LT-115: Add CR-Target, UN-Target and EX-Target tools (WIP)
This commit is contained in:
parent
9970b8795b
commit
7cebd3c91c
@ -19,10 +19,29 @@ Meteor.startup(function() {
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touch: cornerstoneTools.deleteLesionKeyboardTool
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});
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toolManager.addTool('crTool', {
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mouse: cornerstoneTools.crTool,
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touch: cornerstoneTools.crToolTouch
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});
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toolManager.addTool('unTool', {
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mouse: cornerstoneTools.unTool,
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touch: cornerstoneTools.unToolTouch
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});
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toolManager.addTool('exTool', {
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mouse: cornerstoneTools.exTool,
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touch: cornerstoneTools.exToolTouch
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});
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var states = toolManager.getToolDefaultStates();
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states.deactivate.push('lesion');
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states.deactivate.push('nonTarget');
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states.deactivate.push('length');
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states.deactivate.push('crTool');
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states.deactivate.push('unTool');
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states.deactivate.push('exTool');
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states.activate.push('deleteLesionKeyboardTool');
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@ -4,6 +4,8 @@ Template.viewerMain.helpers({
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var buttonData = [];
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var btnGroup = [];
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buttonData.push({
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id: 'resetViewport',
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title: 'Reset Viewport',
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@ -81,10 +83,38 @@ Template.viewerMain.helpers({
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iconClasses: 'fa fa-eye'
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});
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// CR/UN/EX Tools
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var crunexToolsBtns = {
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id: 'crunexTools',
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tools:[{
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id: 'crTool',
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title: 'CR Tool',
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classes: 'imageViewerTool',
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iconClasses: 'fa fa-cr'
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},
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{
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id: 'unTool',
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title: 'UN Tool',
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classes: 'imageViewerTool',
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iconClasses: 'fa fa-un'
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},
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{
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id: 'exTool',
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title: 'EX Tool',
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classes: 'imageViewerTool',
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iconClasses: 'fa fa-ex'
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}],
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title: "CR/UN/EX",
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groupIcon: 'fa fa-exchange'
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};
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btnGroup.push(crunexToolsBtns);
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toolbarOptions.buttonData = buttonData;
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toolbarOptions.includePlayClipButton = false;
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toolbarOptions.includeLayoutButton = false;
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toolbarOptions.includeHangingProtocolButtons = false;
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toolbarOptions.btnGroup = btnGroup;
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return toolbarOptions;
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}
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});
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@ -1,3 +1,16 @@
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.viewerMain
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width: 100%
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height: 84%
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height: 84%
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//font awesome icons
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.fa-cr:before
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content: 'CR'
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font-weight: bold
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.fa-un:before
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content: 'UN'
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font-weight: bold
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.fa-ex:before
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content: 'EX'
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font-weight: bold
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10
Packages/lesiontracker/client/compatibility/crTool.js
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10
Packages/lesiontracker/client/compatibility/crTool.js
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@ -0,0 +1,10 @@
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(function($, cornerstone, cornerstoneMath, cornerstoneTools) {
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'use strict';
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var crToolInterface = cornerstoneTools.crunexTool('crTool', 'CR');
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cornerstoneTools.crTool = crToolInterface.crunex;
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cornerstoneTools.crTool.setConfiguration(crToolInterface.defaultConfiguration);
