>
|
||||
|
||||
The `menuOptions`'s `target` key points to a registered `components`'s `id`. A
|
||||
`defaultContext` is applied to all `menuOption`s; however, each `menuOption` can
|
||||
optional provide it's own `context` value.
|
||||
|
||||
The `getPanelModule` receives an object containing the `ExtensionManager`'s
|
||||
associated `ServicesManager` and `CommandsManager`.
|
||||
|
||||
```js
|
||||
import MyComponent from './MyComponent.js';
|
||||
|
||||
export default {
|
||||
id: 'example-panel-module',
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
*/
|
||||
getPanelModule({ servicesManager, commandsManager }) {
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
// A suggested icon
|
||||
// Available icons determined by consuming app
|
||||
icon: 'list',
|
||||
// A suggested label
|
||||
label: 'Magic',
|
||||
// 'right' or 'left'
|
||||
from: 'right',
|
||||
// The target component to toggle open/close
|
||||
target: 'target-component-id',
|
||||
// UI Hint; If the target panel is in a "disabled" state
|
||||
isDisabled: studies => {
|
||||
return false;
|
||||
},
|
||||
// Overrides `defaultContext`, if specified
|
||||
context: ['ACTIVE_VIEWPORT:MAGIC'],
|
||||
},
|
||||
],
|
||||
components: [
|
||||
{
|
||||
id: 'target-component-id',
|
||||
component: MyComponent,
|
||||
},
|
||||
],
|
||||
defaultContext: ['ROUTE:VIEWER'],
|
||||
};
|
||||
},
|
||||
};
|
||||
```
|
||||
105
docs/v2/extensions/modules/sop-class-handler.md
Normal file
@ -0,0 +1,105 @@
|
||||
# Module: SOP Class Handler
|
||||
|
||||
An extension can register a [SOP Class][sop-class-link] Handler Module by
|
||||
defining a `getSopClassHandlerModule` method. The [SOP Class][sop-class-link]
|
||||
Handler is a bit different from the other modules, as it doesn't provide a `1:1`
|
||||
schema for UI or provide it's own components. It instead defines:
|
||||
|
||||
- `sopClassUIDs`: an array of string SOP Class UIDs that the
|
||||
`getDisplaySetFromSeries` method should be applied to.
|
||||
- `getDisplaySetFromSeries`: a method that maps series and study metadata to a
|
||||
display set
|
||||
|
||||
A `displaySet` has the following shape:
|
||||
|
||||
```js
|
||||
return {
|
||||
plugin: 'html',
|
||||
Modality: 'SR',
|
||||
displaySetInstanceUID: 0,
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
authorizationHeaders,
|
||||
};
|
||||
```
|
||||
|
||||
Where the `plugin` key is used to influence the default `ViewportComponent` for
|
||||
rendering the `displaySet`. Additional properties are passed to the
|
||||
`ViewportComponent` and used by the default `StudyBrowser` to render
|
||||
"thumbnails" for each `displaySet`
|
||||
|
||||
## Example SOP Class Handler Module
|
||||
|
||||
```js
|
||||
const SOP_CLASS_UIDS = {
|
||||
BASIC_TEXT_SR: '1.2.840.10008.5.1.4.1.1.88.11',
|
||||
ENHANCED_SR: '1.2.840.10008.5.1.4.1.1.88.22',
|
||||
};
|
||||
|
||||
export default {
|
||||
id: 'example-sop-class-handler-module',
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
*/
|
||||
getSopClassHandlerModule({ servicesManager, commandsManager }) {
|
||||
return {
|
||||
id: 'OHIFDicomHtmlSopClassHandler',
|
||||
sopClassUIDs: Object.values(SOP_CLASS_UIDS),
|
||||
|
||||
/**
|
||||
* @param {object} series -
|
||||
* @param {object} study -
|
||||
* @param {object} dicomWebClient -
|
||||
* @param {object} authorizationHeaders -
|
||||
*/
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient, authorizationHeaders) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
return {
|
||||
plugin: 'html',
|
||||
displaySetInstanceUID: 0,
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
authorizationHeaders,
|
||||
};
|
||||
},
|
||||
}
|
||||
};
|
||||
```
|
||||
|
||||
### More examples :
|
||||
|
||||
- [Dicom-HTML SOP][dicom-html-sop]
|
||||
- [Dicom-PDF SOP][dicom-pdf-sop]
|
||||
- [Dicom-Microscopy SOP][dicom-micro-sop]
|
||||
- [Dicom-Segmentation SOP][dicom-seg-sop]
|
||||
|
||||
## `@ohif/viewer` usage
|
||||
|
||||
We use the `sopClassHandlerModule`s in three different places:
|
||||
|
||||
- `ViewerLocalFileData.js`
|
||||
- `ViewerRetrieveStudyData.js`
|
||||
- `StandaloneRouting.js`
|
||||
|
||||
Each time, it is used to map study and series data to `displaySets`. It does
|
||||
this by working alongside the `StudyMetadataManager` in `@ohif/core`. That
|
||||
manager has the method `createDisplaySets` that takes an array of
|
||||
`sopClassHandlerModules`.
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[sop-class-link]: http://dicom.nema.org/dicom/2013/output/chtml/part04/sect_B.5.html
|
||||
[dicom-html-sop]: https://github.com/OHIF/Viewers/blob/master/extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js#L4-L12
|
||||
[dicom-pdf-sop]: https://github.com/OHIF/Viewers/blob/master/extensions/dicom-pdf/src/OHIFDicomPDFSopClassHandler.js#L4-L6
|
||||
[dicom-micro-sop]: https://github.com/OHIF/Viewers/blob/master/extensions/dicom-microscopy/src/DicomMicroscopySopClassHandler.js#L5-L7
|
||||
[dicom-seg-sop]: https://github.com/OHIF/Viewers/blob/master/extensions/dicom-segmentation/src/OHIFDicomSegSopClassHandler.js#L5-L7
|
||||
<!-- prettier-ignore-end -->
|
||||
130
docs/v2/extensions/modules/toolbar.md
Normal file
@ -0,0 +1,130 @@
|
||||
# Module: Toolbar
|
||||
|
||||
An extension can register a Toolbar Module by defining a `getToolbarModule`
|
||||
method. This module is commonly used to define:
|
||||
|
||||
- [Toolbar buttons](#button-definitions)
|
||||
- [Nested toolbar menus](#nested-toolbar-menus)
|
||||
- [Custom components](#custom-components)
|
||||
|
||||

|
||||
|
||||
<center><i>Example toolbar button using the Dialog Service to show CINE controls.</i></center>
|
||||
|
||||
## Example Toolbar Module
|
||||
|
||||
The Toolbar Module should return an array of `definitions` and a
|
||||
`defaultContext`. There are currently a few different variations of definitions,
|
||||
each one is detailed further down.
|
||||
|
||||
```js
|
||||
export default {
|
||||
id: 'example-toolbar-module',
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
*/
|
||||
getToolbarModule({ servicesManager, commandsManager }) {
|
||||
return {
|
||||
definitions: [
|
||||
/* Array of definitions */
|
||||
],
|
||||
defaultContext: ['ROUTE:VIEWER'],
|
||||
};
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
## Button Definitions
|
||||
|
||||
The simplest definition has the following properties:
|
||||
|
||||
```js
|
||||
{
|
||||
id: 'StackScroll',
|
||||
label: 'Stack Scroll',
|
||||
icon: 'bars',
|
||||
type: 'setToolActive',
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'StackScroll' },
|
||||
},
|
||||
```
|
||||
|
||||
| property | description | values |
|
||||
| ---------------- | ----------------------------------------------------------------- | ----------------------------------------- |
|
||||
| `id` | Unique string identifier for the definition | \* |
|
||||
| `label` | User/display friendly to show in UI | \* |
|
||||
| `icon` | A string name for an icon supported by the consuming application. | \* |
|
||||
| `type` | Used to determine the button's component and behavior | `"setToolActive"`, `"command"` |
|
||||
| `commandName` | (optional) The command to run when the button is used. | Any command registed by a `CommandModule` |
|
||||
| `commandOptions` | (optional) Options to pass the target `commandName` | \* |
|
||||
| `context` | (optional) Overrides module's `defaultContext` | Array of string context names |
|
||||
|
||||
Where a button with a `type` of `setToolActive` has an "active" styling applied
|
||||
when clicked; removing the active styling from all other buttons.
|
||||
|
||||
## Nested Toolbar Menus
|
||||
|
||||
You can indicate that buttons should be grouped and nested in a submenu by
|
||||
including `buttons` property in a definition:
|
||||
|
||||
```js
|
||||
{
|
||||
id: 'More',
|
||||
label: 'More',
|
||||
icon: 'ellipse-circle',
|
||||
buttons: [
|
||||
{
|
||||
id: 'cstInvert',
|
||||
label: 'Invert',
|
||||
icon: 'circle',
|
||||
type: 'command',
|
||||
commandName: 'invertViewport',
|
||||
},
|
||||
],
|
||||
},
|
||||
```
|
||||
|
||||

|
||||
|
||||
<center><i>Example toolbar button demonstrating nested buttons.</i></center>
|
||||
|
||||
## Custom Components
|
||||
|
||||
The Toolbar Modules supports rendering custom components in place of the
|
||||
application's default. In place of the `type`, `commandName`, and
|
||||
`commandOptions` properties, we instead specify a `CustomComponent`.
