feat: overlapping segments (#4849)
This commit is contained in:
Pedro Köhler
GitHub
parent
5a6c2aeed9
commit
55d6393a3f
318
bun.lock
318
bun.lock
@ -33,7 +33,7 @@
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},
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"addOns/externals/devDependencies": {
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"name": "@externals/devDependencies",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@kitware/vtk.js": "32.12.0",
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@ -121,21 +121,21 @@
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},
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"addOns/externals/dicom-microscopy-viewer": {
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"name": "@externals/dicom-microscopy-viewer",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"dicom-microscopy-viewer": "^0.46.1",
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},
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},
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"extensions/cornerstone": {
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"name": "@ohif/extension-cornerstone",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^3.7.0",
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/labelmap-interpolation": "^3.7.0",
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"@cornerstonejs/polymorphic-segmentation": "^3.7.0",
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"@cornerstonejs/tools": "^3.7.0",
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"@cornerstonejs/adapters": "^3.7.1",
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"@cornerstonejs/core": "^3.7.1",
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"@cornerstonejs/labelmap-interpolation": "^3.7.1",
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"@cornerstonejs/polymorphic-segmentation": "^3.7.1",
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"@cornerstonejs/tools": "^3.7.1",
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"@itk-wasm/morphological-contour-interpolation": "1.1.0",
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"@kitware/vtk.js": "32.12.0",
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"html2canvas": "^1.4.1",
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@ -152,9 +152,9 @@
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"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
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"@cornerstonejs/codec-openjpeg": "^1.2.4",
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"@cornerstonejs/codec-openjph": "^2.4.5",
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"@cornerstonejs/dicom-image-loader": "^3.7.0",
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@cornerstonejs/dicom-image-loader": "^3.7.1",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.21",
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"hammerjs": "^2.0.8",
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@ -166,19 +166,19 @@
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},
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"extensions/cornerstone-dicom-pmap": {
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"name": "@ohif/extension-cornerstone-dicom-pmap",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^3.7.0",
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/adapters": "^3.7.1",
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"@cornerstonejs/core": "^3.7.1",
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"@kitware/vtk.js": "32.12.0",
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"react-color": "^2.19.3",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"prop-types": "^15.6.2",
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"react": "^18.3.1",
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"react-dom": "^18.3.1",
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@ -189,16 +189,16 @@
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},
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"extensions/cornerstone-dicom-rt": {
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"name": "@ohif/extension-cornerstone-dicom-rt",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"react-color": "^2.19.3",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"prop-types": "^15.6.2",
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"react": "^18.3.1",
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"react-dom": "^18.3.1",
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@ -209,19 +209,19 @@
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},
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"extensions/cornerstone-dicom-seg": {
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"name": "@ohif/extension-cornerstone-dicom-seg",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^3.7.0",
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/adapters": "^3.7.1",
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"@cornerstonejs/core": "^3.7.1",
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"@kitware/vtk.js": "32.12.0",
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"react-color": "^2.19.3",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"prop-types": "^15.6.2",