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cornerstoneTools.crToolTouch = crToolInterface.crunexTouch;
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})($, cornerstone, cornerstoneMath, cornerstoneTools);
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409
Packages/lesiontracker/client/compatibility/crunexTool.js
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409
Packages/lesiontracker/client/compatibility/crunexTool.js
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@ -0,0 +1,409 @@
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(function($, cornerstone, cornerstoneMath, cornerstoneTools) {
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'use strict';
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function crunexTool(toolType, toolName) {
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var toolInterface = {
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toolType: toolType,
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toolName: toolName
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};
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var configuration = {
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setLesionNumberCallback: setLesionNumberCallback,
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getLesionLocationCallback: getLesionLocationCallback,
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changeLesionLocationCallback: changeLesionLocationCallback,
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drawHandles: false,
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drawHandlesOnHover: false,
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arrowFirst: true
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};
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toolInterface.defaultConfiguration = configuration;
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// Used to cancel tool placement
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var keys = {
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ESC: 27
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};
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// Set lesion number
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// Get Non-Target lesions on image
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function setLesionNumberCallback(measurementData, eventData, doneCallback) {
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var lesionNumber = 1;
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doneCallback(lesionNumber);
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}
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// Define a callback to get your text annotation
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// This could be used, e.g. to open a modal
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function getLesionLocationCallback(measurementData, eventData, doneCallback) {
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// doneCallback(prompt('Enter your lesion location:'));
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}
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function changeLesionLocationCallback(measurementData, eventData, doneCallback) {
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doneCallback(prompt('Change your lesion location:'));
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}
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/// --- Mouse Tool --- ///
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///////// BEGIN ACTIVE TOOL ///////
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function addNewMeasurement(mouseEventData) {
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var element = mouseEventData.element;
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function doneCallback(lesionNumber) {
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measurementData.lesionNumber = lesionNumber;
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measurementData.active = true;
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cornerstone.updateImage(element);
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}
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var measurementData = createNewMeasurement(mouseEventData);
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var eventData = {
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mouseButtonMask: mouseEventData.which
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};
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var config = cornerstoneTools[toolType].getConfiguration();
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// Set lesion number and lesion name
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if (measurementData.lesionNumber === undefined) {
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config.setLesionNumberCallback(measurementData, mouseEventData, doneCallback);
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}
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// associate this data with this imageId so we can render it and manipulate it
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cornerstoneTools.addToolState(mouseEventData.element, toolType, measurementData);
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// since we are dragging to another place to drop the end point, we can just activate
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// the end point and let the moveHandle move it for us.
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$(element).off('CornerstoneToolsMouseMove', cornerstoneTools[toolType].mouseMoveCallback);
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$(element).off('CornerstoneToolsMouseDown', cornerstoneTools[toolType].mouseDownCallback);
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$(element).off('CornerstoneToolsMouseDownActivate', cornerstoneTools[toolType].mouseDownActivateCallback);
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$(element).off('CornerstoneToolsMouseDoubleClick', doubleClickCallback);
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// Add a flag for using Esc to cancel tool placement
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var cancelled = false;
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function cancelCallback(e) {
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// If the Esc key was pressed, set the flag to true
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if (e.which === keys.ESC) {
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cancelled = true;
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cornerstoneTools.removeToolState(mouseEventData.element, toolType, measurementData);
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}
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// Don't propagate this keydown event so it can't interfere