|
||||
|
||||
```js
|
||||
{
|
||||
id: 'Custom',
|
||||
label: 'Custom',
|
||||
icon: 'custom-icon',
|
||||
CustomComponent: CustomToolbarComponent,
|
||||
}
|
||||
|
||||
```
|
||||
|
||||
The `CustomComponent` components will receive the following props:
|
||||
|
||||
```html
|
||||
<CustomComponent
|
||||
parentContext="{parentContext}"
|
||||
toolbarClickCallback="{_handleToolbarButtonClick.bind(this)}"
|
||||
button="{button}"
|
||||
key="{button.id}"
|
||||
activeButtons="{activeButtonsIds}"
|
||||
isActive="{isActive}"
|
||||
/>
|
||||
```
|
||||
|
||||
| Property | Type | Description |
|
||||
| ---------------------- | -------- | ------------------------------- |
|
||||
| `activeButtons` | string[] | list of active buttons |
|
||||
| `button` | object | its own definition object |
|
||||
| `key` | string | React key prop |
|
||||
| `isActive` | boolean | If current button is active |
|
||||
| `parentContext` | ? | The parent component's context? |
|
||||
| `toolbarClickCallback` | func | Callback method for clicks |
|
||||
46
docs/v2/extensions/modules/viewport.md
Normal file
@ -0,0 +1,46 @@
|
||||
# Module: Viewport
|
||||
|
||||
An extension can register a Viewport Module by defining a `getViewportModule`
|
||||
method that returns a React component. Currently, we use viewport components to
|
||||
add support for:
|
||||
|
||||
- 2D Medical Image Viewing (cornerstone ext.)
|
||||
- Structured Reports as HTML (dicom html ext.)
|
||||
- Encapsulated PDFs as PDFs (dicom pdf ext.)
|
||||
- Whole Slide Microscopy Viewing (whole slide ext.)
|
||||
- etc.
|
||||
|
||||
The general pattern is, the [`sopClassHandlerModule`](#) helps us determine
|
||||
which Viewport Component a set of `sopClassUIDs` should default to. The Viewport
|
||||
Component receives props containing a display set it should know how to render.
|
||||
|
||||
## Viewport Component Props
|
||||
|
||||
Each `ViewportComponent` will receive the following props:
|
||||
|
||||
```html
|
||||
<viewportComponent
|
||||
viewportData="{viewportData}"
|
||||
viewportIndex="{viewportIndex}"
|
||||
children="{[children]}"
|
||||
/>
|
||||
```
|
||||
|
||||
| Property | Type | Description |
|
||||
| --------------- | --------------- | --------------------------------- |
|
||||
| `children` | React.element[] | |
|
||||
| `viewportData` | object | `viewportSpecificData` (probably) |
|
||||
| `viewportIndex` | number | |
|
||||
|
||||
### `@ohif/viewer`
|
||||
|
||||
Viewport components are managed by the `ViewportGrid` Component. Which Viewport
|
||||
component is used depends on:
|
||||
|
||||
- The Layout Configuration
|
||||
- Registered SopClassHandlers
|
||||
- The SopClassUID for visible/selected datasets
|
||||
|
||||

|
||||
|
||||
<center><i>An example of three cornerstone Viewports</i></center>
|
||||
47
docs/v2/faq/browser-support.md
Normal file
@ -0,0 +1,47 @@
|
||||
# Browser Support
|
||||
|
||||
The browsers that we support are specified in the `.browserlistrc` file located
|
||||
in the `platform/viewer` project. While we leverage the latest language features
|
||||
when writing code, we rely on `babel` to _transpile_ our code so that it can run
|
||||
in the browsers that we support.
|
||||
|
||||
## In Practice
|
||||
|
||||
The OHIF Viewer is capable of _running_ on:
|
||||
|
||||
- IE 11
|
||||
- FireFox
|
||||
- Chrome
|
||||
- Safari
|
||||
- Edge
|
||||
|
||||
However, we do not have the resources to adequately test and maintain bug free
|
||||
functionality across all of these. In order to push web based medical imaging
|
||||
forward, we focus our development efforts on recent version of modern evergreen
|
||||
browsers.
|
||||
|
||||
Our support of older browsers equates to our willingness to review PRs for bug
|
||||
fixes, and target their minimum JS support whenever possible.
|
||||
|
||||
### Polyfills
|
||||
|
||||
> A polyfill, or polyfiller, is a piece of code (or plugin) that provides the
|
||||
> technology that you, the developer, expect the browser to provide natively.
|
||||
|
||||
An example of a polyfill is that you expect `Array.prototype.filter` to exist,
|
||||
but for some reason, the browser that's being used has not implemented that
|
||||
language feature yet. Our earlier transpilation will rectify _syntax_
|
||||
discrepencies, but unimplemented features require a "temporary" implementation.
|
||||
That's where polyfills step in.
|
||||
|
||||
You can utilize a service like [polyfill.io](https://polyfill.io/v3/) to
|
||||
auto-detect and apply polyfills as needed, or you can update the PWA build to
|
||||
include polyfill's in your bundle by incorporating [core-js][core-js]
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[core-js]: https://github.com/zloirock/core-js/blob/master/docs/2019-03-19-core-js-3-babel-and-a-look-into-the-future.md
|
||||
<!-- prettier-ignore-end -->
|
||||
81
docs/v2/faq/index.md
Normal file
@ -0,0 +1,81 @@
|
||||
# Frequently Asked Questions
|
||||
|
||||
## Index
|
||||
|
||||
- [Report a bug][report-bug]
|
||||
- [Request a feature][new-feature]
|
||||
- [Commercial Support & Consulting][commercial-support]
|
||||
- [Academic collaborations][academic]
|
||||
- [FDA Clearance or CE Marking][fda-clearance]
|
||||
- [HIPAA Compliance][hipaa]
|
||||
|
||||
### How do I report a bug?
|
||||
|
||||
Navigate to our [GitHub Repository][new-issue], and submit a new bug report.
|
||||
Follow the steps outlined in the [Bug Report Template][bug-report-template].
|
||||
|
||||
### How can I request a new feature?
|
||||
|
||||
At the moment we are in the process of defining our roadmap and will do our best
|
||||
to communicate this to the community. If your requested feature is on the
|
||||
roadmap, then it will most likely be built at some point. If it is not, you are
|
||||
welcome to build it yourself and [contribute it](development/contributing.md).
|
||||
If you have resources and would like to fund the development of a feature,
|
||||
please [contact us](http://www.ohif.org) or work with community members that
|
||||
offer [consulting services][commercial-support].
|
||||
|
||||
### Who should I contact about Academic Collaborations?
|
||||
|
||||
[Gordon J. Harris](http://www.dfhcc.harvard.edu/insider/member-detail/member/gordon-j-harris-phd/)
|
||||
at Massachusetts General Hospital is the primary contact for any academic
|
||||
collaborators. We are always happy to hear about new groups interested in using
|
||||
the OHIF framework, and may be able to provide development support if the
|
||||
proposed collaboration has an impact on cancer research.
|
||||
|
||||
### Does OHIF offer commercial support?
|
||||
|
||||
The Open Health Imaging Foundation does not offer commercial support, however,
|
||||
some community members do offer consulting services. The following contacts may
|
||||
be useful:
|
||||
|
||||
- Rob Lewis ([Radical Imaging](http://radicalimaging.com/))
|
||||
|
||||
**Please file a Pull Request if you wish to add your name or organization to
|
||||
this list.**
|
||||
|
||||
### Does The OHIF Viewer have [510(k) Clearance][501k-clearance] from the U.S. F.D.A or [CE Marking][ce-marking] from the European Commission?
|
||||
|
||||
**NO.** The OHIF Viewer is **NOT** F.D.A. cleared or CE Marked. It is the users
|
||||
responsibility to ensure compliance with applicable rules and regulations. The
|
||||
[License](https://github.com/OHIF/Viewers/blob/master/LICENSE) for the OHIF
|
||||
Platform does not prevent your company or group from seeking F.D.A. clearance
|
||||
for a product built using the platform.
|
||||
|
||||
If you have gone this route (or are going there), please let us know because we
|
||||
would be interested to hear about your experience.
|
||||
|
||||
### Is The OHIF Viewer [HIPAA][hipaa-def] Compliant?
|
||||
|
||||
**NO.** The OHIF Viewer **DOES NOT** fulfill all of the criteria to become HIPAA
|
||||
Compliant. It is the users responsibility to ensure compliance with applicable
|
||||
rules and regulations.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- INDEX -->
|
||||
[report-bug]: #how-do-i-report-a-bug
|
||||
[new-feature]: #how-can-i-request-a-new-feature
|
||||
[commercial-support]: #does-ohif-offer-commercial-support
|
||||
[academic]: #who-should-i-contact-about-academic-collaborations
|
||||
[fda-clearance]: #does-the-ohif-viewer-have-510k-clearance-from-the-us-fda-or-ce-marking-from-the-european-commission
|
||||
[hipaa]: #is-the-ohif-viewer-hipaa-compliant
|
||||
<!-- OTHER -->
|
||||
[501k-clearance]: https://www.fda.gov/MedicalDevices/DeviceRegulationandGuidance/HowtoMarketYourDevice/PremarketSubmissions/PremarketNotification510k/
|
||||
[ce-marking]: https://ec.europa.eu/growth/single-market/ce-marking_en
|
||||
[hipaa-def]: https://en.wikipedia.org/wiki/Health_Insurance_Portability_and_Accountability_Act
|
||||
[new-issue]: https://github.com/OHIF/Viewers/issues/new/choose
|
||||
[bug-report-template]: https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Bug+Report+%3Abug%3A&template=---bug-report.md&title=
|
||||
<!-- prettier-ignore-end -->
|
||||
56
docs/v2/faq/pwa-vs-packaged.md
Normal file
@ -0,0 +1,56 @@
|
||||
# PWA vs Packaged
|
||||
|
||||
It's important to know that the OHIF Viewer project provides two different build
|
||||
processes:
|
||||
|
||||
```bash
|
||||
# Static Asset output: For deploying PWAs
|
||||
yarn run build
|
||||
|
||||
# Single `.js` script, for embedding viewer into existing apps
|
||||
yarn run build:package
|
||||
```
|
||||
|
||||
## Progressive Web Application (PWA)
|
||||
|
||||
> [Progressive Web Apps][pwa] are a new breed of web applications that meet the
|
||||
> [following requirements][pwa-checklist]. Notably, targeting a PWA allows us
|
||||
> provide a reliable, fast, and engaging experience across different devices and
|
||||
> network conditions.
