feat: new Total Metabolic Tumor Volume tmtv (#2866)
* fix: ptDisplaySet metadata problem * fix: typo in xhrHeader field * fix: temporary fix for crosshairs on reload data * fix hotkey bug for input fields * upgrade docusarusu to stable release * circle ci node upgrade * cypress node upgrade * bump node in netlify * bump node version * remove versioned docs * update resources * fix: webpack injection of plugins * fix meaningful label for panels * add reviews and fix cli for creation * copy over chunks if exists in the build * edit templates * edit templates * fix yarn lock * fix(plugin):Deploy on windows is broken Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
This commit is contained in:
parent
ae897c47e0
commit
10b4ed5f8c
@ -18,17 +18,17 @@ executors:
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# Custom executor to override Cypress config
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deploy-to-prod-executor:
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docker:
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- image: cimg/node:14.18
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- image: cimg/node:16.14
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environment:
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CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
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chrome-and-pacs:
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docker:
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# Primary container image where all steps run.
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- image: 'cypress/browsers:node14.17.0-chrome88-ff89'
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- image: 'cypress/browsers:node16.14.2-slim-chrome103-ff102'
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defaults: &defaults
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docker:
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- image: cimg/node:14.18-browsers
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- image: cimg/node:16.14-browsers
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environment:
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TERM: xterm # Enable colors in term
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QUICK_BUILD: true
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@ -181,7 +181,7 @@ jobs:
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DEPLOY_TO_DEV:
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docker:
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- image: circleci/node:14.17.0
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- image: circleci/node:16.14.0
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environment:
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TERM: xterm
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NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
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@ -196,7 +196,7 @@ jobs:
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DEPLOY_TO_STAGING:
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docker:
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- image: circleci/node:14.17.0
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- image: circleci/node:16.14.0
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environment:
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TERM: xterm
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NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
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@ -211,7 +211,7 @@ jobs:
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DEPLOY_TO_PRODUCTION:
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docker:
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- image: circleci/node:14.17.0
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- image: circleci/node:16.14.0
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environment:
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TERM: xterm
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NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
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@ -1 +1 @@
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14.18.0
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16.14.0
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@ -4,5 +4,6 @@
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"proseWrap": "always",
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"tabWidth": 2,
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"semi": true,
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"singleQuote": true
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"singleQuote": true,
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"arrowParens": "avoid"
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}
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@ -45,7 +45,7 @@
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"dependencies": {
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"@babel/runtime": "7.16.3",
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"classnames": "^2.2.6",
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"@cornerstonejs/core": "^0.13.11",
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"@cornerstonejs/tools": "^0.20.15"
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"@cornerstonejs/core": "^0.14.4",
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"@cornerstonejs/tools": "^0.21.7"
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}
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}
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@ -29,7 +29,7 @@
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"peerDependencies": {
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"@ohif/core": "^3.0.0",
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"@ohif/ui": "^2.0.0",
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"cornerstone-wado-image-loader": "^4.2.0",
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"cornerstone-wado-image-loader": "^4.2.1",
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"dcmjs": "^0.24.5",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -43,9 +43,9 @@
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},
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"dependencies": {
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"@babel/runtime": "7.17.9",
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"@cornerstonejs/core": "^0.13.11",
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"@cornerstonejs/streaming-image-volume-loader": "^0.4.10",
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"@cornerstonejs/tools": "^0.20.15",
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"@cornerstonejs/core": "^0.14.4",
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"@cornerstonejs/streaming-image-volume-loader": "^0.4.16",
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"@cornerstonejs/tools": "^0.21.7",
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"@kitware/vtk.js": "^24.18.7",
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"dom-to-image": "^2.6.0",
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"lodash.debounce": "4.0.8",
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@ -195,9 +195,11 @@ const OHIFCornerstoneViewport = React.memo(props => {
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DisplaySetService
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);
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const keepCamera = true;
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CornerstoneViewportService.updateViewport(
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viewportIndex,
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newViewportData
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newViewportData,
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keepCamera
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);
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setViewportData(newViewportData);
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@ -41,7 +41,7 @@ function CornerstoneOverlays(props) {
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viewportIndex
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);
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if (viewportInfo?.viewportOptions?.customViewportOptions?.hideOverlays) {
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if (viewportInfo?.viewportOptions?.customViewportProps?.hideOverlays) {
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return null;
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}
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}
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@ -115,19 +115,18 @@ const commandsModule = ({ servicesManager }) => {
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const renderingEngine = CornerstoneViewportService.getRenderingEngine();
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const viewport = renderingEngine.getViewport(viewportId);
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const lower = windowCenterNum - windowWidthNum / 2.0;
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const upper = windowCenterNum + windowWidthNum / 2.0;
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const { lower, upper } = csUtils.windowLevel.toLowHighRange(
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windowWidthNum,
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windowCenterNum
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);
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if (viewport instanceof StackViewport) {
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viewport.setProperties({
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voiRange: {
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upper,
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lower,
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},
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});
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viewport.render();
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}
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viewport.setProperties({
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voiRange: {
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upper,
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lower,
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},
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});
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viewport.render();
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},
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toggleCrosshairs({ toolGroupId, toggledState }) {
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const toolName = 'Crosshairs';