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// with anything outside of this tool
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return false;
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}
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// Bind a one-time event listener for the Esc key
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$(element).one('keydown', cancelCallback);
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cornerstone.updateImage(element);
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cornerstoneTools.moveNewHandle(mouseEventData, toolType, measurementData, measurementData.handles.end, function() {
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if (cancelled || cornerstoneTools.anyHandlesOutsideImage(mouseEventData, measurementData.handles)) {
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// delete the measurement
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cornerstoneTools.removeToolState(mouseEventData.element, toolType, measurementData);
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} else {
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config.getLesionLocationCallback(measurementData, mouseEventData, doneCallback);
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}
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// Unbind the Esc keydown hook
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$(element).off('keydown', cancelCallback);
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$(element).on('CornerstoneToolsMouseMove', eventData, cornerstoneTools[toolType].mouseMoveCallback);
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$(element).on('CornerstoneToolsMouseDown', eventData, cornerstoneTools[toolType].mouseDownCallback);
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$(element).on('CornerstoneToolsMouseDownActivate', eventData, cornerstoneTools[toolType].mouseDownActivateCallback);
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$(element).on('CornerstoneToolsMouseDoubleClick', eventData, doubleClickCallback);
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$(element).off('keydown', cancelCallback);
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cornerstone.updateImage(mouseEventData.element);
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});
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}
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function createNewMeasurement(mouseEventData) {
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var imageId = mouseEventData.image.imageId;
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// Get studyInstanceUid
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var study = cornerstoneTools.metaData.get('study', imageId);
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var studyInstanceUid = study.studyInstanceUid;
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var patientId = study.patientId;
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// Get seriesInstanceUid
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var series = cornerstoneTools.metaData.get('series', imageId);
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var seriesInstanceUid = series.seriesInstanceUid;
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// create the measurement data for this tool with the end handle activated
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var measurementData = {
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visible: true,
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active: true,
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handles: {
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start: {
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x: mouseEventData.currentPoints.image.x,
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y: mouseEventData.currentPoints.image.y,
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highlight: true,
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active: false
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},
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end: {
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x: mouseEventData.currentPoints.image.x,
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y: mouseEventData.currentPoints.image.y,
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highlight: true,
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active: false
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},
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textBox: {
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x: mouseEventData.currentPoints.image.x - 50,
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y: mouseEventData.currentPoints.image.y - 50,
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active: false,
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movesIndependently: false,
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drawnIndependently: true,
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allowedOutsideImage: true,
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hasBoundingBox: true
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}
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},
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imageId: imageId,
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seriesInstanceUid: seriesInstanceUid,
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studyInstanceUid: studyInstanceUid,
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patientId: patientId,
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response: '',
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isTarget: true,
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measurementType: 'nonTarget',
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toolName: toolName
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};
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return measurementData;
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}
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///////// END ACTIVE TOOL ///////
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function pointNearTool(element, data, coords) {
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var lineSegment = {
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start: cornerstone.pixelToCanvas(element, data.handles.start),
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end: cornerstone.pixelToCanvas(element, data.handles.end)
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};
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var distanceToPoint = cornerstoneMath.lineSegment.distanceToPoint(lineSegment, coords);
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if (cornerstoneTools.pointInsideBoundingBox(data.handles.textBox, coords)) {
