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fix(PT measurement units): Use the modality unit that arrives from cornerstone3d instead of calculating the modality unit (again) here. (#3533)

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This commit is contained in:
Joe Boccanfuso 2023-07-13 09:03:17 -04:00 committed by GitHub
parent 93a009f1a6
commit 18156bb7b1
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GPG Key ID: 4AEE18F83AFDEB23
12 changed files with 49 additions and 59 deletions
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6
extensions/cornerstone-dicom-sr/package.json
View File

@ -44,9 +44,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.4.1",
"@cornerstonejs/core": "^1.4.1",
"@cornerstonejs/tools": "^1.4.1",
"@cornerstonejs/adapters": "^1.4.4",
"@cornerstonejs/core": "^1.4.4",
"@cornerstonejs/tools": "^1.4.4",
"classnames": "^2.3.2"
}
}

8
extensions/cornerstone/package.json
View File

@ -52,10 +52,10 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.4.1",
"@cornerstonejs/core": "^1.4.1",
"@cornerstonejs/streaming-image-volume-loader": "^1.4.1",
"@cornerstonejs/tools": "^1.4.1",
"@cornerstonejs/adapters": "^1.4.4",
"@cornerstonejs/core": "^1.4.4",
"@cornerstonejs/streaming-image-volume-loader": "^1.4.4",
"@cornerstonejs/tools": "^1.4.4",
"@kitware/vtk.js": "27.3.1",
"html2canvas": "^1.4.1",
"lodash.debounce": "4.0.8",

6
extensions/cornerstone/src/utils/measurementServiceMappings/CircleROI.ts
View File

@ -1,6 +1,5 @@
import SUPPORTED_TOOLS from './constants/supportedTools';
import getSOPInstanceAttributes from './utils/getSOPInstanceAttributes';
import getModalityUnit from './utils/getModalityUnit';
import { utils } from '@ohif/core';
const CircleROI = {
@ -112,8 +111,7 @@ function getMappedAnnotations(annotation, DisplaySetService) {
);
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality } = targetStats;
const unit = getModalityUnit(Modality);
const { mean, stdDev, max, area, Modality, modalityUnit } = targetStats;
annotations.push({
SeriesInstanceUID,
@ -121,7 +119,7 @@ function getMappedAnnotations(annotation, DisplaySetService) {
SeriesNumber,
frameNumber,
Modality,
unit,
unit: modalityUnit,
mean,
stdDev,
max,

6
extensions/cornerstone/src/utils/measurementServiceMappings/EllipticalROI.ts
View File

@ -1,6 +1,5 @@
import SUPPORTED_TOOLS from './constants/supportedTools';
import getSOPInstanceAttributes from './utils/getSOPInstanceAttributes';
import getModalityUnit from './utils/getModalityUnit';
import { utils } from '@ohif/core';
const EllipticalROI = {
@ -112,8 +111,7 @@ function getMappedAnnotations(annotation, displaySetService) {
);
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality } = targetStats;
const unit = getModalityUnit(Modality);
const { mean, stdDev, max, area, Modality, modalityUnit } = targetStats;
annotations.push({
SeriesInstanceUID,
@ -121,7 +119,7 @@ function getMappedAnnotations(annotation, displaySetService) {
SeriesNumber,
frameNumber,
Modality,
unit,
unit: modalityUnit,
mean,
stdDev,
max,

6
extensions/cornerstone/src/utils/measurementServiceMappings/RectangleROI.ts
View File

@ -1,6 +1,5 @@
import SUPPORTED_TOOLS from './constants/supportedTools';
import getSOPInstanceAttributes from './utils/getSOPInstanceAttributes';
import getModalityUnit from './utils/getModalityUnit';
import { utils } from '@ohif/core';
const RectangleROI = {
@ -106,8 +105,7 @@ function getMappedAnnotations(annotation, DisplaySetService) {
);
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality } = targetStats;
const unit = getModalityUnit(Modality);
const { mean, stdDev, max, area, Modality, modalityUnit } = targetStats;
annotations.push({
SeriesInstanceUID,
@ -115,7 +113,7 @@ function getMappedAnnotations(annotation, DisplaySetService) {
SeriesNumber,
frameNumber,
Modality,
unit,
unit: modalityUnit,
mean,
stdDev,
max,

11
extensions/cornerstone/src/utils/measurementServiceMappings/utils/getModalityUnit.js
View File

@ -1,11 +0,0 @@
function getModalityUnit(modality) {
if (modality === 'CT') {
return 'HU';
} else if (modality === 'PT') {
return 'SUV';
} else {
return '';
}
}
export default getModalityUnit;

2
extensions/cornerstone/src/utils/measurementServiceMappings/utils/index.ts
View File

@ -4,11 +4,9 @@ import {
setAnnotationSelected,
getFirstAnnotationSelected,
} from './selection';
import getModalityUnit from './getModalityUnit';
import getSOPInstanceAttributes from './getSOPInstanceAttributes';
export {
getModalityUnit,
getHandlesFromPoints,
getSOPInstanceAttributes,
isAnnotationSelected,

4
extensions/measurement-tracking/package.json
View File

@ -30,8 +30,8 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@cornerstonejs/core": "^1.4.1",
"@cornerstonejs/tools": "^1.4.1",
"@cornerstonejs/core": "^1.4.4",
"@cornerstonejs/tools": "^1.4.4",
"@ohif/core": "3.7.0-beta.32",
"@ohif/extension-cornerstone-dicom-sr": "3.7.0-beta.32",
"@ohif/ui": "3.7.0-beta.32",

2
platform/app/package.json
View File

@ -51,7 +51,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.4.1",
"@cornerstonejs/dicom-image-loader": "^1.4.4",
"@ohif/core": "3.7.0-beta.32",
"@ohif/extension-cornerstone": "3.7.0-beta.32",
"@ohif/extension-cornerstone-dicom-rt": "3.7.0-beta.32",