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@ -166,14 +166,12 @@ class CornerstoneViewportService implements IViewportService {
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const viewportInfo = this.viewportsInfo.get(viewportIndex);
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viewportInfo.setRenderingEngineId(renderingEngine.id);
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const {
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viewportOptions,
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displaySetOptions,
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} = this._getViewportAndDisplaySetOptions(
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publicViewportOptions,
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publicDisplaySetOptions,
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viewportInfo
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);
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const { viewportOptions, displaySetOptions } =
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this._getViewportAndDisplaySetOptions(
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publicViewportOptions,
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publicDisplaySetOptions,
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viewportInfo
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);
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viewportInfo.setViewportOptions(viewportOptions);
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viewportInfo.setDisplaySetOptions(displaySetOptions);
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@ -400,48 +398,57 @@ class CornerstoneViewportService implements IViewportService {
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volume.load();
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});
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this.setVolumesForViewport(viewport, volumeInputArray);
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// This returns the async continuation only
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return this.setVolumesForViewport(viewport, volumeInputArray);
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}
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public setVolumesForViewport(viewport, volumeInputArray) {
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viewport.setVolumes(volumeInputArray).then(() => {
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const viewportInfo = this.getViewportInfo(viewport.id);
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const initialImageOptions = viewportInfo.getInitialImageOptions();
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public async setVolumesForViewport(viewport, volumeInputArray) {
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await viewport.setVolumes(volumeInputArray);
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if (
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initialImageOptions &&
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(initialImageOptions.preset !== undefined ||
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initialImageOptions.index !== undefined)
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) {
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const { index, preset } = initialImageOptions;
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const viewportInfo = this.getViewportInfo(viewport.id);
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const initialImageOptions = viewportInfo.getInitialImageOptions();
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const { numberOfSlices } = csUtils.getImageSliceDataForVolumeViewport(
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viewport
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);
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if (
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initialImageOptions &&
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(initialImageOptions.preset !== undefined ||
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initialImageOptions.index !== undefined)
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) {
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const { index, preset } = initialImageOptions;
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const imageIndex = this._getInitialImageIndex(
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numberOfSlices,
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index,
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preset
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);
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const { numberOfSlices } =
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csUtils.getImageSliceDataForVolumeViewport(viewport);
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csToolsUtils.jumpToSlice(viewport.element, {
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imageIndex,
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});
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}
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const imageIndex = this._getInitialImageIndex(
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numberOfSlices,
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index,
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preset
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);
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viewport.render();
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});
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csToolsUtils.jumpToSlice(viewport.element, {
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imageIndex,
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});
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}
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viewport.render();
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}
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public updateViewport(viewportIndex, viewportData) {
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// Todo: keepCamera is an interim solution until we have a better solution for
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// keeping the camera position when the viewport data is changed
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public updateViewport(viewportIndex, viewportData, keepCamera = false) {
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const viewportInfo = this.getViewportInfoByIndex(viewportIndex);
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const viewportId = viewportInfo.getViewportId();
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const viewport = this.getCornerstoneViewport(viewportId);
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const viewportCamera = viewport.getCamera();
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if (viewport instanceof VolumeViewport) {
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this._setVolumeViewport(viewport, viewportData, viewportInfo);
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this._setVolumeViewport(viewport, viewportData, viewportInfo).then(() => {
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if (keepCamera) {
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viewport.setCamera(viewportCamera);
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viewport.render();
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}
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});
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return;
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}
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@ -19,7 +19,7 @@ export type ViewportOptions = {
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initialView?: string;
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syncGroups?: SyncGroup[];
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initialImageOptions?: InitialImageOptions;
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customViewportOptions?: Record<string, unknown>;
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customViewportProps?: Record<string, unknown>;
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};
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export type PublicViewportOptions = {
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@ -31,7 +31,7 @@ export type PublicViewportOptions = {
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initialView?: string;
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syncGroups?: SyncGroup[];
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initialImageOptions?: InitialImageOptions;
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customViewportOptions?: Record<string, unknown>;
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customViewportProps?: Record<string, unknown>;
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};
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export type PublicDisplaySetOptions = {
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@ -172,8 +172,8 @@ function getDisplayText(mappedAnnotations, displaySet) {
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// Area is the same for all series
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const { length, width, SeriesNumber, SOPInstanceUID } = mappedAnnotations[0];
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const roundedLength = utils.roundNumber(length, 1);
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const roundedWidth = utils.roundNumber(width, 1);
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const roundedLength = utils.roundNumber(length, 2);
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const roundedWidth = utils.roundNumber(width, 2);
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const instance = displaySet.images.find(
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image => image.SOPInstanceUID === SOPInstanceUID
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@ -23,7 +23,6 @@ export default function getPTImageIdInstanceMetadata(
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dicomMetaData.CorrectedImage === undefined ||
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dicomMetaData.Units === undefined ||
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!dicomMetaData.RadiopharmaceuticalInformationSequence ||
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!dicomMetaData.RadiopharmaceuticalInformationSequence.length ||
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dicomMetaData.RadiopharmaceuticalInformationSequence[0]
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.RadionuclideHalfLife === undefined ||
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dicomMetaData.RadiopharmaceuticalInformationSequence[0]