|
||||
|
||||
The OHIF Viewer is maintained as a [monorepo][monorepo]. We use WebPack to build
|
||||
the many small static assets that comprise our application. Also generated is an
|
||||
`index.html` that will serve as an entry point for loading configuration and the
|
||||
application, as well as a `service-worker` that can intelligently cache files so
|
||||
that subsequent requests are from the local file system instead of over the
|
||||
network.
|
||||
|
||||
You can read more about this particular strategy in our
|
||||
[Build for Production Deployment Guide](./../deployment/recipes/build-for-production.md)
|
||||
|
||||
## Commonjs Bundle (Packaged Script)
|
||||
|
||||
The [@ohif/viewer][viewer-npm] package is built with WebPack to provide a React
|
||||
component that can be dropped into a larger application. The `OHIFViewer`
|
||||
component is the entire viewer, configurable via React `props`. This is useful
|
||||
for including the OHIF Viewer in a larger web application, as the entire
|
||||
application can be provided via a `<script>` tag with no build process required.
|
||||
|
||||
The bundle is not as performant or as optimized as the PWA build. It includes
|
||||
fonts, styles, and the core extensions. If you find yourself facing performance
|
||||
issues, you may wish to tweak what's included in this bundle or switch to the
|
||||
PWA build.
|
||||
|
||||
You can read more about this particular strategy in our
|
||||
[Embedded Viewer Deployment Guide](./../deployment/recipes/embedded-viewer.md)
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[pwa]: https://developers.google.com/web/progressive-web-apps/
|
||||
[pwa-checklist]: https://developers.google.com/web/progressive-web-apps/checklist
|
||||
[monorepo]: https://github.com/OHIF/Viewers/issues/768
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
<!-- prettier-ignore-end -->
|
||||
66
docs/v2/faq/scope-of-project.md
Normal file
@ -0,0 +1,66 @@
|
||||
# Scope of Project
|
||||
|
||||
The OHIF Viewer is a web based medical imaging viewer. This allows it to be used
|
||||
on almost any device, anywhere. The OHIF Viewer is what is commonly reffered to
|
||||
as a ["Dumb Client"][simplicable]
|
||||
|
||||
> A dumb client is software that fully depends on a connection to a server or
|
||||
> cloud service for its functionality. Without a network connection, the
|
||||
> software offers nothing useful. - [simplicable.com][simplicable]
|
||||
|
||||
While the Viewer persists some data, it's scope is limited to caching things
|
||||
like user preferences and previous query paramaters. Because of this, the Viewer
|
||||
has been built to be highly configurable to work with almost any web accessible
|
||||
data source.
|
||||
|
||||

|
||||
|
||||
To be more specific, the OHIF Viewer is a collection of HTML, JS, and CSS files.
|
||||
These can be delivered to your end users however you would like:
|
||||
|
||||
- From the local networok
|
||||
- From a remote web server
|
||||
- From a CDN (content delivery network)
|
||||
- From a service-worker's cache
|
||||
- etc.
|
||||
|
||||
These "static asset" files are referred to collectively as a "Progressive Web
|
||||
Application" (PWA), and have the same capabilities and limitations that all PWAs
|
||||
have.
|
||||
|
||||
All studies, series, images, imageframes, metadata, and the images themselves
|
||||
must come from an external source. There are many, many ways to provide this
|
||||
information, the OHIF Viewer's scope **DOES NOT** encompass providing _any_
|
||||
data; only the configuration necessary to interface with one or more of these
|
||||
many data sources. The OHIF Viewer's scope **DOES** include configuration and
|
||||
support for services that are protected with OpenID-Connect.
|
||||
|
||||
In an effort to aide our users and contributors, we attempt to provide several
|
||||
[deployment and hosting recipes](./deployment/index.md) as potential starting
|
||||
points. These are not meant to be rock solid, production ready, solutions; like
|
||||
most recipes, they should be augmented to best fit you and your organization's
|
||||
taste, preferences, etc.
|
||||
|
||||
## FAQ
|
||||
|
||||
_Am I able to cache studies for offline viewing?_
|
||||
|
||||
Not currently. A web page's offline cache capabilities are limited and somewhat
|
||||
volatile (mostly imposed at the browser vendor level). For more robust offline
|
||||
caching, you may want to consider a server on the local network, or packaging
|
||||
the OHIF Viewer as a desktop application.
|
||||
|
||||
_Does the OHIF Viewer work with the local filesystem?_
|
||||
|
||||
It is possible to accomplish this through extensions; however, for an user
|
||||
experience that accomodates a large number of studies, you would likely need to
|
||||
package the OHIF Viewer as an [Electron app][electron].
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[simplicable]: https://simplicable.com/new/dumb-client
|
||||
[electron]: https://electronjs.org/
|
||||
<!-- prettier-ignore-end -->
|
||||
39
docs/v2/help.md
Normal file
@ -0,0 +1,39 @@
|
||||
# Help
|
||||
|
||||
We all need a little help sometimes. Don't let a few roadblocks stand in the way
|
||||
of you building something awesome.
|
||||
|
||||
## Community Support
|
||||
|
||||
If you're a developer looking to contribute code, documentation, or discussion;
|
||||
we are more than happy to help provide clarification and answer questions via
|
||||
[GitHub issues][gh-issues] or our [community forum][google-group]. Regular
|
||||
contributors may also be invited to join our Slack Group to streamline
|
||||
discussion.
|
||||
|
||||
For bug reports and feature requests (including incomplete or confusing
|
||||
documentation), [GitHub issues][gh-issues] continue to be your best avenue of
|
||||
communication.
|
||||
|
||||
Complex issues specific to your organization/situation are still okay to post,
|
||||
but they're less likely to receive a response. Unfortunately, we have limited
|
||||
resources and must be judicious with how we allocate them. If you find yourself
|
||||
in this situation and in need of assistance, it may be in your best interest to
|
||||
persue paid support.
|
||||
|
||||
## Commercial Support
|
||||
|
||||
The Open Health Imaging Foundation does not offer commercial support, however,
|
||||
some community members do offer consulting services:
|
||||
|
||||
- Rob Lewis ([Radical Imaging](http://radicalimaging.com/))
|
||||
|
||||
**Please file a Pull Request if you wish to add your name or organization to
|
||||
this list.**
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
[gh-issues]: https://github.com/OHIF/Viewers/issues/
|
||||
[google-group]: https://groups.google.com/forum/#!forum/cornerstone-platform
|
||||
160
docs/v2/our-process.md
Normal file
@ -0,0 +1,160 @@
|
||||
# Our Process
|
||||
|
||||
Our process is a living, breathing thing. We strive to have regular
|
||||
[retrospectives][retrospective] that help us shape and adapt our process to our
|
||||
team's current needs. This document attempts to capture the broad strokes of
|
||||
that process in an effort to:
|
||||
|
||||
- Strengthen community member involvement and understanding
|
||||
- Welcome feedback and helpful suggestions
|
||||
|
||||
## Overview
|
||||
|
||||
- [Issue Triage](#issue-triage)
|
||||
- [Issue Curation ("backlog grooming")](#issue-curation-backlog-grooming)
|
||||
- [Contributions (Pull Requests)](#contributions-pull-requests)
|
||||
- [Releases](#releases)
|
||||
|
||||
_Include issue lifecycle diagram_
|
||||
|
||||
## Issue Triage
|
||||
|
||||
[GitHub issues][gh-issues] are the best way to provide feedback, ask questions,
|
||||
and suggest changes to the OHIF Viewer's core team. Community issues generally
|
||||
fall into one of three categories, and are marked with a `triage` label when
|
||||
created.
|
||||
|
||||
| Issue Template Name | Description |
|
||||
| ---------------------- | ---------------------------------------------------------------------------------------- |
|
||||
| Community: Report 🐛 | Describe a new issue; Provide steps to reproduce; Expected versus actual result? |
|
||||
| Community: Request ✋ | Describe a proposed new feature. Why should it be implemented? What is the impact/value? |
|
||||
| Community: Question ❓ | Seek clarification or assistance relevant to the repository. |
|
||||
|
||||
_table 1. issue template names and descriptions_
|
||||
|
||||
Issues that require `triage` are akin to support tickets. As this is often our
|
||||
first contact with would-be adopters and contributors, it's important that we
|
||||
strive for timely responses and satisfactory resolutions. We attempt to
|
||||
accomplish this by:
|
||||
|
||||
1. Responding to issues requiring `triage` at least once a week
|
||||
2. Create new "official issues" from "community issues"
|
||||
3. Provide clear guidance and next steps (when applicable)
|
||||
4. Regularly clean up old (stale) issues
|
||||
|
||||
> :pencil: Less obviously, patterns in the issues being reported can highlight
|
||||
> areas that need improvement. For example, users often have difficulty
|
||||
> navigating CORS issues when deploying the OHIF Viewer -- how do we best reduce
|
||||
> our ticket volume for this issue?