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"react": "^18.3.1",
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"react-dom": "^18.3.1",
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@ -232,19 +232,19 @@
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},
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"extensions/cornerstone-dicom-sr": {
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"name": "@ohif/extension-cornerstone-dicom-sr",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^3.7.0",
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/tools": "^3.7.0",
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"@cornerstonejs/adapters": "^3.7.1",
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"@cornerstonejs/core": "^3.7.1",
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"@cornerstonejs/tools": "^3.7.1",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
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"@ohif/extension-measurement-tracking": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
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"@ohif/extension-measurement-tracking": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -254,19 +254,19 @@
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},
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"extensions/cornerstone-dynamic-volume": {
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"name": "@ohif/extension-cornerstone-dynamic-volume",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/tools": "^3.7.0",
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"@cornerstonejs/core": "^3.7.1",
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"@cornerstonejs/tools": "^3.7.1",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.21",
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"hammerjs": "^2.0.8",
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@ -276,7 +276,7 @@
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},
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"extensions/default": {
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"name": "@ohif/extension-default",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/calculate-suv": "^1.1.0",
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@ -284,8 +284,8 @@
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"lodash.uniqby": "^4.7.0",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicomweb-client": "^0.10.4",
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"prop-types": "^15.6.2",
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@ -299,7 +299,7 @@
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},
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"extensions/dicom-microscopy": {
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"name": "@ohif/extension-dicom-microscopy",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/codec-charls": "^1.2.3",
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@ -310,10 +310,10 @@
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"mathjs": "^12.4.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/i18n": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/i18n": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"prop-types": "^15.6.2",
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"react": "^18.3.1",
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"react-dom": "^18.3.1",
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@ -324,14 +324,14 @@
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},
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"extensions/dicom-pdf": {
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"name": "@ohif/extension-dicom-pdf",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -341,14 +341,14 @@
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},
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"extensions/dicom-video": {
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"name": "@ohif/extension-dicom-video",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -358,20 +358,20 @@
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},
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"extensions/measurement-tracking": {
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"name": "@ohif/extension-measurement-tracking",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.128",
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"@xstate/react": "^3.2.2",
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"xstate": "^4.10.0",
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},
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"peerDependencies": {
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"@cornerstonejs/core": "^3.7.0",
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"@cornerstonejs/tools": "^3.7.0",
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@cornerstonejs/core": "^3.7.1",
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"@cornerstonejs/tools": "^3.7.1",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"classnames": "^2.3.2",
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"dcmjs": "*",
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"lodash.debounce": "^4.0.8",