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@ -36,22 +36,22 @@ const handlePETImageMetadata = ({ SeriesInstanceUID, StudyInstanceUID }) => {
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return;
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}
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const imageIds = instances.map(instance => instance.imageId);
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const InstanceMetadataArray = [];
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const instanceMetadataArray = [];
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imageIds.forEach(imageId => {
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const instanceMetadata = getPTImageIdInstanceMetadata(imageId);
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if (instanceMetadata) {
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InstanceMetadataArray.push(instanceMetadata);
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instanceMetadataArray.push(instanceMetadata);
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}
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});
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if (!InstanceMetadataArray.length) {
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if (!instanceMetadataArray.length) {
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return;
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}
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// try except block to prevent errors when the metadata is not correct
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let suvScalingFactors;
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try {
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suvScalingFactors = calculateSUVScalingFactors(InstanceMetadataArray);
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suvScalingFactors = calculateSUVScalingFactors(instanceMetadataArray);
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} catch (error) {
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console.log(error);
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}
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@ -60,7 +60,7 @@ const handlePETImageMetadata = ({ SeriesInstanceUID, StudyInstanceUID }) => {
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return;
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}
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InstanceMetadataArray.forEach((instanceMetadata, index) => {
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instanceMetadataArray.forEach((instanceMetadata, index) => {
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metadataProvider.addCustomMetadata(
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imageIds[index],
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'scalingModule',
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@ -32,8 +32,8 @@
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"peerDependencies": {
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"@ohif/core": "^3.0.0",
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"classnames": "^2.2.6",
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"@cornerstonejs/core": "^0.13.11",
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"@cornerstonejs/tools": "^0.20.15",
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"@cornerstonejs/core": "^0.14.4",
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"@cornerstonejs/tools": "^0.21.7",
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"@ohif/extension-cornerstone-dicom-sr": "^3.0.0",
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"dcmjs": "^0.24.5",
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"prop-types": "^15.6.2",
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@ -1,7 +1,7 @@
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import React, { useEffect, useState, useCallback } from 'react';
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import PropTypes from 'prop-types';
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import { Input, Button } from '@ohif/ui';
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import { classes, DicomMetadataStore } from '@ohif/core';
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import { DicomMetadataStore } from '@ohif/core';
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import { useTranslation } from 'react-i18next';
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const DEFAULT_MEATADATA = {
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@ -24,7 +24,8 @@ const DEFAULT_MEATADATA = {
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*/
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export default function PanelPetSUV({ servicesManager, commandsManager }) {
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const { t } = useTranslation('PanelSUV');
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const { DisplaySetService } = servicesManager.services;
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const { DisplaySetService, ToolGroupService, ToolBarService } =
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servicesManager.services;
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const [metadata, setMetadata] = useState(DEFAULT_MEATADATA);
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const [ptDisplaySet, setPtDisplaySet] = useState(null);
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@ -108,6 +109,26 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
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if (!ptDisplaySet) {
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throw new Error('No ptDisplaySet found');
|
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}
|
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|
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const toolGroupIds = ToolGroupService.getToolGroupIds();
|
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|
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// Todo: we don't have a proper way to perform a toggle command and update the
|
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// state for the toolbar, so here, we manually toggle the toolbar
|
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|
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// Todo: Crosshairs have bugs for the camera reset currently, so we need to
|
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// force turn it off before we update the metadata
|
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toolGroupIds.forEach(toolGroupId => {
|
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commandsManager.runCommand('toggleCrosshairs', {
|
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toolGroupId,
|
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toggledState: false,
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});
|
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});
|
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ToolBarService.state.toggles['Crosshairs'] = false;
|
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ToolBarService._broadcastEvent(
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ToolBarService.EVENTS.TOOL_BAR_STATE_MODIFIED
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);
|
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|
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// metadata should be dcmjs naturalized
|
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DicomMetadataStore.updateMetadataForSeries(
|
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ptDisplaySet.StudyInstanceUID,
|
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@ -140,7 +161,7 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
|
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}}
|
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/>
|
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<Input
|
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label={t('Patient Weight')}
|
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label={t('Patient Weight (kg)')}
|
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labelClassName="text-white"
|
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className="mt-1 mb-2 bg-black border-primary-main"
|
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type="text"
|
||||
@ -153,7 +174,7 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
|
||||
}}
|
||||
/>
|
||||
<Input
|
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label={t('Total Dose')}
|
||||
label={t('Total Dose (Mbq)')}
|
||||
labelClassName="text-white"
|
||||
className="mt-1 mb-2 bg-black border-primary-main"
|
||||
type="text"
|
||||
@ -171,7 +192,7 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
|
||||
}}
|
||||
/>
|
||||
<Input
|
||||
label={t('Half Life')}
|
||||
label={t('Half Life (s)')}
|
||||
labelClassName="text-white"
|
||||
className="mt-1 mb-2 bg-black border-primary-main"
|
||||
type="text"
|
||||
@ -189,7 +210,7 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
|
||||
}}
|
||||
/>
|
||||
<Input
|
||||
label={t('Injection Time')}
|
||||
label={t('Injection Time (Seconds)')}
|
||||
labelClassName="text-white"
|
||||
className="mt-1 mb-2 bg-black border-primary-main"
|
||||
type="text"
|
||||
@ -207,7 +228,7 @@ export default function PanelPetSUV({ servicesManager, commandsManager }) {
|
||||
}}
|
||||
/>
|
||||
<Input
|
||||
label={t('Acquisition Time')}
|
||||
label={t('Acquisition Time (Seconds)')}
|
||||
labelClassName="text-white"
|
||||
className="mt-1 mb-2 bg-black border-primary-main"
|
||||
type="text"
|
||||
|
||||
@ -297,7 +297,7 @@ export default function PanelRoiThresholdSegmentation({
|
||||
name={'info'}
|
||||
className={'ml-4 mr-3 text-primary-active'}
|
||||
/>
|
||||
<span>{'About'}</span>
|
||||
<span>{'User Guide'}</span>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@ -325,6 +325,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: true,
|
||||
target: false,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -360,6 +366,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: true,
|
||||
target: false,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -395,6 +407,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: true,
|
||||
target: false,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -439,6 +457,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -486,6 +510,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -533,6 +563,12 @@ const ptCT = {
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@ -558,9 +594,24 @@ const ptCT = {
|
||||
orientation: 'sagittal',
|
||||
background: [1, 1, 1],
|
||||
toolGroupId: 'mipToolGroup',
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: true,
|
||||
target: false,
|
||||
},
|
||||
],
|
||||
|
||||
// Custom props can be used to set custom properties which extensions
|
||||
// can react on.
