feat: lesion-tracker extension (#1420)

* chore: init lesion-tracker extension

* chore: dev build for lesion-tracker extension

* fix: a more appropriate library name

* chore: fix script naming

extensions/lesion-tracker/.webpack/webpack.dev.js

@@ -0,0 +1,8 @@
+const path = require('path');
+const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
+const SRC_DIR = path.join(__dirname, '../src');
+const DIST_DIR = path.join(__dirname, '../dist');
+
+module.exports = (env, argv) => {
+  return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
+};

extensions/lesion-tracker/.webpack/webpack.prod.js

@@ -0,0 +1,38 @@
+const merge = require('webpack-merge');
+const path = require('path');
+const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
+const pkg = require('./../package.json');
+
+const ROOT_DIR = path.join(__dirname, './..');
+const SRC_DIR = path.join(__dirname, '../src');
+const DIST_DIR = path.join(__dirname, '../dist');
+
+module.exports = (env, argv) => {
+  const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
+
+  return merge(commonConfig, {
+    devtool: 'source-map',
+    stats: {
+      colors: true,
+      hash: true,
+      timings: true,
+      assets: true,
+      chunks: false,
+      chunkModules: false,
+      modules: false,
+      children: false,
+      warnings: true,
+    },
+    optimization: {
+      minimize: true,
+      sideEffects: true,
+    },
+    output: {
+      path: ROOT_DIR,
+      library: 'OHIFExtLesionTracker',
+      libraryTarget: 'umd',
+      libraryExport: 'default',
+      filename: pkg.main,
+    },
+  });
+};

extensions/lesion-tracker/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2018 Open Health Imaging Foundation
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

extensions/lesion-tracker/README.md

@@ -0,0 +1,38 @@
+# @ohif/extension-lesion-tracker
+
+This project is an OHIF extension that can be used with the Core OHIF Platform,
+either at runtime, or as an ES6 dependency, to create a medical image viewing
+application similar to that of the [legacy Lesion
+Tracker][legacy-lesion-tracker] viewer.
+
+## About
+
+...
+
+## Scope
+
+...
+
+### Configuration
+
+...
+
+### Extensions
+
+...
+
+## Build & Deploy
+
+...
+
+## Funding/Support
+
+...
+
+<!--
+  LINKS
+  -->
+
+<!-- prettier-ignore-start -->
+[legacy-lesion-tracker]: http://lesiontracker.ohif.org/studylist
+<!-- prettier-ignore-end -->

extensions/lesion-tracker/package.json

@@ -0,0 +1,40 @@
+{
+  "name": "@ohif/extension-lesion-tracker",
+  "version": "0.0.1",
+  "description": "OHIF extension for Lesion Tracker",
+  "author": "OHIF",
+  "license": "MIT",
+  "repository": "OHIF/Viewers",
+  "main": "dist/index.umd.js",
+  "module": "src/index.js",
+  "publishConfig": {
+    "access": "public"
+  },
+  "engines": {
+    "node": ">=10",
+    "npm": ">=6",
+    "yarn": ">=1.16.0"
+  },
+  "files": [
+    "dist",
+    "README.md"
+  ],
+  "scripts": {
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev:lesion-tracker": "yarn run dev",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build:package": "yarn run build",
+    "prepublishOnly": "yarn run build",
+    "start": "yarn run dev"
+  },
+  "peerDependencies": {
+    "@ohif/core": "^0.50.0",
+    "prop-types": "^15.6.2",
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6"
+  },
+  "dependencies": {
+    "@babel/runtime": "^7.5.5",
+    "classnames": "^2.2.6"
+  }
+}