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return true;
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}
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return distanceToPoint < 25;
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}
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function drawDottedArrow(context, start, end, color, lineWidth) {
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//variables to be used when creating the arrow
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var headLength = 10;
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var angle = Math.atan2(end.y - start.y, end.x - start.x);
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//starting path of the arrow from the start square to the end square and drawing the stroke
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context.beginPath();
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context.moveTo(start.x, start.y);
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context.lineTo(end.x, end.y);
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context.strokeStyle = color;
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context.lineWidth = lineWidth;
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//context.setLineDash([ 2, 3 ]);
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context.stroke();
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//starting a new path from the head of the arrow to one of the sides of the point
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context.beginPath();
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context.moveTo(end.x, end.y);
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context.lineTo(end.x - headLength * Math.cos(angle - Math.PI / 7), end.y - headLength * Math.sin(angle - Math.PI / 7));
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//path from the side point of the arrow, to the other side point
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context.lineTo(end.x - headLength * Math.cos(angle + Math.PI / 7), end.y - headLength * Math.sin(angle + Math.PI / 7));
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//path from the side point back to the tip of the arrow, and then again to the opposite side point
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context.lineTo(end.x, end.y);
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context.lineTo(end.x - headLength * Math.cos(angle - Math.PI / 7), end.y - headLength * Math.sin(angle - Math.PI / 7));
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//draws the paths created above
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context.strokeStyle = color;
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context.lineWidth = lineWidth;
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context.stroke();
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context.fillStyle = color;
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context.fill();
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}
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///////// BEGIN IMAGE RENDERING ///////
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function onImageRendered(e, eventData) {
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var element = eventData.element;
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// if we have no toolData for this element, return immediately as there is nothing to do
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var toolData = cornerstoneTools.getToolState(element, toolType);
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if (!toolData) {
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return;
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}
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// we have tool data for this element - iterate over each one and draw it
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var context = eventData.canvasContext.canvas.getContext('2d');
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context.setTransform(1, 0, 0, 1, 0, 0);
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var color;
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var lineWidth = cornerstoneTools.toolStyle.getToolWidth();
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var font = cornerstoneTools.textStyle.getFont();
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var config = cornerstoneTools[toolType].getConfiguration();
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context.font = font;
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for (var i = 0; i < toolData.data.length; i++) {
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var data = toolData.data[i];
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context.save();
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// configurable shadow from CornerstoneTools
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if (config && config.shadow) {
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context.shadowColor = '#000000';
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context.shadowOffsetX = 1;
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context.shadowOffsetY = 1;
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}
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if (data.active) {
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color = cornerstoneTools.toolColors.getActiveColor();
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} else {
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color = cornerstoneTools.toolColors.getToolColor();
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}
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// Draw the arrow
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var handleStartCanvas = cornerstone.pixelToCanvas(element, data.handles.start);
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var handleEndCanvas = cornerstone.pixelToCanvas(element, data.handles.end);
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var canvasTextLocation = cornerstone.pixelToCanvas(element, data.handles.textBox);
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drawDottedArrow(context, handleEndCanvas, handleStartCanvas, color, lineWidth);
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if (config.drawHandles) {
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cornerstoneTools.drawHandles(context, eventData, data.handles, color);
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} else if (config.drawHandlesOnHover && data.handles.start.active) {
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cornerstoneTools.drawHandles(context, eventData, [ data.handles.start ], color);
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} else if (config.drawHandlesOnHover && data.handles.end.active) {