|
||||
customViewportOptions: {
|
||||
customViewportProps: {
|
||||
// We use viewportDisplay to filter the viewports which are displayed
|
||||
// in mip and we set the scrollbar according to their rotation index
|
||||
// in the cornerstone extension.
|
||||
|
||||
@ -36,14 +36,14 @@ function getPanelModule({
|
||||
name: 'petSUV',
|
||||
iconName: 'edit-patient',
|
||||
iconLabel: 'PET SUV',
|
||||
label: 'PET-SUV',
|
||||
label: 'PET SUV',
|
||||
component: wrappedPanelPetSuv,
|
||||
},
|
||||
{
|
||||
name: 'ROIThresholdSeg',
|
||||
iconName: 'tool-create-threshold',
|
||||
iconLabel: 'Threshold Seg',
|
||||
label: 'Threshold-Seg',
|
||||
iconLabel: 'ROI Threshold',
|
||||
label: 'ROI Threshold',
|
||||
component: wrappedROIThresholdSeg,
|
||||
},
|
||||
];
|
||||
|
||||
@ -1,7 +1,5 @@
|
||||
# Total Metabolic Tumor Volume
|
||||
|
||||
# NOTE: THIS MODE IS STILL A WORK IN PROGRESS
|
||||
|
||||
## Introduction
|
||||
|
||||
Total Metabolic Tumor Volume (TMTV) workflow mode enables quantitatively measurement of a tumor volume in a patient's body.
|
||||
|
||||
@ -3,7 +3,7 @@ import toolbarButtons from './toolbarButtons.js';
|
||||
import { id } from './id.js';
|
||||
import initToolGroups, { toolGroupIds } from './initToolGroups.js';
|
||||
import setCrosshairsConfiguration from './utils/setCrosshairsConfiguration.js';
|
||||
import setEllipticalROIConfiguration from './utils/setEllipticalROIConfiguration.js';
|
||||
import setFusionActiveVolume from './utils/setFusionActiveVolume.js';
|
||||
|
||||
const ohif = {
|
||||
layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',
|
||||
@ -58,7 +58,7 @@ function modeFactory({ modeConfiguration }) {
|
||||
// Init Default and SR ToolGroups
|
||||
initToolGroups(toolNames, Enums, ToolGroupService, commandsManager);
|
||||
|
||||
const activateWindowLevel = () => {
|
||||
const setWindowLevelActive = () => {
|
||||
ToolBarService.recordInteraction({
|
||||
groupId: 'WindowLevel',
|
||||
itemId: 'WindowLevel',
|
||||
@ -97,7 +97,6 @@ function modeFactory({ modeConfiguration }) {
|
||||
const { unsubscribe } = ToolGroupService.subscribe(
|
||||
ToolGroupService.EVENTS.VIEWPORT_ADDED,
|
||||
() => {
|
||||
activateWindowLevel();
|
||||
// For fusion toolGroup we need to add the volumeIds for the crosshairs
|
||||
// since in the fusion viewport we don't want both PT and CT to render MIP
|
||||
// when slabThickness is modified
|
||||
@ -110,12 +109,14 @@ function modeFactory({ modeConfiguration }) {
|
||||
DisplaySetService
|
||||
);
|
||||
|
||||
setEllipticalROIConfiguration(
|
||||
setFusionActiveVolume(
|
||||
matches,
|
||||
toolNames,
|
||||
ToolGroupService,
|
||||
DisplaySetService
|
||||
);
|
||||
|
||||
setWindowLevelActive();
|
||||
}
|
||||
);
|
||||
|
||||
|
||||
@ -67,7 +67,7 @@ function _createWwwcPreset(preset, title, subtitle) {
|
||||
{
|
||||
commandName: 'setWindowLevel',
|
||||
commandOptions: {
|
||||
windowLevel: windowLevelPresets[preset],
|
||||
...windowLevelPresets[preset],
|
||||
},
|
||||
context: 'CORNERSTONE',
|
||||
},
|
||||
@ -272,8 +272,7 @@ const toolbarButtons = [
|
||||
commandName: 'displayNotification',
|
||||
commandOptions: {
|
||||
title: 'RectangleROI Threshold Tip',
|
||||
text:
|
||||
'RectangleROI Threshold tool should be used on PT Axial Viewport',
|
||||
text: 'RectangleROI Threshold tool should be used on PT Axial Viewport',
|
||||
type: 'info',
|
||||
},
|
||||
},
|
||||
@ -307,9 +306,10 @@ const toolbarButtons = [
|
||||
isAction: true, // ?