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@ -384,14 +384,14 @@
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},
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"extensions/test-extension": {
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"name": "@ohif/extension-test",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/ui": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "0.38.0",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -401,14 +401,14 @@
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},
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"extensions/tmtv": {
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"name": "@ohif/extension-tmtv",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"classnames": "^2.3.2",
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},
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"peerDependencies": {
|
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"@ohif/core": "3.10.0-beta.125",
|
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"@ohif/ui": "3.10.0-beta.125",
|
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"@ohif/core": "3.10.0-beta.128",
|
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"@ohif/ui": "3.10.0-beta.128",
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"dcmjs": "*",
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"dicom-parser": "^1.8.9",
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"hammerjs": "^2.0.8",
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@ -418,7 +418,7 @@
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},
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"modes/basic-dev-mode": {
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"name": "@ohif/mode-basic-dev-mode",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"i18next": "^17.0.3",
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@ -428,17 +428,17 @@
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"webpack-merge": "^5.7.3",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
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"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
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"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
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"@ohif/extension-default": "3.10.0-beta.125",
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"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
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"@ohif/extension-dicom-video": "3.10.0-beta.125",
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"@ohif/core": "3.10.0-beta.128",
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"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
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"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
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"@ohif/extension-default": "3.10.0-beta.128",
|
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"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
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"@ohif/extension-dicom-video": "3.10.0-beta.128",
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},
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},
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"modes/basic-test-mode": {
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"name": "@ohif/mode-test",
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"version": "3.10.0-beta.125",
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"version": "3.10.0-beta.128",
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"i18next": "^17.0.3",
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@ -448,19 +448,19 @@
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"webpack-merge": "^5.7.3",
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},
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"peerDependencies": {
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"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.125",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.125",
|
||||
"@ohif/extension-test": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.128",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.128",
|
||||
"@ohif/extension-test": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"modes/longitudinal": {
|
||||
"name": "@ohif/mode-longitudinal",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"i18next": "^17.0.3",
|
||||
@ -470,32 +470,32 @@
|
||||
"webpack-merge": "^5.7.3",
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.125",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.128",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"modes/microscopy": {
|
||||
"name": "@ohif/mode-microscopy",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"i18next": "^17.0.3",
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-microscopy": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-microscopy": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"modes/preclinical-4d": {
|
||||
"name": "@ohif/mode-preclinical-4d",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
},
|
||||
@ -504,17 +504,17 @@
|
||||
"webpack-merge": "^5.7.3",