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cornerstoneTools.drawHandles(context, eventData, [ data.handles.end ], color);
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}
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// Draw the text
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if (data.lesionNumber) {
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// Draw linked line as dashed
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var mid = {
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x: (handleStartCanvas.x + handleEndCanvas.x) / 2,
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y: (handleStartCanvas.y + handleEndCanvas.y) / 2
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};
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context.beginPath();
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context.strokeStyle = color;
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context.lineWidth = lineWidth;
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context.setLineDash([ 2, 3 ]);
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context.moveTo(mid.x, mid.y);
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context.lineTo(canvasTextLocation.x + 20, canvasTextLocation.y + 20);
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context.stroke();
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var boundingBox = cornerstoneTools.drawTextBox(context,data.toolName + " " + + data.lesionNumber, canvasTextLocation.x, canvasTextLocation.y, color);
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data.handles.textBox.boundingBox = boundingBox;
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}
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context.restore();
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}
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}
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// ---- Touch tool ----
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///////// BEGIN ACTIVE TOOL ///////
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function addNewMeasurementTouch(touchEventData) {
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var element = touchEventData.element;
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function doneCallback(lesionNumber) {
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measurementData.lesionNumber = lesionNumber;
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measurementData.active = true;
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cornerstone.updateImage(element);
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}
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var measurementData = createNewMeasurement(touchEventData);
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cornerstoneTools.addToolState(element, toolType, measurementData);
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$(element).off('CornerstoneToolsTouchDrag', cornerstoneTools[toolType+"Touch"].touchMoveHandle);
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$(element).off('CornerstoneToolsDragStartActive',cornerstoneTools[toolType+"Touch"].touchDownActivateCallback);
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$(element).off('CornerstoneToolsTap', cornerstoneTools[toolType+"Touch"].tapCallback);
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var config = cornerstoneTools[toolType].getConfiguration();
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// Set lesion number and lesion name
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if (measurementData.lesionName === undefined) {
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config.setLesionNumberCallback(measurementData, touchEventData, doneCallback);
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}
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cornerstone.updateImage(element);
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cornerstoneTools.moveNewHandleTouch(touchEventData, toolType, measurementData, measurementData.handles.end, function() {
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cornerstone.updateImage(element);
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if (cornerstoneTools.anyHandlesOutsideImage(touchEventData, measurementData.handles)) {
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// delete the measurement
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cornerstoneTools.removeToolState(element, toolType, measurementData);
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}
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config.getLesionLocationCallback(measurementData, touchEventData, doneCallback);
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$(element).on('CornerstoneToolsTouchDrag', cornerstoneTools[toolType+"Touch"].touchMoveHandle);
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$(element).on('CornerstoneToolsDragStartActive', cornerstoneTools[toolType+"Touch"].touchDownActivateCallback);
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$(element).on('CornerstoneToolsTap', cornerstoneTools[toolType+"Touch"].tapCallback);
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});
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}
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function doubleClickCallback(e, eventData) {
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var element = eventData.element;
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var data;
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function doneCallback(data, deleteTool) {
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if (deleteTool === true) {
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cornerstoneTools.removeToolState(element, toolType, data);
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cornerstone.updateImage(element);
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return;
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}
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data.active = false;
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cornerstone.updateImage(element);
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}
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if (e.data && e.data.mouseButtonMask && !cornerstoneTools.isMouseButtonEnabled(eventData.which, e.data.mouseButtonMask)) {
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return false;
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}
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var config = cornerstoneTools[toolType].getConfiguration();
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var coords = eventData.currentPoints.canvas;
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var toolData = cornerstoneTools.getToolState(element, toolType);
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// now check to see if there is a handle we can move