|
||||
renderer: WindowLevelMenuItem,
|
||||
items: [
|
||||
_createColormap('HSV', 'hsv'),
|
||||
_createColormap('Hot Iron', 'hot_iron'),
|
||||
_createColormap('S PET', 's_pet'),
|
||||
_createColormap('Ret Hot', 'red_hot'),
|
||||
_createColormap('Red Hot', 'red_hot'),
|
||||
_createColormap('Perfusion', 'perfusion'),
|
||||
_createColormap('Rainbow', 'rainbow_2'),
|
||||
_createColormap('SUV', 'suv'),
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
import { toolGroupIds } from '../initToolGroups';
|
||||
|
||||
export default function setEllipticalROIConfiguration(
|
||||
export default function setFusionActiveVolume(
|
||||
matches,
|
||||
toolNames,
|
||||
ToolGroupService,
|
||||
@ -22,16 +22,32 @@ export default function setEllipticalROIConfiguration(
|
||||
return;
|
||||
}
|
||||
|
||||
const toolConfig = ToolGroupService.getToolConfiguration(
|
||||
const wlToolConfig = ToolGroupService.getToolConfiguration(
|
||||
toolGroupIds.Fusion,
|
||||
toolNames.WindowLevel
|
||||
);
|
||||
|
||||
const ellipticalToolConfig = ToolGroupService.getToolConfiguration(
|
||||
toolGroupIds.Fusion,
|
||||
toolNames.EllipticalROI
|
||||
);
|
||||
|
||||
const ellipticalROIConfig = {
|
||||
...toolConfig,
|
||||
const windowLevelConfig = {
|
||||
...wlToolConfig,
|
||||
volumeId: displaySets[0].displaySetInstanceUID,
|
||||
};
|
||||
|
||||
const ellipticalROIConfig = {
|
||||
...ellipticalToolConfig,
|
||||
volumeId: displaySets[0].displaySetInstanceUID,
|
||||
};
|
||||
|
||||
ToolGroupService.setToolConfiguration(
|
||||
toolGroupIds.Fusion,
|
||||
toolNames.WindowLevel,
|
||||
windowLevelConfig
|
||||
);
|
||||
|
||||
ToolGroupService.setToolConfiguration(
|
||||
toolGroupIds.Fusion,
|
||||
toolNames.EllipticalROI,
|
||||
@ -17,7 +17,8 @@ async function editPackageJson(options) {
|
||||
description,
|
||||
author,
|
||||
license,
|
||||
files: ['dist', 'README.md'],
|
||||
main: `dist/umd/${name}/index.umd.js`,
|
||||
files: ['dist/**', 'public/**', 'README.md'],
|
||||
},
|
||||
packageJson
|
||||
);
|
||||
|
||||
@ -17,7 +17,7 @@ function getPathQuestions(packageType) {
|
||||
{
|
||||
type: 'input',
|
||||
name: 'baseDir',
|
||||
message: `What is the target path to create your ${packageType} (we recommend you do not use the OHIF ${packageType} folder (./${packageType}s) unless you are developing a core ${packageType}):`,
|
||||
message: `What is the target absolute path to create your ${packageType} (we recommend you do not use the OHIF ${packageType} folder (./${packageType}s) unless you are developing a core ${packageType}):`,
|
||||
validate: (input) => {
|
||||
if (!input) {
|
||||
console.log('Please provide a valid target directory path');
|
||||
|
||||
@ -3,7 +3,9 @@ const pkg = require('../package.json');
|
||||
|
||||
const outputFile = 'index.umd.js';
|
||||
const rootDir = path.resolve(__dirname, '../');
|
||||
const outputFolder = path.join(__dirname, '../dist');
|
||||
const outputFolder = path.join(__dirname, `../dist/umd/${pkg.name}/`);
|
||||
|
||||
// Todo: add ESM build for the extension in addition to umd build
|
||||
|
||||
const config = {
|
||||
mode: 'production',
|
||||
@ -14,6 +16,7 @@ const config = {
|
||||
filename: outputFile,
|
||||
library: pkg.name,
|
||||
libraryTarget: 'umd',
|
||||
chunkFilename: '[name].chunk.js',
|
||||
umdNamedDefine: true,
|
||||
globalObject: "typeof self !== 'undefined' ? self : this",
|
||||
},
|
||||
@ -46,14 +49,14 @@ const config = {
|
||||
loader: 'babel-loader',
|
||||
exclude: /(node_modules|bower_components)/,
|
||||
resolve: {
|
||||
extensions: ['.js', '.jsx', '.ts', '.tsx',],
|
||||
extensions: ['.js', '.jsx', '.ts', '.tsx'],
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
resolve: {
|
||||
modules: [path.resolve('./node_modules'), path.resolve('./src')],
|
||||
extensions: ['.json', '.js', '.jsx', '.tsx', '.ts',],
|
||||
extensions: ['.json', '.js', '.jsx', '.tsx', '.ts'],
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@ -1,7 +1,6 @@
|
||||
{
|
||||
"repository": "OHIF/Viewers",
|
||||
"keywords": ["ohif-extension"],
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"engines": {
|
||||
"node": ">=14",
|
||||
@ -51,8 +50,8 @@
|
||||
"dotenv": "^14.1.0",
|
||||
"eslint": "^5.0.1",
|
||||
"eslint-loader": "^2.0.0",
|
||||
"uglifyjs-webpack-plugin": "^1.2.7",
|
||||
"webpack": "^4.12.2",
|
||||
"webpack-cli": "^3.0.8"
|
||||
"webpack": "^5.50.0",
|
||||
"webpack-merge": "^5.7.3",
|
||||
"webpack-cli": "^4.7.2"
|
||||
}
|
||||
}
|
||||
|
||||
@ -3,8 +3,9 @@ const pkg = require('../package.json');
|
||||
|
||||
const outputFile = 'index.umd.js';
|
||||
const rootDir = path.resolve(__dirname, '../');
|
||||
const outputFolder = path.join(__dirname, '../dist');
|
||||
const outputFolder = path.join(__dirname, `../dist/umd/${pkg.name}/`);
|
||||
|
||||
// Todo: add ESM build for the mode in addition to umd build
|
||||
const config = {
|
||||
mode: 'production',
|
||||
entry: rootDir + '/' + pkg.module,
|
||||
@ -14,6 +15,7 @@ const config = {