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dynamic-volume": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-tmtv": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dynamic-volume": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-tmtv": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"modes/segmentation": {
|
||||
"name": "@ohif/mode-segmentation",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"i18next": "^17.0.3",
|
||||
@ -546,19 +546,19 @@
|
||||
"webpack-merge": "^5.7.3",
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"modes/tmtv": {
|
||||
"name": "@ohif/mode-tmtv",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"i18next": "^17.0.3",
|
||||
@ -568,43 +568,43 @@
|
||||
"webpack-merge": "^5.7.3",
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.125",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.128",
|
||||
"@ohif/extension-measurement-tracking": "3.10.0-beta.128",
|
||||
},
|
||||
},
|
||||
"platform/app": {
|
||||
"name": "@ohif/app",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/codec-charls": "^1.2.3",
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.0",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.1",
|
||||
"@emotion/serialize": "^1.1.3",
|
||||
"@ohif/core": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.125",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.125",
|
||||
"@ohif/extension-default": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-microscopy": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.125",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.125",
|
||||
"@ohif/extension-test": "3.10.0-beta.125",
|
||||
"@ohif/i18n": "3.10.0-beta.125",
|
||||
"@ohif/mode-basic-dev-mode": "3.10.0-beta.125",
|
||||
"@ohif/mode-longitudinal": "3.10.0-beta.125",
|
||||
"@ohif/mode-microscopy": "3.10.0-beta.125",
|
||||
"@ohif/mode-test": "3.10.0-beta.125",
|
||||
"@ohif/ui": "3.10.0-beta.125",
|
||||
"@ohif/ui-next": "3.10.0-beta.125",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-microscopy": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-pdf": "3.10.0-beta.128",
|
||||
"@ohif/extension-dicom-video": "3.10.0-beta.128",
|
||||
"@ohif/extension-test": "3.10.0-beta.128",
|
||||
"@ohif/i18n": "3.10.0-beta.128",
|
||||
"@ohif/mode-basic-dev-mode": "3.10.0-beta.128",
|
||||
"@ohif/mode-longitudinal": "3.10.0-beta.128",
|
||||
"@ohif/mode-microscopy": "3.10.0-beta.128",
|
||||
"@ohif/mode-test": "3.10.0-beta.128",
|
||||
"@ohif/ui": "3.10.0-beta.128",
|
||||
"@ohif/ui-next": "3.10.0-beta.128",
|
||||
"@svgr/webpack": "^8.1.0",
|
||||
"@types/react": "^18.3.3",
|
||||
"classnames": "^2.3.2",
|
||||
@ -645,7 +645,7 @@
|
||||
},
|
||||
"platform/cli": {
|
||||
"name": "@ohif/cli",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"bin": {
|
||||
"ohif-cli": "src/index.js",
|
||||
},
|
||||
@ -669,7 +669,7 @@
|
||||
},
|
||||
"platform/core": {
|
||||
"name": "@ohif/core",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"dcmjs": "*",
|
||||
@ -694,15 +694,15 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.0",
|
||||
"@ohif/ui": "3.10.0-beta.125",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.1",
|
||||
"@ohif/ui": "3.10.0-beta.128",
|
||||
"cornerstone-math": "0.1.9",
|
||||
"dicom-parser": "^1.8.21",
|
||||
},
|
||||
},
|
||||
"platform/i18n": {
|
||||
"name": "@ohif/i18n",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"i18next-locize-backend": "^2.0.0",
|
||||
@ -727,7 +727,7 @@
|
||||
},
|
||||
"platform/ui": {
|
||||
"name": "@ohif/ui",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@testing-library/react": "^13.1.0",
|
||||
"browser-detect": "^0.2.28",
|
||||
@ -787,7 +787,7 @@
|
||||
},
|
||||
"platform/ui-next": {
|
||||
"name": "@ohif/ui-next",
|
||||
"version": "3.10.0-beta.125",
|
||||
"version": "3.10.0-beta.128",
|
||||
"dependencies": {
|
||||
"@radix-ui/react-accordion": "^1.2.0",
|
||||
"@radix-ui/react-checkbox": "^1.1.1",
|
||||
@ -1095,7 +1095,7 @@
|
||||
|
||||
"@colors/colors": ["@colors/colors@1.5.0", "", {}, "sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ=="],
|
||||
|
||||
"@cornerstonejs/adapters": ["@cornerstonejs/adapters@3.7.0", "", { "dependencies": { "@babel/runtime-corejs2": "^7.17.8", "buffer": "^6.0.3", "dcmjs": "^0.29.8", "gl-matrix": "^3.4.3", "ndarray": "^1.0.19" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.0", "@cornerstonejs/tools": "^3.7.0" } }, "sha512-7ROFACNjT4W8dukUoKwggHhl+tjg0rdDpYDq8rM6b0c0gO2MgYKbU55t9MoT682yIuebt81jCsAbFSRGVzf45Q=="],
|
||||
"@cornerstonejs/adapters": ["@cornerstonejs/adapters@3.7.1", "", { "dependencies": { "@babel/runtime-corejs2": "^7.17.8", "buffer": "^6.0.3", "dcmjs": "^0.29.8", "gl-matrix": "^3.4.3", "ndarray": "^1.0.19" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.1", "@cornerstonejs/tools": "^3.7.1" } }, "sha512-aREkDwxmoIxBT4xJs00i7ghI9kCdKa7hmmDdCxw54lD0kI6aGLAHrwIeeYl+C19suyNH18duwuy1E/GYLfg5pA=="],
|
||||
|
||||
"@cornerstonejs/calculate-suv": ["@cornerstonejs/calculate-suv@1.1.0", "", {}, "sha512-Q9XraiDJif9aMFArD2iEuDO/HXbcRVCqB7KfaHgDrdTTjgDFovS91Psbdim7crypRSvE6dh/+HKeFNHdvNkA6w=="],
|
||||
|
||||
@ -1107,15 +1107,15 @@
|
||||
|
||||
"@cornerstonejs/codec-openjph": ["@cornerstonejs/codec-openjph@2.4.7", "", {}, "sha512-qvP4q4JDib7mi9r7LqKOwqz7YZ8gjtDX4ZCezeYf8+eb7MBXCz5uXAMeVF3yz9Axw4XiIMdB/pqXkm8tqCl13w=="],