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if (!toolData) {
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return false;
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}
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for (var i = 0; i < toolData.data.length; i++) {
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data = toolData.data[i];
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if (pointNearTool(element, data, coords)) {
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data.active = true;
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cornerstone.updateImage(element);
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// Allow relabelling via a callback
|
||||
config.changeLesionLocationCallback(data, eventData, doneCallback);
|
||||
|
||||
e.stopImmediatePropagation();
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
return false; // false = causes jquery to preventDefault() and stopPropagation() this event
|
||||
}
|
||||
|
||||
|
||||
toolInterface.crunex = cornerstoneTools.mouseButtonTool({
|
||||
addNewMeasurement: addNewMeasurement,
|
||||
createNewMeasurement: createNewMeasurement,
|
||||
onImageRendered: onImageRendered,
|
||||
pointNearTool: pointNearTool,
|
||||
toolType: toolType,
|
||||
mouseDoubleClickCallback: doubleClickCallback
|
||||
});
|
||||
|
||||
toolInterface.crunexTouch = cornerstoneTools.touchTool({
|
||||
addNewMeasurement: addNewMeasurementTouch,
|
||||
createNewMeasurement: createNewMeasurement,
|
||||
onImageRendered: onImageRendered,
|
||||
pointNearTool: pointNearTool,
|
||||
toolType: toolType
|
||||
// pressCallback: doubleClickCallback
|
||||
});
|
||||
|
||||
return toolInterface;
|
||||
}
|
||||
|
||||
cornerstoneTools.crunexTool = crunexTool;
|
||||
|
||||
})($, cornerstone, cornerstoneMath, cornerstoneTools);
|
||||
9
Packages/lesiontracker/client/compatibility/exTool.js
Normal file
9
Packages/lesiontracker/client/compatibility/exTool.js
Normal file
@ -0,0 +1,9 @@
|
||||
(function($, cornerstone, cornerstoneMath, cornerstoneTools) {
|
||||
|
||||
'use strict';
|
||||
var exToolInterface = cornerstoneTools.crunexTool('exTool', 'EX');
|
||||
cornerstoneTools.exTool = exToolInterface.crunex;
|
||||
cornerstoneTools.exTool.setConfiguration(exToolInterface.defaultConfiguration);
|
||||
cornerstoneTools.exToolTouch = exToolInterface.crunexTouch;
|
||||
|
||||
})($, cornerstone, cornerstoneMath, cornerstoneTools);
|
||||
9
Packages/lesiontracker/client/compatibility/unTool.js
Normal file
9
Packages/lesiontracker/client/compatibility/unTool.js
Normal file
@ -0,0 +1,9 @@
|
||||
(function($, cornerstone, cornerstoneMath, cornerstoneTools) {
|
||||
|
||||
'use strict';
|
||||
var unToolInterface = cornerstoneTools.crunexTool('unTool', 'UN');
|
||||
cornerstoneTools.unTool = unToolInterface.crunex;
|
||||
cornerstoneTools.unTool.setConfiguration(unToolInterface.defaultConfiguration);
|
||||
cornerstoneTools.unToolTouch = unToolInterface.crunexTouch;
|
||||
|
||||
})($, cornerstone, cornerstoneMath, cornerstoneTools);
|
||||
@ -185,6 +185,16 @@ var config = {
|
||||
|
||||
cornerstoneTools.lesion.setConfiguration(config);
|
||||
|
||||
// Set CR-Tool, UN-Tool, EX-Tool configurations
|
||||
// Config for CR Tool
|
||||
cornerstoneTools.crTool.setConfiguration(config);
|
||||
|
||||
// Config for EX Tool
|
||||
cornerstoneTools.exTool.setConfiguration(config);
|
||||
|
||||
// Config for UN Tool
|
||||
cornerstoneTools.unTool.setConfiguration(config);
|
||||
|
||||
Template.lesionLocationDialog.events({
|
||||
'change .selectLesionLocation': function(e) {
|
||||
var measurementData = Template.lesionLocationDialog.measurementData;
|
||||
|
||||
@ -43,6 +43,19 @@ Package.onUse(function(api) {
|
||||
api.addFiles('client/compatibility/deleteLesionKeyboardTool.js', 'client', {
|
||||
bare: true
|
||||
});
|
||||
api.addFiles('client/compatibility/crunexTool.js', 'client', {
|
||||
bare: true
|
||||
});
|
||||
api.addFiles('client/compatibility/crTool.js', 'client', {
|
||||
bare: true
|
||||
});
|
||||
api.addFiles('client/compatibility/unTool.js', 'client', {
|
||||
bare: true
|
||||
});
|
||||
api.addFiles('client/compatibility/exTool.js', 'client', {
|
||||
bare: true
|
||||
});
|
||||
|
||||
|
||||
// Trial Criteria data validation (the Meteor package is currently out-of-date)
|
||||
api.addFiles('client/compatibility/validate.js', 'client', {
|
||||
@ -158,7 +171,6 @@ Package.onUse(function(api) {
|
||||
api.addFiles('lib/convertToNonTarget.js', 'client');
|
||||
api.addFiles('lib/setTimepointActiveTool.js', 'client');
|
||||
|
||||
|
||||
api.addFiles('lib/syncMeasurementAndToolData.js', 'client');
|
||||
api.addFiles('lib/syncImageMeasurementAndToolData.js', 'client');
|
||||
api.addFiles('lib/updateRelatedElements.js', 'client');
|
||||
|
||||
@ -16,6 +16,10 @@
|
||||
{{ #if includeHangingProtocolButtons }}
|
||||
{{ >hangingProtocolButtons }}
|
||||
{{ /if }}
|
||||
|
||||
{{ #each btnGroup }}
|
||||
{{ >toolbarGroupButton}}
|
||||
{{ /each }}
|
||||
</div>
|
||||
</div>
|
||||
</template>
|
||||
@ -172,5 +172,11 @@ Template.toolbar.helpers({
|
||||
return this.toolbarOptions.includeHangingProtocolButtons;
|
||||
}
|
||||
return true;
|
||||
},
|
||||
'btnGroup': function() {
|
||||
if (this.toolbarOptions && this.toolbarOptions.btnGroup !== undefined) {
|
||||
return this.toolbarOptions.btnGroup;
|
||||
}
|
||||
return [];
|
||||
}
|
||||
});
|
||||
@ -0,0 +1,12 @@
|
||||
<template name="toolbarGroupButton">
|
||||
<div id="toolbarGroupButton" class="btn-group">
|
||||
<button class="btn btn-secondary btn-sm dropdown-toggle" type="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false" id="{{id}}" title="{{title}}">
|
||||
<i class="{{groupIcon}}"></i>
|
||||
</button>
|
||||
<div class="dropdown-menu">
|
||||
{{#each tools}}
|
||||
<div><a class="dropdown-item" href="#">{{> simpleToolbarButton}}</a></div>
|
||||
{{/each}}
|
||||
</div>
|
||||
</div>
|
||||
</template>
|
||||
@ -0,0 +1,10 @@
|
||||
#toolbarGroupButton
|
||||
.dropdown-menu
|
||||
background-color: black
|
||||
border: solid 1px #333
|
||||
padding: 5px
|
||||
margin-top: 0
|
||||
|
||||
div
|
||||
padding: 5px
|
||||
float: left
|
||||
@ -114,6 +114,11 @@ Package.onUse(function(api) {
|
||||
api.addFiles('client/components/basic/progressDialog/progressDialog.styl', 'client');
|
||||
api.addFiles('client/components/basic/progressDialog/progressDialog.js', 'client');
|
||||
|
||||
api.addFiles('client/components/viewer/toolbarGroupButton/toolbarGroupButton.html', 'client');
|
||||
api.addFiles('client/components/viewer/toolbarGroupButton/toolbarGroupButton.styl', 'client');
|
||||
api.addFiles('client/components/viewer/toolbarGroupButton/toolbarGroupButton.js', 'client');
|
||||
|
||||
|
||||
// Library functions
|
||||
api.addFiles('lib/accountsConfig.js', 'client');
|
||||
api.addFiles('lib/createStacks.js', 'client');
|
||||
|
||||
Loading…
Reference in New Issue
Block a user