|
||||
|
||||
### Backlogged Issues
|
||||
|
||||
Community issues serve as vehicles of discussion that lead us to "backlogged
|
||||
issues". Backlogged issues are the distilled and actionable information
|
||||
extracted from community issues. They contain the scope and requirements
|
||||
necessary for hand-off to a core-team (or community) contributor ^\_^
|
||||
|
||||
| Category | Description | Labels |
|
||||
| -------- | ---------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ |
|
||||
| Bugs | An issue with steps that produce a bug (an unexpected result). | [Bug: Verified 🐛][label-bug] |
|
||||
| Stories | A feature/enhancement with a clear benefit, boundaries, and requirements. | [Story 🙌][label-story] |
|
||||
| Tasks | Changes that improve [UX], [DX], or test coverage; but don't impact application behavior | [Task: CI/Tooling 🤖][label-tooling], [Task: Docs 📖][label-docs], [Task: Refactor 🛠][label-refactor], [Task: Tests 🔬][label-tests] |
|
||||
|
||||
_table 2. backlogged issue types ([full list of labels][gh-labels])_
|
||||
|
||||
## Issue Curation (["backlog grooming"][groom-backlog])
|
||||
|
||||
If a [GitHub issue][gh-issues] has a `bug`, `story`, or `task` label; it's on
|
||||
our backlog. If an issue is on our backlog, it means we are, at the very least,
|
||||
committed to reviewing any community drafted Pull Requests to complete the
|
||||
issue. If you're interested in seeing an issue completed but don't know where to
|
||||
start, please don't hesitate to leave a comment!
|
||||
|
||||
While we don't yet have a long-term or quarterly road map, we do regularly add
|
||||
items to our ["Active Development" GitHub Project Board][gh-board]. Items on
|
||||
this project board are either in active development by Core Team members, or
|
||||
queued up for development as in-progress items are completed.
|
||||
|
||||
> 🖋 Want to contribute but not sure where to start? Check out [Up for
|
||||
> grabs][label-grabs] issues and our [Contributing
|
||||
> documentation][contributing-docs]
|
||||
|
||||
## Contributions (Pull Requests)
|
||||
|
||||
Incoming Pull Requests (PRs) are triaged using the following labels. Code review
|
||||
is performed on all PRs where the bug fix or added functionality is deemed
|
||||
appropriate:
|
||||
|
||||
| Labels | Description |
|
||||
| ---------------------------------------------- | ----------------------------------------------------------------------------------------------------------- |
|
||||
| **Classification** | |
|
||||
| [PR: Bug Fix][label-bug] | Filed to address a Bug. |
|
||||
| [PR: Draft][draft] | Filed to gather early feedback from the core team, but which is not intended for merging in the short term. |
|
||||
| **Review Workflow** | |
|
||||
| [PR: Awaiting Response 💬][awaiting-response] | The core team is waiting for additional information from the author. |
|
||||
| [PR: Awaiting Review 👀][awaiting-review] | The core team has not yet performed a code review. |
|
||||
| [PR: Awaiting Revisions 🖊][awaiting-revisions] | Following code review, this label is applied until the author has made sufficient changes. |
|
||||
| **QA** | |
|
||||
| [PR: Awaiting User Cases 💃][awaiting-stories] | The PR code changes need common language descriptions of impact to end users before the review can start |
|
||||
| [PR: No UX Impact 🙃][no-ux-impact] | The PR code changes do not impact the user's experience |
|
||||
|
||||
We rely on GitHub Checks and integrations with third party services to evaluate
|
||||
changes in code quality and test coverage. Tests must pass and User cases must
|
||||
be present (when applicable) before a PR can be merged to master, and code
|
||||
quality and test coverage must not changed by a significant margin. For some
|
||||
repositories, visual screenshot-based tests are also included, and video
|
||||
recordings of end-to-end tests are stored for later review.
|
||||
|
||||
[You can read more about our continous integration efforts here](/development/continous-integration.md)
|
||||
|
||||
## Releases
|
||||
|
||||
Releases are made automatically based on the type of commits which have been
|
||||
merged (major.minor.patch). Releases are automatically pushed to NPM. Release
|
||||
notes are automatically generated. Users can subscribe to GitHub and NPM
|
||||
releases.
|
||||
|
||||
We host development, staging, and production environments for the Progressive
|
||||
Web Application version of the OHIF Viewer. [Development][ohif-dev] always
|
||||
reflects the latest changes on our master branch. [Staging][ohif-stage] is used
|
||||
to regression test a release before a bi-weekly deploy to our [Production
|
||||
environment][ohif-prod].
|
||||
|
||||
Important announcements are made on GitHub, tagged as Announcement, and pinned
|
||||
so that they remain at the top of the Issue page.
|
||||
|
||||
The Core team occasionally performs full manual testing to begin the process of
|
||||
releasing a Stable version. Once testing is complete, the known issues are
|
||||
addressed and a Stable version is released.
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[groom-backlog]: https://www.agilealliance.org/glossary/backlog-grooming
|
||||
[retrospective]: https://www.atlassian.com/team-playbook/plays/retrospective
|
||||
[gh-issues]: https://github.com/OHIF/Viewers/issues/new/choose
|
||||
[gh-labels]: https://github.com/OHIF/Viewers/labels
|
||||
<!-- Issue Labels -->
|
||||
[label-story]: https://github.com/OHIF/Viewers/labels/Story%20%3Araised_hands%3A
|
||||
[label-tooling]: https://github.com/OHIF/Viewers/labels/Task%3A%20CI%2FTooling%20%3Arobot%3A
|
||||
[label-docs]: https://github.com/OHIF/Viewers/labels/Task%3A%20Docs%20%3Abook%3A
|
||||
[label-refactor]: https://github.com/OHIF/Viewers/labels/Task%3A%20Refactor%20%3Ahammer_and_wrench%3A
|
||||
[label-tests]: https://github.com/OHIF/Viewers/labels/Task%3A%20Tests%20%3Amicroscope%3A
|
||||
[label-bug]: https://github.com/OHIF/Viewers/labels/Bug%3A%20Verified%20%3Abug%3A
|
||||
<!-- PR Labels -->
|
||||
[draft]: https://github.com/OHIF/Viewers/labels/PR%3A%20Draft
|
||||
[awaiting-response]: https://github.com/OHIF/Viewers/labels/PR%3A%20Awaiting%20Response%20%3Aspeech_balloon%3A
|
||||
[awaiting-review]: https://github.com/OHIF/Viewers/labels/PR%3A%20Awaiting%20Review%20%3Aeyes%3A
|
||||
[awaiting-stories]: https://github.com/OHIF/Viewers/labels/PR%3A%20Awaiting%20UX%20Stories%20%3Adancer%3A
|
||||
[awaiting-revisions]: https://github.com/OHIF/Viewers/labels/PR%3A%20Awaiting%20Revisions%20%3Apen%3A
|
||||
[no-ux-impact]: https://github.com/OHIF/Viewers/labels/PR%3A%20No%20UX%20Impact%20%3Aupside_down_face%3A
|
||||
<!-- -->
|
||||
[ohif-dev]: https://viewer-dev.ohif.org
|
||||
[ohif-stage]: https://viewer-stage.ohif.org
|
||||
[ohif-prod]: https://viewer.ohif.org
|
||||
[gh-board]: https://github.com/OHIF/Viewers/projects/4
|
||||
[label-grabs]: https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3A%22Up+For+Grabs+%3Araising_hand_woman%3A%22
|
||||
[contributing-docs]: ./development/contributing.md
|
||||
<!-- prettier-ignore-end -->
|
||||
44
docs/v2/package.json
Normal file
@ -0,0 +1,44 @@
|
||||
{
|
||||
"name": "ohif-viewer-latest-docs",
|
||||
"version": "2.0.0",
|
||||
"description": "Open Health Imaging Foundation Viewers Metarepo for documentation",
|
||||
"main": ".eslintrc.js",
|
||||
"directories": {
|
||||
"doc": "docs"
|
||||
},
|
||||
"scripts": {
|
||||
"docs": "gitbook install && gitbook serve"
|
||||
},
|
||||
"repository": {
|
||||
"type": "git",
|
||||
"url": "git+https://github.com/OHIF/Viewers.git"
|
||||
},
|
||||
"keywords": [
|
||||
"dicom",
|
||||
"cornerstone",
|
||||
"OHIF",
|
||||
"zero",
|
||||
"footprint",
|
||||
"medical",
|
||||
"imaging",
|
||||
"viewer"
|
||||
],
|
||||
"author": "Open Health Imaging Foundation",
|
||||
"license": "MIT",
|
||||
"bugs": {
|
||||
"url": "https://github.com/OHIF/Viewers/issues"
|
||||
},
|
||||
"homepage": "https://github.com/OHIF/Viewers#readme",
|
||||
"dependencies": {
|
||||
"gitbook-plugin-anchors": "^0.7.1",
|
||||
"gitbook-plugin-edit-link": "^2.0.2",
|
||||
"gitbook-plugin-ga": "^2.0.0",
|
||||
"gitbook-plugin-github": "^3.0.0",
|
||||
"gitbook-plugin-sitemap": "^1.2.0",
|
||||
"gitbook-plugin-theme-cornerstone": "^1.1.4",
|
||||
"gitbook-plugin-versions": "^2.1.4"
|
||||
},
|
||||
"devDependencies": {
|
||||
"gitbook-cli": "^2.3.2"
|
||||
}
|
||||
}
|
||||
28
docs/v2/quick-start.md
Normal file
@ -0,0 +1,28 @@
|
||||
# Quick Start
|
||||
|
||||
This page details how to get an instance of the OHIF Viewer up and running as
|
||||
fast as possible. It shows how to grab a pre-built version of the application,
|
||||
point it at your data source (PACS), and plop it on a web server.