|
||||
|
||||
"@cornerstonejs/core": ["@cornerstonejs/core@3.7.0", "", { "dependencies": { "@kitware/vtk.js": "32.12.1", "comlink": "^4.4.1", "gl-matrix": "^3.4.3", "loglevel": "^1.9.2" } }, "sha512-eRCovUYO3JvFV3Dzuwc6EWn9bpm+fvp/x6SXvr3MwiO+LRw1o5bmZfeh0+m4+5xzvQJPbjNYiXPPEpLYGQIOqQ=="],
|
||||
"@cornerstonejs/core": ["@cornerstonejs/core@3.7.1", "", { "dependencies": { "@kitware/vtk.js": "32.12.1", "comlink": "^4.4.1", "gl-matrix": "^3.4.3", "loglevel": "^1.9.2" } }, "sha512-+I6rCCFW+Am5GRJoaFdl2mD8R+Z0UXRZOBUE7hfTs0F6S8+45nOrlUccIK0UJdRq3bUc+h+G2tHW/i04FFs/mg=="],
|
||||
|
||||
"@cornerstonejs/dicom-image-loader": ["@cornerstonejs/dicom-image-loader@3.7.0", "", { "dependencies": { "@cornerstonejs/codec-charls": "^1.2.3", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjph": "^2.4.5", "comlink": "^4.4.1", "dicom-parser": "^1.8.9", "jpeg-lossless-decoder-js": "^2.1.0", "pako": "^2.0.4", "uuid": "^9.0.0" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.0" } }, "sha512-MSv5A7ZcAp7uVm1ofrTaQppPm1DyOAXN0BdX8a2/fMZ2Ud4OmEtk0aoUlaJ52/hQtUvfdCqfYObBos2oBIMQ1w=="],
|
||||
"@cornerstonejs/dicom-image-loader": ["@cornerstonejs/dicom-image-loader@3.7.1", "", { "dependencies": { "@cornerstonejs/codec-charls": "^1.2.3", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjph": "^2.4.5", "comlink": "^4.4.1", "dicom-parser": "^1.8.9", "jpeg-lossless-decoder-js": "^2.1.0", "pako": "^2.0.4", "uuid": "^9.0.0" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.1" } }, "sha512-mfbZ4PjLIGRh9CaMGxw0I4skI0y3sG+z0SlH40m/cwWvfKj18T5iqoLVSovSnYhqCcKdSyljM/ZTAj1t0vfRVQ=="],
|
||||
|
||||
"@cornerstonejs/labelmap-interpolation": ["@cornerstonejs/labelmap-interpolation@3.7.0", "", { "dependencies": { "@itk-wasm/morphological-contour-interpolation": "1.1.0", "itk-wasm": "1.0.0-b.165" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.0", "@cornerstonejs/tools": "^3.7.0", "@kitware/vtk.js": "32.12.1" } }, "sha512-/1l1XsKFYeov+hrMKindJ4n6l4H2zcXFwcO+wtqE4kmfoFhXRN6RSlIXbCRzEZtFCmh0hafg7SUUcXxr0QoClQ=="],
|
||||
"@cornerstonejs/labelmap-interpolation": ["@cornerstonejs/labelmap-interpolation@3.7.1", "", { "dependencies": { "@itk-wasm/morphological-contour-interpolation": "1.1.0", "itk-wasm": "1.0.0-b.165" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.1", "@cornerstonejs/tools": "^3.7.1", "@kitware/vtk.js": "32.12.1" } }, "sha512-D9VwRPeWlIMfbGD9e5R+zPQLiqKmP0sz3kMN6pxEiDbHpJ6QirtgyJyzZRI3+Z68zL2mxUDNLbfw0GbYm9fhEg=="],
|
||||
|
||||
"@cornerstonejs/polymorphic-segmentation": ["@cornerstonejs/polymorphic-segmentation@3.7.0", "", { "dependencies": { "@icr/polyseg-wasm": "0.4.0" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.0", "@cornerstonejs/tools": "^3.7.0", "@kitware/vtk.js": "32.12.1" } }, "sha512-MYb8aXE2EwfsyPmhvhTmNdTkCq5pIlMJuVRmT6GuQ4nf2dIhx5AeZ+Ya/TRaNNumV2Fx9/9PetI8+Z8XJLAILw=="],
|
||||
"@cornerstonejs/polymorphic-segmentation": ["@cornerstonejs/polymorphic-segmentation@3.7.1", "", { "dependencies": { "@icr/polyseg-wasm": "0.4.0" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.1", "@cornerstonejs/tools": "^3.7.1", "@kitware/vtk.js": "32.12.1" } }, "sha512-CRmSSgngzQqfBIiOmVFLzcM9lmDw2ueH/Co44/RDuo437J8mTG3QfDBmKoRt0VhlkiWy+C/cVMKqHwZ63Xl7Og=="],
|
||||
|
||||
"@cornerstonejs/tools": ["@cornerstonejs/tools@3.7.0", "", { "dependencies": { "@types/offscreencanvas": "2019.7.3", "comlink": "^4.4.1", "lodash.get": "^4.4.2" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.0", "@kitware/vtk.js": "32.12.1", "@types/d3-array": "^3.0.4", "@types/d3-interpolate": "^3.0.1", "d3-array": "^3.2.3", "d3-interpolate": "^3.0.1", "gl-matrix": "^3.4.3" } }, "sha512-72lbmaAm/dnOANAUNc0OK+9aL2pFklaWBLR+kOKn8OeSh1i9RRTSEaP8zWzStaSNAcdhwQ+JOQzcMR40Eo8oNQ=="],
|
||||
"@cornerstonejs/tools": ["@cornerstonejs/tools@3.7.1", "", { "dependencies": { "@types/offscreencanvas": "2019.7.3", "comlink": "^4.4.1", "lodash.get": "^4.4.2" }, "peerDependencies": { "@cornerstonejs/core": "^3.7.1", "@kitware/vtk.js": "32.12.1", "@types/d3-array": "^3.0.4", "@types/d3-interpolate": "^3.0.1", "d3-array": "^3.2.3", "d3-interpolate": "^3.0.1", "gl-matrix": "^3.4.3" } }, "sha512-OVLfmGmQBuR9Ig1ZKy35EjwRLv6zNs6q4hrXf9EoIysMSH/mYB+V4n9/FQsqnlVh4IN0DuBqkwoUmBaGSPkspQ=="],
|
||||
|
||||
"@csstools/postcss-cascade-layers": ["@csstools/postcss-cascade-layers@1.1.1", "", { "dependencies": { "@csstools/selector-specificity": "^2.0.2", "postcss-selector-parser": "^6.0.10" }, "peerDependencies": { "postcss": "^8.2" } }, "sha512-+KdYrpKC5TgomQr2DlZF4lDEpHcoxnj5IGddYYfBWJAKfj1JtuHUIqMa+E1pJJ+z3kvDViWMqyqPlG4Ja7amQA=="],
|
||||
|
||||
|
||||
@ -46,8 +46,8 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/adapters": "^3.7.1",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
|
||||
@ -46,8 +46,8 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/adapters": "^3.7.1",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
|
||||
@ -182,7 +182,6 @@ async function _loadSegments({
|
||||
|
||||
// Todo: what should be defaults here
|
||||
const tolerance = 0.001;
|
||||
const skipOverlapping = true;
|
||||
eventTarget.addEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, evt => {
|
||||
const { percentComplete } = evt.detail;
|
||||
segmentationService._broadcastEvent(segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE, {