extensions/lesion-tracker/src/index.js

@@ -0,0 +1,101 @@
+// SEE: Async imports (code-splitting)
+// import asyncComponent from './asyncComponent.js';
+// import OHIFDicomPDFSopClassHandler from './OHIFDicomPDFSopClassHandler.js';
+
+// const ConnectedOHIFDicomPDFViewer = asyncComponent(() =>
+//   import(
+//     /* webpackChunkName: "ConnectedOHIFDicomPDFViewer" */ './ConnectedOHIFDicomPDFViewer'
+//   )
+// );
+
+export default {
+  /**
+   * Only required property. Should be a unique value across all extensions.
+   */
+  id: 'lesion-tracker',
+
+  /**
+   * @param {object} params
+   * @param {ServicesManager} params.servicesManager
+   * @param {CommandsManager} params.commandsManager
+   */
+  getPanelModule({ servicesManager, commandsManager }) {
+    return undefined;
+    // {
+    // TODO:
+    // - Right, alternative StudyBrowser
+    // - Left, alternative Measurements Table
+    // menuOptions: [
+    //   {
+    //     // A suggested icon
+    //     // Available icons determined by consuming app
+    //     icon: 'list',
+    //     // A suggested label
+    //     label: 'Magic',
+    //     // 'right' or 'left'
+    //     from: 'right',
+    //     // The target component to toggle open/close
+    //     target: 'target-component-id',
+    //     // Overrides `defaultContext`, if specified
+    //     context: ['ACTIVE_VIEWPORT:MAGIC'],
+    //   },
+    // ],
+    // components: [
+    //   {
+    //     id: 'target-component-id',
+    //     component: MyComponent,
+    //   },
+    // ],
+    // defaultContext: ['ROUTE:VIEWER'],
+    // };
+  },
+
+  /**
+   * @param {object} params
+   * @param {ServicesManager} params.servicesManager
+   * @param {CommandsManager} params.commandsManager
+   * @returns Object
+   */
+  getToolbarModule({ servicesManager, commandsManager }) {
+    // TODO: Zoom, Levels, Pan, More (see lesiontracker.ohif.org)
+    // These may be driven through configuration of `cornerstone` extension instead of defined here
+    return {
+      definitions: [
+        {
+          id: 'say-hell-world',
+          label: '🎉 HELLO WORLD 🎉',
+          icon: 'exclamation-triangle',
+          type: 'command',
+          commandName: 'sayHelloWorld',
+        },
+      ],
+      defaultContext: 'VIEWER',
+    };
+  },
+
+  /**
+   * @param {object} params
+   * @param {ServicesManager} params.servicesManager
+   * @param {CommandsManager} params.commandsManager
+   * @returns Object
+   */
+  getCommandsModule({ servicesManager }) {
+    const { UINotificationService } = servicesManager.services;
+    return {
+      definitions: {
+        sayHelloWorld: {
+          commandFn: function() {
+            console.log(UINotificationService);
+            UINotificationService.show({
+              title: 'What does a nosey pepper do?',
+              message: 'Gets jalapeno business!',
+            });
+          },
+          storeContexts: [],
+          options: {},
+        },
+      },
+      defaultContext: ['VIEWER'],
+    };
+  },
+};

package.json

@@ -13,11 +13,13 @@
   "scripts": {
     "cm": "npx git-cz",
     "build": "lerna run build:viewer --stream",
+    "build:lt": "lerna run build:viewer:lesion-tracker --stream",
     "build:ci": "lerna run build:viewer:ci --stream",
     "build:demo": "lerna run build:viewer:demo --stream",
     "build:package": "lerna run build:viewer:package --stream",
     "build:package-all": "lerna run build:package --parallel --stream",
     "dev": "lerna run dev:viewer --stream",
+    "dev:lt": "lerna run dev:viewer:lesion-tracker --stream",
     "dev:project": ".scripts/dev.sh",
     "dev:orthanc": "lerna run dev:orthanc --stream",
     "orthanc:up": "docker-compose -f .docker/Nginx-Orthanc/docker-compose.yml up",

platform/viewer/.webpack/webpack.pwa.js

@@ -26,6 +26,7 @@ const PUBLIC_URL = process.env.PUBLIC_URL || '/';
 const APP_CONFIG = process.env.APP_CONFIG || 'config/default.js';
 const PROXY_TARGET = process.env.PROXY_TARGET;
 const PROXY_DOMAIN = process.env.PROXY_DOMAIN;
+const ENTRY_TARGET = process.env.ENTRY_TARGET || `${SRC_DIR}/index.js`;
 
 module.exports = (env, argv) => {
   const baseConfig = webpackBase(env, argv, { SRC_DIR, DIST_DIR });
@@ -33,6 +34,9 @@ module.exports = (env, argv) => {
   const hasProxy = PROXY_TARGET && PROXY_DOMAIN;
 
   const mergedConfig = merge(baseConfig, {
+    entry: {
+      app: ENTRY_TARGET,
+    },
     output: {
       path: DIST_DIR,
       filename: isProdBuild ? '[name].bundle.[chunkhash].js' : '[name].js',

platform/viewer/package.json

@@ -19,12 +19,14 @@
   "scripts": {
     "build:package": "cross-env NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.commonjs.js --progress",
     "build:viewer": "cross-env NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js --progress",
+    "build:viewer:lesion-tracker": "cross-env ENTRY_TARGET=index-lesion-tracker.js NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js --progress",
     "build:viewer:ci": "cross-env NODE_ENV=production PUBLIC_URL=/pwa/ APP_CONFIG=config/netlify.js QUICK_BUILD=true node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js",
     "build:viewer:demo": "cross-env NODE_ENV=production APP_CONFIG=config/demo.js HTML_TEMPLATE=rollbar.html QUICK_BUILD=true node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --progress --config .webpack/webpack.pwa.js",
     "build:viewer:package": "yarn run build:package",
     "dev": "cross-env NODE_ENV=development webpack-dev-server --config .webpack/webpack.pwa.js --watch",
     "dev:orthanc": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js --watch",
     "dev:viewer": "yarn run dev",
+    "dev:viewer:lesion-tracker": "cross-env ENTRY_TARGET=index-lesion-tracker.js NODE_ENV=development webpack-dev-server --config .webpack/webpack.pwa.js --watch",
     "start": "yarn run dev",
     "test:e2e": "cypress open",
     "test:e2e:ci": "percy exec -- cypress run --config video=false --record --browser chrome --spec 'cypress/integration/visual-regression/**/*'",
@@ -50,6 +52,7 @@
     "@ohif/extension-dicom-html": "^1.1.0",
     "@ohif/extension-dicom-microscopy": "^0.50.6",
     "@ohif/extension-dicom-pdf": "^1.0.1",
+    "@ohif/extension-lesion-tracker": "^0.0.1",
     "@ohif/extension-vtk": "^1.2.14",
     "@ohif/i18n": "^0.52.5",
     "@ohif/ui": "^1.1.9",