|
||||
|
||||
## Options
|
||||
|
||||
### 1. Pre-built PWA
|
||||
|
||||
...
|
||||
|
||||
### 2. Script-Tag
|
||||
|
||||
...
|
||||
|
||||
### 3. Docker
|
||||
|
||||
...
|
||||
|
||||
## Security Concerns
|
||||
|
||||
- Secure your data
|
||||
|
||||
## Common Issues
|
||||
|
||||
- Missing server rewrite rules
|
||||
- CORS issues when requesting data from PACS
|
||||
65
docs/v2/services/default/index.md
Normal file
@ -0,0 +1,65 @@
|
||||
# Services (default)
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Example](#example)
|
||||
|
||||
## Overview
|
||||
|
||||
Services are a work in progress. As we are still in the progress of creating a
|
||||
non-ui maintained service, this usage may change.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/services.png">
|
||||
<img src="/assets/img/services.png" alt="UI Services Diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Diagram showing relationship between React Context and UI Service</i></div>
|
||||
</div>
|
||||
|
||||
## Example
|
||||
|
||||
The simplest service return a new object that has a `name` property, and
|
||||
methods/properties that give the service its functionality. The "Factory
|
||||
Function" that creates the service is provided with the implementation (this is
|
||||
slightly different for UI Services).
|
||||
|
||||
```js
|
||||
const _speak = () => {
|
||||
console.warn('Speak is not implemented');
|
||||
};
|
||||
|
||||
/**
|
||||
* Factory function to create `HelloWorldService`
|
||||
*
|
||||
* @param {object} implementation
|
||||
* @param {function} implementation.speak - Speak's implementation
|
||||
* @returns HelloWorldService
|
||||
*/
|
||||
export default function createHelloWorldService({ speak }) {
|
||||
return {
|
||||
name: 'HelloWorldService',
|
||||
speak: speak || _speak,
|
||||
};
|
||||
}
|
||||
```
|
||||
|
||||
A service, once created, can be registered with the `ServicesManager` to make it
|
||||
accessible to extensions. Similarly, the application code can access named
|
||||
services from the `ServicesManager`.
|
||||
|
||||
```js
|
||||
// In the application
|
||||
const speak = () => {
|
||||
window.alert('HELLO WORLD');
|
||||
};
|
||||
const HelloWorldService = createHelloWorldService({ speak });
|
||||
const servicesManager = new ServicesManager();
|
||||
|
||||
servicesManager.registerService(HelloWorldService);
|
||||
|
||||
// In an extension
|
||||
const { HelloWorldService } = servicesManager.services;
|
||||
|
||||
if (HelloWorldService) {
|
||||
HelloWorldService.speak();
|
||||
}
|
||||
```
|
||||
15
docs/v2/services/default/measurements.md
Normal file
@ -0,0 +1,15 @@
|
||||
# Service: Measurements
|
||||
|
||||
...
|
||||
|
||||
## Usage
|
||||
|
||||
## How to define a Measurement tool
|
||||
|
||||
## How to validate Measurements
|
||||
|
||||
## Data exchange concepts
|
||||
|
||||
## Longitudinal Measurements
|
||||
|
||||
## Timepoints
|
||||
69
docs/v2/services/index.md
Normal file
@ -0,0 +1,69 @@
|
||||
# Services Overview
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Kinds of Services](#kinds-of-services)
|
||||
- [Services (default)](#services-default)
|
||||
- [UI Services](#ui-services)
|
||||
- [Related Patterns](#related-patterns)
|
||||
|
||||
## Overview
|
||||
|
||||
Services are a beefier version of [commands][commands]. They provide a set of
|
||||
operations, often tied to some shared state, and are made available to
|
||||
extensions via the `ServicesManager`. Services are particularly well suited to
|
||||
address [cross-cutting concerns][cross-cutting-concerns].
|
||||
|
||||
Each service should be:
|
||||
|
||||
- self-contained
|
||||
- able to fail and/or be removed without breaking the application
|
||||
- completely interchangeable with another module implementing the same interface
|
||||
|
||||
## Kinds of Services
|
||||
|
||||
Depending on the kind of service, we follow slightly different conventions. For
|
||||
example, a UI service often receives its implementation from a React Context
|
||||
Provider. You can read more about the different kinds of services and what makes
|
||||
them different below:
|
||||
|
||||
### Services (default)
|
||||
|
||||
Services are a work in progress. As we are still in the progress of creating a
|
||||
non-ui maintained service, this usage may change.
|
||||
|
||||
[You can read more about default services: here](./default/index.md)
|
||||
|
||||
### UI Services
|
||||
|
||||
A typical web application will have components and state for common UI like
|
||||
modals, notifications, dialogs, etc. A UI service makes it possible to leverage
|
||||
these components from an extension.
|
||||
|
||||
We maintain the following UI Services:
|
||||
|
||||
- [UIDialogService](./ui/ui-dialog-service.md)
|
||||
- [UIModalService](./ui/ui-modal-service.md)
|
||||
- [UINotificationService](./ui/ui-notification-service.md)
|
||||
|
||||
You can read more about a specific service by selecting it in the above list,
|
||||
and more about [UI services in general: here](./ui/index.md)
|
||||
|
||||
## Related Patterns
|
||||
|
||||
Services are "concern-specific" code modules that can be consumed across layers.
|
||||
We try to minimize the coupling they introduce by authoring services that are
|
||||
able to fail or be removed. Related patterns that may reduce coupling include:
|
||||
|
||||
- Pub/Sub
|
||||
- Commands
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[commands]: ../extensions/modules/commands.md
|
||||
[core-services]: https://github.com/OHIF/Viewers/tree/master/platform/core/src/services
|
||||
[services-manager]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/services/ServicesManager.js
|
||||
[cross-cutting-concerns]: https://en.wikipedia.org/wiki/Cross-cutting_concern
|
||||
<!-- prettier-ignore-end -->
|
||||
106
docs/v2/services/ui/index.md
Normal file
@ -0,0 +1,106 @@
|
||||
# UI Services
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Example](#example)
|
||||
- [Tips & Tricks](#tips--tricks)
|
||||
- [Maintained Services](#maintained-services)
|
||||
|
||||
## Overview
|
||||
|
||||
A typical web application will have components and state for common UI like
|
||||
modals, notifications, dialogs, etc. A UI service makes it possible to leverage
|
||||
these components from an extension.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/ui-services.png">
|
||||
<img src="/assets/img/ui-services.png" alt="UI Services Diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Diagram showing relationship between React Context and UI Service</i></div>
|
||||
</div>
|
||||
|
||||
In `@ohif/core`, we have a collection of service factories. We select one we
|
||||
would like our application to support, create an instance of it, and pass that
|
||||
instance to our `ServicesManager` AND to a React component (in this example,
|
||||
`ModalContext`'s provider).
|
||||
|
||||
The `ModalContext`'s provider:
|
||||
|
||||
- Exposes context values
|
||||
- Exposes methods that leverage `useCallback` hooks
|
||||
- Sets the service's implementation in a `useEffect` hook
|
||||
|
||||
The `ServicesManager` is:
|
||||
|
||||
- Passed to the `ExtensionManager`
|
||||
- The `ExtensionManager` makes the `ServicesManager` available to:
|
||||
- All of it's lifecycle hooks (`preRegistration`)
|
||||
- Each "getModuleFunction" (`getToolbarModule`, `getPanelModule`, etc.)
|
||||
|
||||
## Example
|
||||
|
||||
That's all fine and good, but it's still a little too abstract. What does this
|
||||
translate to in practice?
|
||||
|
||||
```js
|
||||
// In the application
|
||||
import UINotificationService from '@ohif/core';
|
||||
const servicesManager = new ServicesManager();
|
||||
|
||||
servicesManager.registerService(UINotificationService);
|
||||
|
||||
// UI Service Provider
|
||||
useEffect(() => {
|
||||
if (service) {
|
||||
service.setServiceImplementation({ hide, show });
|
||||
}
|
||||
}, [service, hide, show]);
|
||||
|
||||
// In an extension
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
|
||||
if (UINotificationService) {
|
||||
UINotificationService.show('Hello from the other side 👋');
|
||||
}
|
||||
```
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/notification-example.gif">
|
||||
<img src="/assets/img/notification-example.gif" alt="UI Notification Service Example" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>GIF showing successful call of UINotificationService from an extension.</i></div>
|
||||
</div>
|
||||
|
||||
## Tips & Tricks
|
||||
|
||||
It's important to remember that all we're doing is making it possible to control
|
||||
bits of the application's UI from an extension. Here are a few non-obvious
|
||||
takeaways worth mentioning:
|
||||
|
||||
- Your application code should continue to use React context
|
||||
(consumers/providers) as it normally would
|
||||
- You can substitute our "out of the box" UI implementations with your own
|
||||
- You can create and register your own UI services
|
||||
- You can choose not to register a service or provide a service implementation
|
||||
- In extensions, you can provide fallback/alternative behavior if an expected
|
||||
service is not registered
|
||||
- No `UIModalService`? Use the `UINotificationService` to notify users.
|
||||
- While we don't have an examples of this, you can technically register a
|
||||
service in an extension and expose it to the core application
|
||||
|
||||
> Note: These are recommended patterns, not hard and fast rules. Following them
|
||||
> will help reduce confusion and interoperability with the larger OHIF
|
||||
> community, but they're not silver bullets. Please speak up, create an issue,
|
||||
> if you would like to discuss new services or improvements to this pattern.