|
||||
filename: outputFile,
|
||||
library: pkg.name,
|
||||
libraryTarget: 'umd',
|
||||
chunkFilename: '[name].chunk.js',
|
||||
umdNamedDefine: true,
|
||||
globalObject: "typeof self !== 'undefined' ? self : this",
|
||||
},
|
||||
@ -46,14 +48,14 @@ const config = {
|
||||
loader: 'babel-loader',
|
||||
exclude: /(node_modules|bower_components)/,
|
||||
resolve: {
|
||||
extensions: ['.js', '.jsx', '.ts', '.tsx',],
|
||||
extensions: ['.js', '.jsx', '.ts', '.tsx'],
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
resolve: {
|
||||
modules: [path.resolve('./node_modules'), path.resolve('./src')],
|
||||
extensions: ['.json', '.js', '.jsx', '.tsx', '.ts',],
|
||||
extensions: ['.json', '.js', '.jsx', '.tsx', '.ts'],
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@ -1,7 +1,6 @@
|
||||
{
|
||||
"repository": "OHIF/Viewers",
|
||||
"keywords": ["ohif-mode"],
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"engines": {
|
||||
"node": ">=14",
|
||||
@ -43,8 +42,8 @@
|
||||
"dotenv": "^14.1.0",
|
||||
"eslint": "^5.0.1",
|
||||
"eslint-loader": "^2.0.0",
|
||||
"uglifyjs-webpack-plugin": "^1.2.7",
|
||||
"webpack": "^4.12.2",
|
||||
"webpack-cli": "^3.0.8"
|
||||
"webpack": "^5.50.0",
|
||||
"webpack-merge": "^5.7.3",
|
||||
"webpack-cli": "^4.7.2"
|
||||
}
|
||||
}
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"cornerstone-math": "0.1.9",
|
||||
"cornerstone-wado-image-loader": "^4.2.0",
|
||||
"cornerstone-wado-image-loader": "^4.2.1",
|
||||
"dicom-parser": "^1.8.9",
|
||||
"@ohif/ui": "^2.0.0"
|
||||
},
|
||||
|
||||
@ -109,7 +109,7 @@ Below, you can find the gap analysis between the `OHIF-v2` and `OHIF-v3`:
|
||||
</tr>
|
||||
<tr>
|
||||
<td align="left">Segmentation support</td>
|
||||
<td align="center">🔜</td>
|
||||
<td align="center">✅</td>
|
||||
<td align="center">Not Started</td>
|
||||
</tr>
|
||||
<tr>
|
||||
@ -129,7 +129,7 @@ Below, you can find the gap analysis between the `OHIF-v2` and `OHIF-v3`:
|
||||
</tr>
|
||||
<tr>
|
||||
<td align="left">VTK Extension + MIP / MPR layout</td>
|
||||
<td align="center">🔜</td>
|
||||
<td align="center">✅</td>
|
||||
<td align="center">3D rendering and 3D annotation tools via Cornerstone3D</td>
|
||||
</tr>
|
||||
<tr>
|
||||
|
||||
@ -11,6 +11,15 @@ and other resources that we have provided to the community in the past:
|
||||
|
||||
## 2022
|
||||
|
||||
### OHIF Demo to Interns
|
||||
[[Slides]](https://docs.google.com/presentation/d/1a2PkUnqkVMaXaBsuFn7-PPlBJULU3dBwzI_44gKFeYI/edit?usp=sharing)
|
||||
|
||||
### SIIM 2022 - Updates from the Imaging Informatics Community
|
||||
We participated in the SIIM 2022 conference to give update for the imaging
|
||||
informatics community.
|
||||
[[Slides]](https://docs.google.com/presentation/d/1EUGaUzQtGhZbZWpGLe6ONqChpVMw9Qr9l3KHODevMow/edit?usp=sharing)
|
||||
[[Video]](https://vimeo.com/734463662/dbd5a88371)
|
||||
|
||||
### The Imaging Network Ontario - Remote
|
||||
|
||||
The Imaging Network Ontario (ImNO) is an annual symposium that brings together
|
||||
|
||||
@ -218,7 +218,6 @@ module.exports = {
|
||||
|
||||
// We want users to submit doc updates to the upstream/next version!
|
||||
// Otherwise we risk losing the update on the next release.
|
||||
const nextVersionDocsDirPath = 'docs';
|
||||
return `https://github.com/OHIF/Viewers/edit/v3-stable/platform/docs/docs/${docPath}`;
|
||||
},
|
||||
showLastUpdateAuthor: true,
|
||||
@ -234,11 +233,10 @@ module.exports = {
|
||||
// : undefined,
|
||||
versions: {
|
||||
current: {
|
||||
label: 'Version 3.1 - Cornerstone3D 🚧',
|
||||
label: 'Version 3.2 - Cornerstone3D Volume API 🚧',
|
||||
},
|
||||
'2.0': {
|
||||
label: 'Version 2.0 - Master branch',
|
||||
//path: `2.0`,
|
||||
},
|
||||
},
|
||||
},
|
||||
|
||||
@ -16,7 +16,7 @@
|
||||
[build.environment]
|
||||
# If 'production', `yarn install` does not install devDependencies
|
||||
NODE_ENV = "development"
|
||||
NODE_VERSION = "14.19.1"
|
||||
NODE_VERSION = "16.14.0"
|
||||
YARN_VERSION = "1.22.5"
|
||||
RUBY_VERSION = "2.6.2"
|
||||
YARN_FLAGS = "--no-ignore-optional --pure-lockfile"
|
||||
|
||||
@ -27,14 +27,14 @@
|
||||
"write-heading-ids": "docusaurus write-heading-ids"
|
||||
},
|
||||
"dependencies": {
|
||||
"@docusaurus/core": "2.0.0-beta.20",
|
||||
"@docusaurus/plugin-client-redirects": "2.0.0-beta.20",
|
||||
"@docusaurus/plugin-ideal-image": "2.0.0-beta.20",
|
||||
"@docusaurus/plugin-pwa": "2.0.0-beta.20",
|
||||
"@docusaurus/preset-classic": "2.0.0-beta.20",
|
||||
"@docusaurus/remark-plugin-npm2yarn": "2.0.0-beta.20",
|
||||
"@docusaurus/theme-live-codeblock": "2.0.0-beta.20",
|
||||
"@docusaurus/plugin-google-gtag": "2.0.0-beta.20",
|
||||
"@docusaurus/core": "2.0.1",
|
||||
"@docusaurus/plugin-client-redirects": "2.0.1",
|
||||
"@docusaurus/plugin-ideal-image": "2.0.1",
|
||||
"@docusaurus/plugin-pwa": "2.0.1",
|
||||
"@docusaurus/preset-classic": "2.0.1",
|
||||
"@docusaurus/remark-plugin-npm2yarn": "2.0.1",
|
||||
"@docusaurus/theme-live-codeblock": "2.0.1",
|
||||