2
platform/core/package.json
View File

@ -35,7 +35,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.4.1",
"@cornerstonejs/dicom-image-loader": "^1.4.4",
"@ohif/ui": "3.7.0-beta.32",
"cornerstone-math": "0.1.9",
"dicom-parser": "^1.8.21"

9
platform/core/src/classes/MetadataProvider.js
View File

@ -405,6 +405,14 @@ class MetadataProvider {
};
break;
case WADO_IMAGE_LOADER_TAGS.PER_SERIES_MODULE:
metadata = {
correctedImage: instance.CorrectedImage,
units: instance.Units,
decayCorrection: instance.DecayCorrection,
};
break;
default:
return;
}
@ -508,6 +516,7 @@ const WADO_IMAGE_LOADER_TAGS = {
MODALITY_LUT_MODULE: 'modalityLutModule',
SOP_COMMON_MODULE: 'sopCommonModule',
PET_ISOTOPE_MODULE: 'petIsotopeModule',
PER_SERIES_MODULE: 'petSeriesModule',
OVERLAY_PLANE_MODULE: 'overlayPlaneModule',
PATIENT_DEMOGRAPHIC_MODULE: 'patientDemographicModule',

46
yarn.lock
View File

@ -1589,10 +1589,10 @@
resolved "https://registry.yarnpkg.com/@colors/colors/-/colors-1.5.0.tgz#bb504579c1cae923e6576a4f5da43d25f97bdbd9"
integrity sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ==
"@cornerstonejs/adapters@^1.4.1":
version "1.4.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-1.4.1.tgz#48ca911cb76c2c6dfaab3c7c1119bf0fb400bb71"
integrity sha512-w/5c8/m7GKTGFw33vJh5IK3aJNOq9gBeQu0BSAczCBh6DfVY4JWw+ZNUZk2qRYsIcs5rIWSY0/Ykwsq3ziAblA==
"@cornerstonejs/adapters@^1.4.4":
version "1.4.4"
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-1.4.4.tgz#49e31d5f25412688ac451a666bc7a5e5937b59ec"
integrity sha512-MY7o6QX319DtjUCmJ2cHvzreFcaeKm2jwYH8uf5pCHbpjeW8W2HTifqSLec4CYTefWlxQgRAT46On9sDmGojJA==
dependencies:
"@babel/runtime-corejs2" "^7.17.8"
dcmjs "^0.29.5"
@ -1640,43 +1640,43 @@
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-openjph/-/codec-openjph-2.4.2.tgz#e96721d56f6ec96f7f95c16321d88cc8467d8d81"
integrity sha512-lgdvBvvNezleY+4pIe2ceUsJzlZe/0PipdeubQ3vZZOz3xxtHHMR1XFCl4fgd8gosR8COHuD7h6q+MwgrwBsng==
"@cornerstonejs/core@^1.4.1":
version "1.4.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-1.4.1.tgz#e7a2de14160545382771a8dbaf64935f9c654904"
integrity sha512-0pDTy4QZdaXISfs1SW04XitUmv5rn874P0M4XiEwNvP05AEr/Ib6yV95yvQD+xaq35JyEjDS0xCSEL4w9W7TmQ==
"@cornerstonejs/core@^1.4.4":
version "1.4.4"
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-1.4.4.tgz#5da3732c8881315b6b30e019c5ad85a8c6607964"
integrity sha512-FG4wGtam+jr18r6Ei2WbLp/5ENCQ4OK9xOxLoKJypXpyERsK2eOQgRFVQ1/sXTq/OQXR+2RKevlKfyYfFztvVg==
dependencies:
"@kitware/vtk.js" "27.3.1"
detect-gpu "^5.0.22"
gl-matrix "^3.4.3"
lodash.clonedeep "4.5.0"
"@cornerstonejs/dicom-image-loader@^1.4.1":
version "1.4.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-1.4.1.tgz#41ba4531e87827b83684e9de939ef5025eb53db2"
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"@cornerstonejs/dicom-image-loader@^1.4.4":
version "1.4.4"
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-1.4.4.tgz#49eae4dcb32427d7b992f10d277423692632e507"
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dependencies:
"@cornerstonejs/codec-charls" "^1.2.3"
"@cornerstonejs/codec-libjpeg-turbo-8bit" "^1.2.2"
"@cornerstonejs/codec-openjpeg" "^1.2.2"
"@cornerstonejs/codec-openjph" "^2.4.2"
"@cornerstonejs/core" "^1.4.1"
"@cornerstonejs/core" "^1.4.4"
dicom-parser "^1.8.9"
pako "^2.0.4"
uuid "^9.0.0"
"@cornerstonejs/streaming-image-volume-loader@^1.4.1":
version "1.4.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-1.4.1.tgz#7377add2ee2567793dadc4cce74012b95a201eed"
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"@cornerstonejs/streaming-image-volume-loader@^1.4.4":
version "1.4.4"
resolved "https://registry.yarnpkg.com/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-1.4.4.tgz#f92575eecd6ac5988a40c7f9e2d7a223e9948e6c"
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dependencies:
"@cornerstonejs/core" "^1.4.1"
"@cornerstonejs/core" "^1.4.4"
"@cornerstonejs/tools@^1.4.1":
version "1.4.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-1.4.1.tgz#2ea8ab701ecf93ed9d02dcd5b95ea810bcfa98a8"
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"@cornerstonejs/tools@^1.4.4":
version "1.4.4"
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dependencies:
"@cornerstonejs/core" "^1.4.1"
"@cornerstonejs/core" "^1.4.4"
lodash.clonedeep "4.5.0"
lodash.get "^4.4.2"