|
||||
@ -190,11 +189,10 @@ async function _loadSegments({
|
||||
});
|
||||
});
|
||||
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.generateToolState(
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.createFromDICOMSegBuffer(
|
||||
imageIds,
|
||||
arrayBuffer,
|
||||
metaData,
|
||||
{ skipOverlapping, tolerance, eventTarget, triggerEvent }
|
||||
{ metadataProvider: metaData, tolerance }
|
||||
);
|
||||
|
||||
let usedRecommendedDisplayCIELabValue = true;
|
||||
@ -211,15 +209,6 @@ async function _loadSegments({
|
||||
}
|
||||
});
|
||||
|
||||
if (results.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message:
|
||||
'Unsupported overlapping segments detected, segmentation rendering results may be incorrect.',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
|
||||
if (!usedRecommendedDisplayCIELabValue) {
|
||||
// Display a notification about the non-utilization of RecommendedDisplayCIELabValue
|
||||
uiNotificationService.show({
|
||||
|
||||
@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/tools": "^3.7.0",
|
||||
"@cornerstonejs/adapters": "^3.7.1",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@cornerstonejs/tools": "^3.7.1",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
|
||||
@ -42,8 +42,8 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/tools": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@cornerstonejs/tools": "^3.7.1",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
|
||||
@ -38,7 +38,7 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.0",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.1",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/ui": "3.10.0-beta.128",
|
||||
"dcmjs": "*",
|
||||
@ -51,11 +51,11 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/labelmap-interpolation": "^3.7.0",
|
||||
"@cornerstonejs/polymorphic-segmentation": "^3.7.0",
|
||||
"@cornerstonejs/tools": "^3.7.0",
|
||||
"@cornerstonejs/adapters": "^3.7.1",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@cornerstonejs/labelmap-interpolation": "^3.7.1",
|
||||
"@cornerstonejs/polymorphic-segmentation": "^3.7.1",
|
||||
"@cornerstonejs/tools": "^3.7.1",
|
||||
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"html2canvas": "^1.4.1",
|
||||
|
||||
@ -391,13 +391,13 @@ class SegmentationService extends PubSubService {
|
||||
): Promise<string> {
|
||||
const { type } = options;
|
||||
let { segmentationId } = options;
|
||||
const { labelmapBufferArray } = segDisplaySet;
|
||||
const { labelMapImages } = segDisplaySet;
|
||||
|
||||
if (type !== LABELMAP) {
|
||||
throw new Error('Only labelmap type is supported for SEG display sets right now');
|
||||
}
|
||||
|
||||
if (!labelmapBufferArray) {
|
||||
if (!labelMapImages || !labelMapImages.length) {
|
||||
throw new Error('SEG reading failed');
|
||||
}
|
||||
|
||||
@ -414,16 +414,32 @@ class SegmentationService extends PubSubService {
|
||||
}
|
||||
|
||||
const imageIds = images.map(image => image.imageId);
|
||||
const derivedImages = labelMapImages?.flat();
|
||||
const derivedImageIds = derivedImages.map(image => image.imageId);
|
||||
|
||||
const derivedSegmentationImages = await imageLoader.createAndCacheDerivedLabelmapImages(
|
||||
imageIds as string[]
|
||||
);
|
||||
|
||||
segDisplaySet.images = derivedSegmentationImages.map(image => ({
|
||||
segDisplaySet.images = derivedImages.map(image => ({
|
||||
...image,
|
||||
...metaData.get('instance', image.referencedImageId),
|
||||
}));
|
||||
|
||||
// We should parse the segmentation as separate slices to support overlapping segments.
|
||||
// This parsing should occur in the CornerstoneJS library adapters.
|
||||
// For now, we use the volume returned from the library and chop it here.
|
||||
let firstSegmentedSliceImageId = null;
|
||||
for (let i = 0; i < derivedImages.length; i++) {
|
||||
const voxelManager = derivedImages[i].voxelManager as csTypes.IVoxelManager<number>;
|
||||
const scalarData = voxelManager.getScalarData();
|
||||
voxelManager.setScalarData(scalarData);
|
||||
|
||||
// Check if this slice has any non-zero voxels and we haven't found one yet
|
||||
if (!firstSegmentedSliceImageId && scalarData.some(value => value !== 0)) {
|
||||
firstSegmentedSliceImageId = derivedImages[i].referencedImageId;
|
||||
}
|
||||
}
|
||||
|
||||
// assign the first non zero voxel image id to the segDisplaySet
|
||||
segDisplaySet.firstSegmentedSliceImageId = firstSegmentedSliceImageId;
|
||||
|
||||
const segmentsInfo = segDisplaySet.segMetadata.data;
|
||||
|
||||
const segments: { [segmentIndex: string]: cstTypes.Segment } = {};
|
||||
@ -481,30 +497,6 @@ class SegmentationService extends PubSubService {
|
||||
addColorLUT(colorLUT, colorLUTIndex);
|
||||
this._segmentationIdToColorLUTIndexMap.set(segmentationId, colorLUTIndex);
|
||||
|
||||
// now we need to chop the volume array into chunks and set the scalar data for each derived segmentation image
|
||||
const volumeScalarData = new Uint8Array(labelmapBufferArray[0]);
|
||||
|
||||
// We should parse the segmentation as separate slices to support overlapping segments.
|
||||
// This parsing should occur in the CornerstoneJS library adapters.
|
||||
// For now, we use the volume returned from the library and chop it here.