"@docusaurus/plugin-google-gtag": "2.0.1",
|
||||
"@mdx-js/react": "^1.6.21",
|
||||
"@svgr/webpack": "^5.5.0",
|
||||
"classnames": "^2.3.1",
|
||||
|
||||
@ -1,4 +1,5 @@
|
||||
{
|
||||
"Version 3.1 - Cornerstone3D Basics": "https://62e92bf05fc5050008aa1300--ohif-platform-docs.netlify.app/",
|
||||
"Version 3.0 - Cornerstone Legacy": "https://deploy-preview-2791--ohif-platform-docs.netlify.app/",
|
||||
"Version 1.0": "https://deploy-preview-2791--ohif-platform-docs.netlify.app/1.0/"
|
||||
}
|
||||
|
||||
@ -23,7 +23,9 @@ class ImageScrollbar extends PureComponent {
|
||||
<div className="scroll">
|
||||
<div className="scroll-holder">
|
||||
<input
|
||||
className="imageSlider"
|
||||
// adding mousetrap let the mousetrap know about the scrollbar otherwise,
|
||||
// it will not capture the keyboard event
|
||||
className="imageSlider mousetrap"
|
||||
style={this.style}
|
||||
type="range"
|
||||
min="0"
|
||||
|
||||
@ -1,5 +1,6 @@
|
||||
const pluginConfig = require('../pluginConfig.json');
|
||||
const fs = require('fs');
|
||||
const glob = require('glob');
|
||||
|
||||
const autogenerationDisclaimer = `
|
||||
// THIS FILE IS AUTOGENERATED AS PART OF THE EXTENSION AND MODE PLUGIN PROCESS.
|
||||
@ -44,11 +45,12 @@ function getFormattedImportBlock(importLines) {
|
||||
}
|
||||
|
||||
function getFormattedWindowBlock(addToWindowLines) {
|
||||
let content = "const extensions = [];\n" +
|
||||
"const modes = [];\n" +
|
||||
"const modesFactory = [];\n" +
|
||||
"window.extensions = extensions;\n" +
|
||||
"window.modes = modes;\n\n";
|
||||
let content =
|
||||
'const extensions = [];\n' +
|
||||
'const modes = [];\n' +
|
||||
'const modesFactory = [];\n' +
|
||||
'window.extensions = extensions;\n' +
|
||||
'window.modes = modes;\n\n';
|
||||
|
||||
addToWindowLines.forEach(addToWindowLine => {
|
||||
content += addToWindowLine;
|
||||
@ -58,34 +60,67 @@ function getFormattedWindowBlock(addToWindowLines) {
|
||||
}
|
||||
|
||||
function getRuntimeLoadModesExtensions() {
|
||||
return "\n\n// Add a dynamic runtime loader\n" +
|
||||
"export default async () => {\n" +
|
||||
" for(const modeFactory of modesFactory) {\n" +
|
||||
" const newModes = await modeFactory(modes,extensions);\n" +
|
||||
" newModes.forEach(newMode => modes.push(newMode));\n" +
|
||||
"}\n}\n";
|
||||
return (
|
||||
'\n\n// Add a dynamic runtime loader\n' +
|
||||
'export default async () => {\n' +
|
||||
' for(const modeFactory of modesFactory) {\n' +
|
||||
' const newModes = await modeFactory(modes,extensions);\n' +
|
||||
' newModes.forEach(newMode => modes.push(newMode));\n' +
|
||||
'}\n}\n'
|
||||
);
|
||||
}
|
||||
|
||||
const createCopyPluginFromExtensions = (SRC_DIR, DIST_DIR, plugins) => {
|
||||
const createCopyPluginToDistForLink = (
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
plugins,
|
||||
folderName
|
||||
) => {
|
||||
return plugins
|
||||
.map(plugin => {
|
||||
const from = `${SRC_DIR}/../node_modules/${plugin.packageName}/${folderName}/`;
|
||||
const exists = fs.existsSync(from);
|
||||
return exists
|
||||
? {
|
||||
from,
|
||||
to: DIST_DIR,
|
||||
toType: 'dir',
|
||||
}
|
||||
: undefined;
|
||||
})
|
||||
.filter(x => !!x);
|
||||
};
|
||||
|
||||
return plugins.map(plugin => {
|
||||
const from = `${SRC_DIR}/../node_modules/${plugin.packageName}/public/`;
|
||||
const exists = fs.existsSync(from);
|
||||
return exists ? {
|
||||
from,
|
||||
to: DIST_DIR,
|
||||
toType: 'dir',
|
||||
} : undefined;
|
||||
}
|
||||
).filter(x => !!x);
|
||||
}
|
||||
const createCopyPluginToDistForBuild = (
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
plugins,
|
||||
folderName
|
||||
) => {
|
||||
return plugins
|
||||
.map(plugin => {
|
||||
const from = `${SRC_DIR}/../../../node_modules/${plugin.packageName}/${folderName}/`;
|
||||
const exists = fs.existsSync(from);
|
||||
return exists
|
||||
? {
|
||||
from,
|
||||
to: DIST_DIR,
|
||||
toType: 'dir',
|
||||
}
|
||||
: undefined;
|
||||
})
|
||||
.filter(x => !!x);
|
||||
};
|
||||
|
||||
function writePluginImportsFile(SRC_DIR, DIST_DIR) {
|
||||
let pluginImportsJsContent = autogenerationDisclaimer;
|
||||
|
||||
const extensionLines = constructLines(pluginConfig.extensions, 'extensions');
|
||||
const modeLines = constructLines(pluginConfig.modes, 'modes');
|
||||
const modesFactoryLines = constructLines(pluginConfig.modesFactory, 'modesFactory');
|
||||
const modesFactoryLines = constructLines(
|
||||
pluginConfig.modesFactory,
|
||||
'modesFactory'
|
||||
);
|
||||
|
||||
pluginImportsJsContent += getFormattedImportBlock([
|
||||
...extensionLines.importLines,
|
||||
@ -112,17 +147,71 @@ function writePluginImportsFile(SRC_DIR, DIST_DIR) {
|
||||
}
|
||||
);
|
||||
|
||||
const copyPluginFromExtensions = createCopyPluginFromExtensions(
|
||||
SRC_DIR, DIST_DIR,
|
||||
// Build packages using cli add-mode and add-extension
|
||||
// will get added to the root node_modules, but the linked packages
|
||||
// will be hosted at the viewer node_modules.