|
||||
|
||||
## Maintained Services
|
||||
|
||||
Our `@ohif/viewer` project is an example of how to glue together the different
|
||||
parts and pieces of the OHIF Platform to create a polished and powerful product.
|
||||
To accomplish that, we maintain several UI Services that you can use in your own
|
||||
project, or provide alternative implementations for:
|
||||
|
||||
| Name | Docs |
|
||||
| --------------------- | ------------------------------------ |
|
||||
| UIDialogService | [Here](./ui-dialog-service.md) |
|
||||
| UIModalService | [Here](./ui-modal-service.md) |
|
||||
| UINotificationService | [Here](./ui-notification-service.md) |
|
||||
49
docs/v2/services/ui/ui-dialog-service.md
Normal file
@ -0,0 +1,49 @@
|
||||
# UI Dialog Service
|
||||
|
||||
Dialogs have similar characteristics to that of Modals, but often with a
|
||||
streamlined focus. They can be helpful when:
|
||||
|
||||
- We need to grab the user's attention
|
||||
- We need user input
|
||||
- We need to show additional information
|
||||
|
||||
If you're curious about the DOs and DON'Ts of dialogs and modals, check out this
|
||||
article: ["Best Practices for Modals / Overlays / Dialog Windows"][ux-article]
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/dialog-example.gif">
|
||||
<img src="/assets/img/dialog-example.gif" alt="UI Dialog Service Example" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>GIF showing successful call of UIDialogService from an extension.</i></div>
|
||||
</div>
|
||||
|
||||
## Interface
|
||||
|
||||
For a more detailed look on the options and return values each of these methods
|
||||
is expected to support, [check out it's interface in `@ohif/core`][interface]
|
||||
|
||||
| API Member | Description |
|
||||
| -------------- | ------------------------------------------------------ |
|
||||
| `create()` | Creates a new Dialog that is displayed until dismissed |
|
||||
| `dismiss()` | Dismisses the specified dialog |
|
||||
| `dismissAll()` | Dismisses all dialogs |
|
||||
|
||||
## Implementations
|
||||
|
||||
| Implementation | Consumer |
|
||||
| ------------------------------------ | -------------------------- |
|
||||
| [Dialog Provider][dialog-provider]\* | Baked into Dialog Provider |
|
||||
|
||||
`*` - Denotes maintained by OHIF
|
||||
|
||||
> 3rd Party implementers may be added to this table via pull requests.
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[interface]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/services/UIDialogService/index.js
|
||||
[dialog-provider]: https://github.com/OHIF/Viewers/blob/master/platform/ui/src/contextProviders/DialogProvider.js
|
||||
[ux-article]: https://uxplanet.org/best-practices-for-modals-overlays-dialog-windows-c00c66cddd8c
|
||||
<!-- prettier-ignore-end -->
|
||||
50
docs/v2/services/ui/ui-modal-service.md
Normal file
@ -0,0 +1,50 @@
|
||||
# UI Modal Service
|
||||
|
||||
Modals have similar characteristics to that of Dialogs, but are often larger,
|
||||
and only allow for a single instance to be viewable at once. They also tend to
|
||||
be centered, and not draggable. They're commonly used when:
|
||||
|
||||
- We need to grab the user's attention
|
||||
- We need user input
|
||||
- We need to show additional information
|
||||
|
||||
If you're curious about the DOs and DON'Ts of dialogs and modals, check out this
|
||||
article: ["Best Practices for Modals / Overlays / Dialog Windows"][ux-article]
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/modal-example.gif">
|
||||
<img src="/assets/img/modal-example.gif" alt="UI Modal Service Example" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>GIF showing successful call of UIModalService from an extension.</i></div>
|
||||
</div>
|
||||
|
||||
## Interface
|
||||
|
||||
For a more detailed look on the options and return values each of these methods
|
||||
is expected to support, [check out it's interface in `@ohif/core`][interface]
|
||||
|
||||
| API Member | Description |
|
||||
| ---------- | ------------------------------------- |
|
||||
| `hide()` | Hides the open modal |
|
||||
| `show()` | Shows the provided content in a modal |
|
||||
|
||||
## Implementations
|
||||
|
||||
| Implementation | Consumer |
|
||||
| ---------------------------------- | ----------------------------- |
|
||||
| [Modal Provider][modal-provider]\* | [OHIFModal][modal-consumer]\* |
|
||||
|
||||
`*` - Denotes maintained by OHIF
|
||||
|
||||
> 3rd Party implementers may be added to this table via pull requests.
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[interface]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/services/UIModalService/index.js
|
||||
[modal-provider]: https://github.com/OHIF/Viewers/blob/master/platform/ui/src/contextProviders/ModalProvider.js
|
||||
[modal-consumer]: https://github.com/OHIF/Viewers/tree/master/platform/ui/src/components/ohifModal
|
||||
[ux-article]: https://uxplanet.org/best-practices-for-modals-overlays-dialog-windows-c00c66cddd8c
|
||||
<!-- prettier-ignore-end -->
|
||||
51
docs/v2/services/ui/ui-notification-service.md
Normal file
@ -0,0 +1,51 @@
|
||||
# UI Notification Service
|
||||
|
||||
Notifications can be annoying and disruptive. They can also deliver timely
|
||||
helpful information, or expedite the user's workflow. Here is some high level
|
||||
guidance on when and how to use them:
|
||||
|
||||
- Notifications should be non-interfering (timely, relevant, important)
|
||||
- We should only show small/brief notifications
|
||||
- Notifications should be contextual to current behavior/actions
|
||||
- Notifications can serve warnings (acting as a confirmation)
|
||||
|
||||
If you're curious about the DOs and DON'Ts of notifications, check out this
|
||||
article: ["How To Design Notifications For Better UX"][ux-article]
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/notification-example.gif">
|
||||
<img src="/assets/img/notification-example.gif" alt="UI Notification Service Example" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>GIF showing successful call of UINotificationService from an extension.</i></div>
|
||||
</div>
|
||||
|
||||
## Interface
|
||||
|
||||
For a more detailed look on the options and return values each of these methods
|
||||
is expected to support, [check out it's interface in `@ohif/core`][interface]
|
||||
|
||||
| API Member | Description |
|
||||
| ---------- | --------------------------------------- |
|
||||
| `hide()` | Hides the specified notification |
|
||||
| `show()` | Creates and displays a new notification |
|
||||
|
||||
## Implementations
|
||||
|
||||
| Implementation | Consumer |
|
||||
| ---------------------------------------- | ----------------------------------------- |
|
||||
| [Snackbar Provider][snackbar-provider]\* | [SnackbarContainer][snackbar-container]\* |
|
||||
|
||||
`*` - Denotes maintained by OHIF
|
||||
|
||||
> 3rd Party implementers may be added to this table via pull requests.
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[interface]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/services/UINotificationService/index.js
|
||||
[snackbar-provider]: https://github.com/OHIF/Viewers/blob/master/platform/ui/src/contextProviders/SnackbarProvider.js
|
||||
[snackbar-container]: https://github.com/OHIF/Viewers/blob/master/platform/ui/src/components/snackbar/SnackbarContainer.js
|
||||
[ux-article]: https://uxplanet.org/how-to-design-notifications-for-better-ux-6fb0711be54d
|
||||
<!-- prettier-ignore-end -->
|
||||
119
docs/v2/viewer/configuration.md
Normal file
@ -0,0 +1,119 @@
|
||||
# Viewer: Configuration
|
||||
|
||||
We maintain a number of common viewer application configurations at
|
||||
[`<root>/platform/viewer/public/configs`][config-dir]. How these values are
|
||||
passed to the viewer depend on how it's deployed, but the two most common paths
|
||||
are:
|
||||
|
||||
- `index.html` looks for `https://your-website.com/app-config.js` OR
|
||||
- `index.html` passes the values to `OHIF.installViewer()`
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
/**
|
||||
* "White Labeling" is used to change the branding, look, and feel of the OHIF
|
||||
* Viewer. These settings, and the color variables that are used by our components,
|
||||
* are the easiest way to rebrand the application.
|
||||
*
|
||||
* More extensive changes are made possible through swapping out the UI library,
|
||||
* Viewer project, or extensions.
|
||||
*/
|
||||
whiteLabeling: {
|
||||
/* Optional: Should return a React component to be rendered in the "Logo" section of the application's Top Navigation bar */
|
||||
createLogoComponentFn: function(React) {
|
||||
return React.createElement('a', {
|
||||
target: '_self',
|
||||
rel: 'noopener noreferrer',
|
||||
className: 'header-brand',
|
||||
href: '/',
|
||||
style: {
|
||||
display: 'block',
|
||||
textIndent: '-9999px',
|
||||
background: 'url(/svg-file-hosted-at-domain-root.svg)',
|
||||
backgroundSize: 'contain',
|
||||
backgroundRepeat: 'no-repeat',
|
||||
width: '200px',
|
||||
},
|
||||
});
|
||||
},
|
||||
},
|
||||
/**
|
||||
* Internally, the OHIF Viewer fetches data primarily with the
|
||||
* `cornerstoneWADOImageLoader` and the `DICOMWebClient`. If either of these
|
||||
* receive a non-200 response, this method allows you to handle that error.