|
||||
let firstSegmentedSliceImageId = null;
|
||||
for (let i = 0; i < derivedSegmentationImages.length; i++) {
|
||||
const voxelManager = derivedSegmentationImages[i]
|
||||
.voxelManager as csTypes.IVoxelManager<number>;
|
||||
const scalarData = voxelManager.getScalarData();
|
||||
const sliceData = volumeScalarData.slice(i * scalarData.length, (i + 1) * scalarData.length);
|
||||
scalarData.set(sliceData);
|
||||
voxelManager.setScalarData(scalarData);
|
||||
|
||||
// Check if this slice has any non-zero voxels and we haven't found one yet
|
||||
if (!firstSegmentedSliceImageId && sliceData.some(value => value !== 0)) {
|
||||
firstSegmentedSliceImageId = derivedSegmentationImages[i].referencedImageId;
|
||||
}
|
||||
}
|
||||
|
||||
// assign the first non zero voxel image id to the segDisplaySet
|
||||
segDisplaySet.firstSegmentedSliceImageId = firstSegmentedSliceImageId;
|
||||
|
||||
this._broadcastEvent(EVENTS.SEGMENTATION_LOADING_COMPLETE, {
|
||||
segmentationId,
|
||||
segDisplaySet,
|
||||
@ -515,7 +507,7 @@ class SegmentationService extends PubSubService {
|
||||
representation: {
|
||||
type: LABELMAP,
|
||||
data: {
|
||||
imageIds: derivedSegmentationImages.map(image => image.imageId),
|
||||
imageIds: derivedImageIds,
|
||||
referencedVolumeId: this._getVolumeIdForDisplaySet(referencedDisplaySet),
|
||||
referencedImageIds: imageIds as string[],
|
||||
},
|
||||
@ -1163,8 +1155,8 @@ class SegmentationService extends PubSubService {
|
||||
highlightFunctionType = 'ease-in-out' // todo: make animation functions configurable from outside
|
||||
): void {
|
||||
const center = this._getSegmentCenter(segmentationId, segmentIndex);
|
||||
|
||||
if (!center) {
|
||||
console.warn('No center found for segmentation', segmentationId, segmentIndex);
|
||||
return;
|
||||
}
|
||||
|
||||
|
||||
@ -32,8 +32,8 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@cornerstonejs/core": "^3.7.0",
|
||||
"@cornerstonejs/tools": "^3.7.0",
|
||||
"@cornerstonejs/core": "^3.7.1",
|
||||
"@cornerstonejs/tools": "^3.7.1",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.128",
|
||||
"@ohif/extension-default": "3.10.0-beta.128",
|
||||
|
||||
@ -58,6 +58,9 @@ function initDefaultToolGroup(extensionManager, toolGroupService, commandsManage
|
||||
},
|
||||
},
|
||||
},
|
||||
{
|
||||
toolName: toolNames.SegmentBidirectional,
|
||||
},
|
||||
{ toolName: toolNames.Bidirectional },
|
||||
{ toolName: toolNames.DragProbe },
|
||||
{ toolName: toolNames.Probe },
|
||||
|
||||
@ -54,7 +54,7 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.0",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.1",
|
||||
"@emotion/serialize": "^1.1.3",
|
||||
"@ohif/core": "3.10.0-beta.128",
|
||||
"@ohif/extension-cornerstone": "3.10.0-beta.128",
|
||||
|
||||
@ -37,7 +37,7 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.0",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.7.1",
|
||||
"@ohif/ui": "3.10.0-beta.128",
|
||||
"cornerstone-math": "0.1.9",
|
||||
"dicom-parser": "^1.8.21"
|
||||
|
||||
48
yarn.lock
48
yarn.lock
@ -1393,10 +1393,10 @@
|
||||
resolved "https://registry.yarnpkg.com/@colors/colors/-/colors-1.5.0.tgz#bb504579c1cae923e6576a4f5da43d25f97bdbd9"
|
||||
integrity sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ==
|
||||
|
||||
"@cornerstonejs/adapters@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-3.7.0.tgz#7e16d609e1e5035585e40d7a7d919534b03ae094"
|
||||
integrity sha512-7ROFACNjT4W8dukUoKwggHhl+tjg0rdDpYDq8rM6b0c0gO2MgYKbU55t9MoT682yIuebt81jCsAbFSRGVzf45Q==
|
||||
"@cornerstonejs/adapters@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-3.7.1.tgz#9d5babdd00fc08e54aa57c14a7d36d2854ebd01c"
|
||||
integrity sha512-aREkDwxmoIxBT4xJs00i7ghI9kCdKa7hmmDdCxw54lD0kI6aGLAHrwIeeYl+C19suyNH18duwuy1E/GYLfg5pA==
|
||||
dependencies:
|
||||