|
||||
|
||||
const copyPluginPublicToDistBuild = createCopyPluginToDistForBuild(
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
[
|
||||
...pluginConfig.modesFactory,
|
||||
...pluginConfig.modes,
|
||||
...pluginConfig.extensions,
|
||||
...pluginConfig.umd,
|
||||
]
|
||||
)
|
||||
],
|
||||
'public'
|
||||
);
|
||||
|
||||
return copyPluginFromExtensions;
|
||||
const copyPluginPublicToDistLink = createCopyPluginToDistForLink(
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
[
|
||||
...pluginConfig.modesFactory,
|
||||
...pluginConfig.modes,
|
||||
...pluginConfig.extensions,
|
||||
...pluginConfig.umd,
|
||||
],
|
||||
'public'
|
||||
);
|
||||
|
||||
// Temporary way to copy chunks from the dist folder so that the become
|
||||
// available
|
||||
const copyPluginDistToDistBuild = createCopyPluginToDistForBuild(
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
[
|
||||
...pluginConfig.modesFactory,
|
||||
...pluginConfig.modes,
|
||||
...pluginConfig.extensions,
|
||||
...pluginConfig.umd,
|
||||
],
|
||||
'dist'
|
||||
);
|
||||
|
||||
const copyPluginDistToDistLink = createCopyPluginToDistForLink(
|
||||
SRC_DIR,
|
||||
DIST_DIR,
|
||||
[
|
||||
...pluginConfig.modesFactory,
|
||||
...pluginConfig.modes,
|
||||
...pluginConfig.extensions,
|
||||
...pluginConfig.umd,
|
||||
],
|
||||
'dist'
|
||||
);
|
||||
|
||||
console.log('copy plugins', [...copyPluginPublicToDistBuild,
|
||||
...copyPluginPublicToDistLink,
|
||||
...copyPluginDistToDistBuild,
|
||||
...copyPluginDistToDistLink,
|
||||
])
|
||||
return [
|
||||
...copyPluginPublicToDistBuild,
|
||||
...copyPluginPublicToDistLink,
|
||||
...copyPluginDistToDistBuild,
|
||||
...copyPluginDistToDistLink,
|
||||
];
|
||||
}
|
||||
|
||||
module.exports = writePluginImportsFile;
|
||||
|
||||
@ -20,7 +20,7 @@
|
||||
[build.environment]
|
||||
# If 'production', `yarn install` does not install devDependencies
|
||||
NODE_ENV = "development"
|
||||
NODE_VERSION = "14.19.1"
|
||||
NODE_VERSION = "16.14.0"
|
||||
YARN_VERSION = "1.22.5"
|
||||
RUBY_VERSION = "2.6.2"
|
||||
YARN_FLAGS = "--no-ignore-optional --pure-lockfile"
|
||||
|
||||
@ -62,7 +62,7 @@
|
||||
"config-point": "^0.4.8",
|
||||
"core-js": "^3.16.1",
|
||||
"cornerstone-math": "^0.1.9",
|
||||
"cornerstone-wado-image-loader": "^4.2.0",
|
||||
"cornerstone-wado-image-loader": "^4.2.1",
|
||||
"dcmjs": "^0.24.5",
|
||||
"detect-gpu": "^4.0.16",
|
||||
"dicom-parser": "^1.8.9",
|
||||
@ -90,6 +90,7 @@
|
||||
"cypress-file-upload": "^3.5.3",
|
||||
"identity-obj-proxy": "3.0.x",
|
||||
"lodash": "4.17.15",
|
||||
"glob": "^8.0.3",
|
||||
"tailwindcss": "2.2.4",
|
||||
"terser-webpack-plugin": "^5.1.1",
|
||||
"webpack": "^5.50.0",
|
||||
|
||||
@ -33,10 +33,12 @@
|
||||
{
|
||||
"packageName": "@ohif/mode-longitudinal",
|
||||
"version": "3.0.0"
|
||||
},
|
||||
{
|
||||
"packageName": "@ohif/mode-tmtv",
|
||||
"version": "3.0.0"
|
||||
}
|
||||
],
|
||||
"modesFactory": [
|
||||
],
|
||||
"umd": [
|
||||
]
|
||||
"modesFactory": [],
|
||||
"umd": []
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user