platform/viewer/src/index-lesion-tracker.js

@@ -0,0 +1,46 @@
+/**
+ * Entry point for development and production PWA builds.
+ * Packaged (NPM) builds go through `index-umd.js`
+ */
+
+import 'regenerator-runtime/runtime';
+
+import App from './App.js';
+import React from 'react';
+import ReactDOM from 'react-dom';
+
+/**
+ * EXTENSIONS
+ * =================
+ *
+ * Importing and modifying the extensions our app uses HERE allows us to leverage
+ * tree shaking and a few other niceties. However, by including them here they become
+ * "baked in" to the published application.
+ *
+ * Depending on your use case/needs, you may want to consider not adding any extensions
+ * by default HERE, and instead provide them via the extensions configuration key or
+ * by using the exported `App` component, and passing in your extensions as props using
+ * the defaultExtensions property.
+ */
+import OHIFLesionTrackerExtension from '@ohif/extension-lesion-tracker';
+import OHIFDicomPDFExtension from '@ohif/extension-dicom-pdf';
+
+/*
+ * Default Settings
+ */
+let config = {};
+
+if (window) {
+  config = window.config || {};
+}
+
+const appProps = {
+  config,
+  defaultExtensions: [OHIFLesionTrackerExtension, OHIFDicomPDFExtension],
+};
+
+/** Create App */
+const app = React.createElement(App, appProps, null);
+
+/** Render */
+ReactDOM.render(app, document.getElementById('root'));

yarn.lock

@@ -1100,34 +1100,13 @@
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@@ -11845,11 +11776,6 @@ lodash.uniq@4.5.0, lodash.uniq@^4.5.0:
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-lodash@4.17.11:
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-
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   resolved "https://registry.yarnpkg.com/lodash/-/lodash-4.17.15.tgz#b447f6670a0455bbfeedd11392eff330ea097548"
@@ -15681,10 +15607,10 @@ react-transition-group@^4.1.1:
     loose-envify "^1.4.0"
     prop-types "^15.6.2"
 
-react-vtkjs-viewport@^0.8.2:
+react-vtkjs-viewport@^0.8.3:
-  version "0.8.2"
+  version "0.8.4"
-  resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.8.2.tgz#cdccf156cb089d32b935ebc3dc5f31213ba17bef"
+  resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.8.4.tgz#6bd9837d7762b845e77f053fb8fbf4469428d594"
-  integrity sha512-2OPbU5y4ay+E6qfZw4sW19uqfBnNw9kAF1PaZ/Sk5XMEEKnebplEof9ZZtE6nhPImFqMCfu4TXzYVHIAPmwFYA==
+  integrity sha512-b90ENJzmStiahxVox+7mMwZij3NVUu//jE07PV2Qtp6E7q/eLXn6ZUwcEt9w5YHN36xLZVcx9b53ztLcXVgh/Q==
   dependencies:
     date-fns "^2.2.1"
     gl-matrix "^3.1.0"
@@ -16059,11 +15985,6 @@ regenerator-runtime@^0.11.0, regenerator-runtime@^0.11.1:
   resolved "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.11.1.tgz#be05ad7f9bf7d22e056f9726cee5017fbf19e2e9"
   integrity sha512-MguG95oij0fC3QV3URf4V2SDYGJhJnJGqvIIgdECeODCT98wSWDAJ94SSuVpYQUoTcGUIL6L4yNB7j1DFFHSBg==
 
-regenerator-runtime@^0.12.0:
-  version "0.12.1"
-  resolved "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.12.1.tgz#fa1a71544764c036f8c49b13a08b2594c9f8a0de"
-  integrity sha512-odxIc1/vDlo4iZcfXqRYFj0vpXFNoGdKMAUieAlFYO6m/nl5e9KR/beGf41z4a1FI+aQgtjhuaSlDxQ0hmkrHg==
-
 regenerator-runtime@^0.13.1, regenerator-runtime@^0.13.2:
   version "0.13.3"
   resolved "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.3.tgz#7cf6a77d8f5c6f60eb73c5fc1955b2ceb01e6bf5"