"@babel/runtime-corejs2" "^7.17.8"
|
||||
buffer "^6.0.3"
|
||||
@ -1429,20 +1429,20 @@
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-openjph/-/codec-openjph-2.4.5.tgz#8690b61a86fa53ef38a70eee9d665a79229517c0"
|
||||
integrity sha512-MZCUy8VG0VG5Nl1l58+g+kH3LujAzLYTfJqkwpWI2gjSrGXnP6lgwyy4GmPRZWVoS40/B1LDNALK905cNWm+sg==
|
||||
|
||||
"@cornerstonejs/core@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-3.7.0.tgz#d31cafc237ccc7ae621d1a41e3979a721b2fdcff"
|
||||
integrity sha512-eRCovUYO3JvFV3Dzuwc6EWn9bpm+fvp/x6SXvr3MwiO+LRw1o5bmZfeh0+m4+5xzvQJPbjNYiXPPEpLYGQIOqQ==
|
||||
"@cornerstonejs/core@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-3.7.1.tgz#409fad60fa933219f5b1e5757c9dbaead058338c"
|
||||
integrity sha512-+I6rCCFW+Am5GRJoaFdl2mD8R+Z0UXRZOBUE7hfTs0F6S8+45nOrlUccIK0UJdRq3bUc+h+G2tHW/i04FFs/mg==
|
||||
dependencies:
|
||||
"@kitware/vtk.js" "32.12.1"
|
||||
comlink "^4.4.1"
|
||||
gl-matrix "^3.4.3"
|
||||
loglevel "^1.9.2"
|
||||
|
||||
"@cornerstonejs/dicom-image-loader@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-3.7.0.tgz#6446bc6f9011674b5d000b275b6b0c34efd95c2c"
|
||||
integrity sha512-MSv5A7ZcAp7uVm1ofrTaQppPm1DyOAXN0BdX8a2/fMZ2Ud4OmEtk0aoUlaJ52/hQtUvfdCqfYObBos2oBIMQ1w==
|
||||
"@cornerstonejs/dicom-image-loader@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-3.7.1.tgz#c6744624387b5a5056f416d2adebafe0fdda8a48"
|
||||
integrity sha512-mfbZ4PjLIGRh9CaMGxw0I4skI0y3sG+z0SlH40m/cwWvfKj18T5iqoLVSovSnYhqCcKdSyljM/ZTAj1t0vfRVQ==
|
||||
dependencies:
|
||||
"@cornerstonejs/codec-charls" "^1.2.3"
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit" "^1.2.2"
|
||||
@ -1454,25 +1454,25 @@
|
||||
pako "^2.0.4"
|
||||
uuid "^9.0.0"
|
||||
|
||||
"@cornerstonejs/labelmap-interpolation@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/labelmap-interpolation/-/labelmap-interpolation-3.7.0.tgz#00d7bbd056fd292b2ea53681259efd0b8f6e5f5f"
|
||||
integrity sha512-/1l1XsKFYeov+hrMKindJ4n6l4H2zcXFwcO+wtqE4kmfoFhXRN6RSlIXbCRzEZtFCmh0hafg7SUUcXxr0QoClQ==
|
||||
"@cornerstonejs/labelmap-interpolation@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/labelmap-interpolation/-/labelmap-interpolation-3.7.1.tgz#e82c887ffb3f2c3cba77c7ad84b26812aecd6a44"
|
||||
integrity sha512-D9VwRPeWlIMfbGD9e5R+zPQLiqKmP0sz3kMN6pxEiDbHpJ6QirtgyJyzZRI3+Z68zL2mxUDNLbfw0GbYm9fhEg==
|
||||
dependencies:
|
||||
"@itk-wasm/morphological-contour-interpolation" "1.1.0"
|
||||
itk-wasm "1.0.0-b.165"
|
||||
|
||||
"@cornerstonejs/polymorphic-segmentation@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/polymorphic-segmentation/-/polymorphic-segmentation-3.7.0.tgz#6bc0c71451fc8bacfcc4b2ac311ba5efda43c51e"
|
||||
integrity sha512-MYb8aXE2EwfsyPmhvhTmNdTkCq5pIlMJuVRmT6GuQ4nf2dIhx5AeZ+Ya/TRaNNumV2Fx9/9PetI8+Z8XJLAILw==
|
||||
"@cornerstonejs/polymorphic-segmentation@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/polymorphic-segmentation/-/polymorphic-segmentation-3.7.1.tgz#364a25cd10fba06dc1667d6a53b2ccd91250ffc2"
|
||||
integrity sha512-CRmSSgngzQqfBIiOmVFLzcM9lmDw2ueH/Co44/RDuo437J8mTG3QfDBmKoRt0VhlkiWy+C/cVMKqHwZ63Xl7Og==
|
||||
dependencies:
|
||||
"@icr/polyseg-wasm" "0.4.0"
|
||||
|
||||
"@cornerstonejs/tools@^3.7.0":
|
||||
version "3.7.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-3.7.0.tgz#0df08e1e9e47ab5da103592488a3a29d567537c8"
|
||||
integrity sha512-72lbmaAm/dnOANAUNc0OK+9aL2pFklaWBLR+kOKn8OeSh1i9RRTSEaP8zWzStaSNAcdhwQ+JOQzcMR40Eo8oNQ==
|
||||
"@cornerstonejs/tools@^3.7.1":
|
||||
version "3.7.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-3.7.1.tgz#19458b127b4570314f1a35d04081f59850af5bdc"
|
||||
integrity sha512-OVLfmGmQBuR9Ig1ZKy35EjwRLv6zNs6q4hrXf9EoIysMSH/mYB+V4n9/FQsqnlVh4IN0DuBqkwoUmBaGSPkspQ==
|
||||
dependencies:
|
||||
"@types/offscreencanvas" "2019.7.3"
|
||||
comlink "^4.4.1"
|
||||
|
||||
Loading…
Reference in New Issue
Block a user