|
||||
*
|
||||
* Common use cases include:
|
||||
* - Showing a notification with the UINotificationService
|
||||
* - Redirecting the user
|
||||
* - Refreshing an auth token
|
||||
*
|
||||
* @param {Object} error - JS new Error()
|
||||
* @param {XMLHttpRequest} error.request - The XHR request that's onreadystate change triggered this callback
|
||||
* @param {string} error.response - The XHR's response property
|
||||
* @param {number} error.status - The XHR's status property
|
||||
*/
|
||||
httpErrorHandler: error => {
|
||||
const { request: xhr, response, status } = err;
|
||||
const { responseType, statusText } = xhr;
|
||||
|
||||
// In local files, status is 0 upon success in Firefox
|
||||
if (xhr.readyState === XMLHttpRequest.DONE) {
|
||||
console.log(statusText, response, responseType);
|
||||
} else {
|
||||
console.warn('Likely CORS error');
|
||||
}
|
||||
},
|
||||
extensions: [],
|
||||
showStudyList: true,
|
||||
filterQueryParam: false,
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
enableStudyLazyLoad: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
// Supported Keys: https://craig.is/killing/mice
|
||||
hotkeys: [
|
||||
{ commandName: 'rotateViewportCW', label: 'Rotate Right', keys: ['r'] },
|
||||
{ commandName: 'rotateViewportCCW', label: 'Rotate Left', keys: ['l'] },
|
||||
{ commandName: 'invertViewport', label: 'Invert', keys: ['i'] },
|
||||
{
|
||||
commandName: 'flipViewportVertical',
|
||||
label: 'Flip Horizontally',
|
||||
keys: ['h'],
|
||||
},
|
||||
{
|
||||
commandName: 'flipViewportHorizontal',
|
||||
label: 'Flip Vertically',
|
||||
keys: ['v'],
|
||||
},
|
||||
],
|
||||
/* Configuration passed to the bundled cornerstone extension
|
||||
*
|
||||
* The cornerstone extension is currently tightly coupled to the platform.
|
||||
* Until we're able to decouple it, this key will serve as a workaround to
|
||||
* pass it configuration.
|
||||
*/
|
||||
cornerstoneExtensionConfig: {
|
||||
/* Whether to show/hide annotation "handles" */
|
||||
hideHandles: true,
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[config-dir]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
|
||||
<!-- prettier-ignore-end -->
|
||||
23
docs/v2/viewer/environment-variables.md
Normal file
@ -0,0 +1,23 @@
|
||||
# Environment Variables
|
||||
|
||||
There are a number of environment variables we use at build time to influence the output application's behavior.
|
||||
|
||||
```bash
|
||||
# Application
|
||||
NODE_ENV=< production | development >
|
||||
DEBUG=< true | false >
|
||||
APP_CONFIG=< relative path to application configuration file >
|
||||
PUBLIC_URL=<>
|
||||
VERSION_NUMBER=<Set by CircleCI>
|
||||
BUILD_NUM=<Set by CircleCI>
|
||||
# i18n
|
||||
USE_LOCIZE=<false>
|
||||
LOCIZE_PROJECTID=<ProjectID to pull translations for>
|
||||
LOCIZE_API_KEY=<To enable Locize live editing of translations>
|
||||
```
|
||||
|
||||
## Setting Environment Variables
|
||||
|
||||
- `npx cross-env`
|
||||
- `.env` files
|
||||
- env variables on build machine, or for terminal session
|
||||
3
docs/v2/viewer/hotkeys.md
Normal file
@ -0,0 +1,3 @@
|
||||
# Hotkeys
|
||||
|
||||
...
|
||||
9
docs/v2/viewer/index.md
Normal file
@ -0,0 +1,9 @@
|
||||
# Viewer
|
||||
|
||||
The OHIF Viewing Platform strives to be highly configurable and extensible. This
|
||||
makes it easier for our community members to keep their "secret sauce" private,
|
||||
and incentivises contributions back to the platform. The `@ohif/viewer` project
|
||||
of the platform is the lynchpin that combines everything to create our
|
||||
application.
|
||||
|
||||
- When configuration and themeing aren't enough
|
||||
317
docs/v2/viewer/internationalization.md
Normal file
@ -0,0 +1,317 @@
|
||||
# Viewer: Internationalization
|
||||
|
||||
OHIF supports internationalization using [i18next](https://www.i18next.com/)
|
||||
through the npm package [@ohif/i18n](https://www.npmjs.com/package/@ohif/i18n),
|
||||
where is the main instance of i18n containing several languages and tools.
|
||||
|
||||
<div class='row'>
|
||||
<div class='column'>
|
||||
<p>Our translation management is powered by <a href="https://locize.com/" target="_blank" rel="noopener noreferrer">Locize</a> through their generous support of open source.</p>
|
||||
</div>
|
||||
<div class='column'>
|
||||
<a href="https://locize.com/" target="_blank" rel="noopener noreferrer" style='padding: 20px'>
|
||||
<img src="../assets/img/locizeSponsor.svg" alt="Locize Translation Management Logo">
|
||||
</a>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
## Installing
|
||||
|
||||
```bash
|
||||
yarn add @ohif/i18n
|
||||
|
||||
# OR
|
||||
|
||||
npm install --save @ohif/i18n
|
||||
```
|
||||
|
||||
## How it works
|
||||
|
||||
After installing `@ohif/i18n` npm package, the translation function
|
||||
[t](https://www.i18next.com/overview/api#t) can be used [with](#with-react) or
|
||||
[without](#without-react) React.
|
||||
|
||||
A translation will occur every time a text match happens in a
|
||||
[t](https://www.i18next.com/overview/api#t) function.
|
||||
|
||||
The [t](https://www.i18next.com/overview/api#t) function is responsible for
|
||||
getting translations using all the power of i18next.
|
||||
|
||||
E.g.
|
||||
|
||||
Before:
|
||||
|
||||
```html
|
||||
<div>my translated text</div>
|
||||
```
|
||||
|
||||
After:
|
||||
|
||||
```html
|
||||
<div>{t('my translated text')}</div>
|
||||
```
|
||||
|
||||
If the translation.json file contains a key that matches the HTML content e.g.
|
||||
`my translated text`, it will be replaced automatically by the
|
||||
[t](https://www.i18next.com/overview/api#t) function.
|
||||
|
||||
---
|
||||
|
||||
### With React
|
||||
|
||||
This section will introduce you to [react-i18next](https://react.i18next.com/)
|
||||
basics and show how to implement the [t](https://www.i18next.com/overview/api#t)
|
||||
function easily.
|
||||
|
||||
#### Using HOCs
|
||||
|
||||
In most cases we used
|
||||
[High Order Components](https://react.i18next.com/latest/withtranslation-hoc) to
|
||||
share the `t` function among OHIF's components.
|
||||
|
||||
E.g.
|
||||
|
||||
```js
|
||||
import React from 'react';
|
||||
import { withTranslation } from '@ohif/i18n';
|
||||
|
||||
function MyComponent({ t, i18n }) {
|
||||
return <p>{t('my translated text')}</p>;
|
||||
}
|
||||
|
||||
export default withTranslation('MyNameSpace')(MyComponent);
|
||||
```
|
||||
|
||||
> Important: if you are using React outside the OHIF Viewer, check the
|
||||
> [I18nextProvider](#using-outside-of-ohif-viewer) section, `withTranslation`
|
||||
> HOC doesnt works without a I18nextProvider
|
||||
|
||||
#### Using Hooks
|
||||
|
||||
Also, it's possible to get the `t` tool using
|
||||
[React Hooks](https://react.i18next.com/latest/usetranslation-hook), but it
|
||||
requires at least React > 16.8 😉
|
||||
|
||||
### Using outside of OHIF viewer
|
||||
|
||||
OHIF Viewer already sets a main
|
||||
[I18nextProvider](https://react.i18next.com/latest/i18nextprovider) connected to
|
||||
the shared i18n instance from `@ohif/i18n`, all extensions inside OHIF Viewer
|
||||
will share this same provider at the end, you don't need to set new providers at
|
||||
all.
|
||||
|
||||
But, if you need to use it completely outside of OHIF viewer, you can set the
|
||||
I18nextProvider this way:
|
||||
|
||||
```js
|
||||
import i18n from '@ohif/i18n';
|
||||
import { I18nextProvider } from 'react-i18next';
|
||||
import App from './App';
|
||||
|
||||
<I18nextProvider i18n={i18n}>
|
||||
<App />
|
||||
</I18nextProvider>;
|
||||
```
|
||||
|
||||
After setting `I18nextProvider` in your React App, all translations from
|
||||
`@ohif/i18n` should be available following the basic [With React](#with-react)
|
||||
usage.
|
||||
|
||||
---
|
||||
|
||||
### Without React
|
||||
|
||||
When needed, you can also use available translations _without React_.
|
||||
|
||||
E.g.
|
||||
|
||||
```js
|
||||
import { T } from '@ohif/i18n';
|
||||
console.log(T('my translated text'));
|
||||
console.log(T('$t(Common:Play) my translated text'));
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
# Main Concepts While Translating
|
||||
|
||||
## Namespaces
|
||||
|
||||
Namespaces are being used to organize translations in smaller portions, combined
|
||||
semantically or by use. Each `.json` file inside `@ohif/i18n` npm package
|
||||
becomes a new namespace automatically.
|
||||
|
||||
- Buttons: All buttons translations
|
||||
- CineDialog: Translations for the toll tips inside the Cine Player Dialog
|
||||
- Common: all common jargons that can be reused like `t('$t(common:image)')`
|
||||
- Header: translations related to OHIF's Header Top Bar
|
||||
- MeasurementTable - Translations for the `@ohif/ui` Measurement Table
|
||||
- UserPreferencesModal - Translations for the `@ohif/ui` Preferences Modal
|
||||
|
||||
### How to use another NameSpace inside the current NameSpace?
|
||||
|
||||
i18next provides a parsing feature able to get translations strings from any
|
||||
NameSpace, like this following example getting data from `Common` NameSpace:
|
||||
|
||||
```
|
||||
$t(Common:Reset)
|
||||
```
|
||||
|
||||
## Extending Languages in @ohif/i18n
|
||||
|
||||
Sometimes, even using the same language, some nouns or jargons can change
|
||||
according to the country, states or even from Hospital to Hospital.
|
||||
|
||||
In this cases, you don't need to set an entire language again, you can extend
|
||||
languages creating a new folder inside a pre existent language folder and
|
||||
@ohif/i18n will do the hard work.
|
||||
|
||||
This new folder must to be called with a double character name, like the `UK` in
|
||||
the following file tree:
|
||||
|
||||
```bash
|
||||
|-- src
|
||||
|-- locales
|
||||
index.js
|
||||
|-- en
|
||||
|-- Buttons.json
|
||||
index.js
|
||||
| UK
|
||||
|-- Buttons.js
|
||||
indes.js
|
||||
| US
|
||||
|-- Buttons.js
|
||||
index.js
|
||||
...
|
||||
```
|
||||
|
||||
All properties inside a Namespace will be merged in the new sub language, e.g
|
||||
`en-US` and `en-UK` will merge the props with `en`, using i18next's fallback
|
||||
languages tool.
|
||||
|
||||
You will need to export all Json files in your `index.js` file, mounting an
|
||||
object like this:
|
||||
|
||||
```js
|
||||
{
|
||||
en: {
|
||||
NameSpace: {
|
||||
keyWord1: 'keyWord1Translation',
|
||||
keyWord2: 'keyWord2Translation',
|
||||
keyWord3: 'keyWord3Translation',
|
||||
}
|
||||
},
|
||||
'en-UK': {
|
||||
NameSpace: {
|
||||
keyWord1: 'keyWord1DifferentTranslation',
|
||||
}
|
||||
}
|
||||
}
|
||||
```
|
||||
|
||||
Please check the `index.js` files inside locales folder for an example of this
|
||||
exporting structure.
|
||||
|
||||
### Extending languages dynamically
|
||||
|
||||
You have access to the i18next instance, so you can use the
|
||||
[addResourceBundle](https://www.i18next.com/how-to/add-or-load-translations#add-after-init)
|
||||
method to add and change language resources as needed.
|
||||
|
||||
E.g.
|
||||
|
||||
```js
|
||||
import { i18n } from '@ohif/i18n';
|
||||
i18next.addResourceBundle('pt-BR', 'Buttons', {
|
||||
Angle: 'Ângulo',
|
||||
});
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
### How to set a whole new language
|
||||
|
||||
To set a brand new language you can do it in two different ways:
|
||||
|
||||
- Opening a pull request for `@ohif/i18n` and sharing the translation with the
|
||||
community. 😍 Please see [Contributing](#contributing-with-new-languages)
|
||||
section for further information.
|
||||
|
||||
- Setting it only in your project or extension:
|
||||
|
||||
You'll need a a final object like the following, what is setting French as
|
||||
language, and send it to `addLocales` method.
|
||||
|
||||
```js
|
||||
const newLanguage =
|
||||
{
|
||||
fr: {
|
||||
Commons: {
|
||||
"Reset": "Réinitialiser",
|
||||
"Previous": "Précédent",
|
||||
},
|
||||
Buttons: {
|
||||
"Rectangle": "Rectangle",
|
||||
"Circle": "Cercle",
|
||||
}
|
||||
}
|
||||
```
|
||||
|
||||
To make it easier to translate, you can copy the .json files in the /locales
|
||||
folder and theirs index.js exporters, keeping same keys and NameSpaces.
|
||||
Importing the main index.js file, will provide you an Object as expected by the
|
||||
method `addlocales`;
|
||||
|
||||
E.g. of `addLocales` usage
|
||||
|
||||
```js
|
||||
import { addLocales } from '@ohif/i18n';
|
||||
import locales from './locales/index.js';
|
||||
addLocales(locales);
|
||||
```
|
||||
|
||||
You can also set them manually, one by one, using this
|
||||
[method](#extending-languages-dynamically).
|
||||
|
||||
---
|
||||
|
||||
## Language Detections
|
||||
|
||||
@ohif/i18n uses
|
||||
[i18next-browser-languageDetector](https://github.com/i18next/i18next-browser-languageDetector)
|
||||
to manage detections, also exports a method called initI18n that accepts a new
|
||||
detector config as parameter.
|
||||
|
||||
### Changing the language
|
||||
|
||||
OHIF Viewer accepts a query param called `lng` in the url to change the
|
||||
language.
|
||||
|
||||
E.g.
|
||||
|
||||
```
|
||||
https://docs.ohif.org/demo/?lng=es-MX
|
||||
```
|
||||
|
||||
### Language Persistence
|
||||
|
||||
The user's language preference is kept automatically by the detector and stored
|
||||
at a cookie called 'i18next', and in a localstorage key called 'i18nextLng'.
|
||||
These names can be changed with a new
|
||||
[Detector Config](https://github.com/i18next/i18next-browser-languageDetector).
|
||||
|
||||
## Debugging translations
|
||||
|
||||
There is an environment variable responsible for debugging the translations,
|
||||
called `REACT_APP_I18N_DEBUG`.
|
||||
|
||||
Run the project as following to get full debug information:
|
||||
|
||||
```bash
|
||||
REACT_APP_I18N_DEBUG=true yarn run dev
|
||||
```
|
||||
|
||||
### Contributing with new languages
|
||||
|
||||
Contributions of any kind are welcome! Please check the
|
||||
[instructions](../development/contributing.md).
|
||||
97
docs/v2/viewer/themeing.md
Normal file
@ -0,0 +1,97 @@
|
||||
# Viewer: Themeing
|
||||
|
||||
Themeing is currently accomplished with color variables that are defined within
|
||||
the [`:root`](https://css-tricks.com/almanac/selectors/r/root/) selector
|
||||
(allowing them to cascade across all elements). This repository's components,
|
||||
and the ones we consume from our
|
||||
[`@ohif/ui` component library](https://react.ohif.org/styling-and-theming)
|
||||
utilize them. We are interested in pursuing more robust themeing options, and
|
||||
open to pull requests and discussion issues.
|
||||
|
||||
```css
|
||||
:root {
|
||||
/* Interface UI Colors */
|
||||
--default-color: #9ccef9;
|
||||
--hover-color: #ffffff;
|
||||
--active-color: #20a5d6;
|
||||
--ui-border-color: #44626f;
|
||||
--ui-border-color-dark: #3c5d80;
|
||||
--ui-border-color-active: #00a4d9;
|
||||
--primary-background-color: #000000;
|
||||
--box-background-color: #3e5975;
|
||||
|
||||
--text-primary-color: #ffffff;
|
||||
--text-secondary-color: #91b9cd;
|
||||
--input-background-color: #2c363f;
|
||||
--input-placeholder-color: #d3d3d3;
|
||||
|
||||
--table-hover-color: #2c363f;
|
||||
--table-text-primary-color: #ffffff;
|
||||
--table-text-secondary-color: #91b9cd;
|
||||
|
||||
--large-numbers-color: #6fbde2;
|
||||
|
||||
--state-error: #ffcccc;
|
||||
--state-error-border: #ffcccc;
|
||||
--state-error-text: #ffcccc;
|
||||
|
||||
/* Common palette */
|
||||
--ui-yellow: #e29e4a;
|
||||
--ui-sky-blue: #6fbde2;
|
||||
|
||||
/* State palette */
|
||||
--ui-state-error: #ffcccc;
|
||||
--ui-state-error-border: #993333;
|
||||
--ui-state-error-text: #661111;
|
||||
--ui-gray-lighter: #436270;
|
||||
--ui-gray-light: #516873;
|
||||
--ui-gray: #263340;
|
||||
--ui-gray-dark: #16202b;
|
||||
--ui-gray-darker: #151a1f;
|
||||
--ui-gray-darkest: #14202a;
|
||||
|
||||
--calendar-day-color: #d3d3d3;
|
||||
--calendar-day-border-color: #d3d3d3;
|
||||
--calendar-day-active-hover-background-color: #516873;
|
||||
--calendar-main-color: #263340;
|
||||
--viewport-border-thickness: 1px;
|
||||
}
|
||||
```
|
||||
|
||||
## White Labeling
|
||||
|
||||
> A white-label product is a product or service produced by one company (the
|
||||
> producer) that other companies (the marketers) rebrand to make it appear as if
|
||||
> they had made it - [Wikipedia: White-Label Product][wikipedia]
|
||||
|
||||
Current white-labeling options are limited. We expose the ability to replace the
|
||||
"Logo" section of the application with a custom "Logo" component. You can do
|
||||
this by adding a `whiteLabeling` key to your
|
||||
[configuration file](./configuration.md).
|
||||
|
||||
```js
|
||||
function RadicalImagingLogo(React) {
|
||||
return React.createElement(
|
||||
'a',
|
||||
{
|
||||
target: '_blank',
|
||||
rel: 'noopener noreferrer',
|
||||
className: 'header-brand',
|
||||
href: 'http://radicalimaging.com',
|
||||
},
|
||||
React.createElement('h5', {}, 'RADICAL IMAGING')
|
||||
);
|
||||
}
|
||||
|
||||
props.whiteLabeling = {
|
||||
createLogoComponentFn: RadicalImagingLogo,
|
||||
};
|
||||
```
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[wikipedia]: https://en.wikipedia.org/wiki/White-label_product
|
||||
<!-- prettier-ignore-end -->
|
||||