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fix(seg): multiframe SEG (#4890)

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Igor Octaviano 2025-03-27 16:52:22 -03:00 committed by GitHub
parent 2acc878f26
commit 892d03fc3c
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12 changed files with 210 additions and 205 deletions
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@ -33,7 +33,7 @@
},
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@ -121,21 +121,21 @@
},
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},
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@ -152,9 +152,9 @@
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@ -166,19 +166,19 @@
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@ -189,16 +189,16 @@
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@ -209,19 +209,19 @@
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@ -232,19 +232,19 @@
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@ -254,19 +254,19 @@
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@ -276,7 +276,7 @@
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@ -284,8 +284,8 @@
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@ -299,7 +299,7 @@
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@ -310,10 +310,10 @@
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@ -324,14 +324,14 @@
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@ -341,14 +341,14 @@
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@ -358,20 +358,20 @@
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@ -384,14 +384,14 @@
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@ -401,14 +401,14 @@
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@ -418,7 +418,7 @@
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@ -428,17 +428,17 @@
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@ -448,19 +448,19 @@
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@ -470,32 +470,32 @@
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@ -504,17 +504,17 @@
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@ -546,19 +546,19 @@
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@ -568,43 +568,43 @@
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"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.138",
"@ohif/extension-default": "3.10.0-beta.138",
"@ohif/extension-dicom-pdf": "3.10.0-beta.138",
"@ohif/extension-dicom-video": "3.10.0-beta.138",
"@ohif/extension-measurement-tracking": "3.10.0-beta.138",
},
},
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"name": "@ohif/app",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
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"@emotion/serialize": "^1.1.3",
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"@ohif/extension-cornerstone": "3.10.0-beta.134",
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.134",
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.134",
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.134",
"@ohif/extension-default": "3.10.0-beta.134",
"@ohif/extension-dicom-microscopy": "3.10.0-beta.134",
"@ohif/extension-dicom-pdf": "3.10.0-beta.134",
"@ohif/extension-dicom-video": "3.10.0-beta.134",
"@ohif/extension-test": "3.10.0-beta.134",
"@ohif/i18n": "3.10.0-beta.134",
"@ohif/mode-basic-dev-mode": "3.10.0-beta.134",
"@ohif/mode-longitudinal": "3.10.0-beta.134",
"@ohif/mode-microscopy": "3.10.0-beta.134",
"@ohif/mode-test": "3.10.0-beta.134",
"@ohif/ui": "3.10.0-beta.134",
"@ohif/ui-next": "3.10.0-beta.134",
"@ohif/core": "3.10.0-beta.138",
"@ohif/extension-cornerstone": "3.10.0-beta.138",
"@ohif/extension-cornerstone-dicom-rt": "3.10.0-beta.138",
"@ohif/extension-cornerstone-dicom-seg": "3.10.0-beta.138",
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.138",
"@ohif/extension-default": "3.10.0-beta.138",
"@ohif/extension-dicom-microscopy": "3.10.0-beta.138",
"@ohif/extension-dicom-pdf": "3.10.0-beta.138",
"@ohif/extension-dicom-video": "3.10.0-beta.138",
"@ohif/extension-test": "3.10.0-beta.138",
"@ohif/i18n": "3.10.0-beta.138",
"@ohif/mode-basic-dev-mode": "3.10.0-beta.138",
"@ohif/mode-longitudinal": "3.10.0-beta.138",
"@ohif/mode-microscopy": "3.10.0-beta.138",
"@ohif/mode-test": "3.10.0-beta.138",
"@ohif/ui": "3.10.0-beta.138",
"@ohif/ui-next": "3.10.0-beta.138",
"@svgr/webpack": "^8.1.0",
"@types/react": "^18.3.3",
"classnames": "^2.3.2",
@ -645,7 +645,7 @@
},
"platform/cli": {
"name": "@ohif/cli",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
"bin": {
"ohif-cli": "src/index.js",
},
@ -669,7 +669,7 @@
},
"platform/core": {
"name": "@ohif/core",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
"dependencies": {
"@babel/runtime": "^7.20.13",
"dcmjs": "*",
@ -694,15 +694,15 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.7.8",
"@ohif/ui": "3.10.0-beta.134",
"@cornerstonejs/dicom-image-loader": "^3.7.16",
"@ohif/ui": "3.10.0-beta.138",
"cornerstone-math": "0.1.9",
"dicom-parser": "^1.8.21",
},
},
"platform/i18n": {
"name": "@ohif/i18n",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
"dependencies": {
"@babel/runtime": "^7.20.13",
"i18next-locize-backend": "^2.0.0",
@ -727,7 +727,7 @@
},
"platform/ui": {
"name": "@ohif/ui",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
"dependencies": {
"@testing-library/react": "^13.1.0",
"browser-detect": "^0.2.28",
@ -787,7 +787,7 @@
},
"platform/ui-next": {
"name": "@ohif/ui-next",
"version": "3.10.0-beta.134",
"version": "3.10.0-beta.138",
"dependencies": {
"@radix-ui/react-accordion": "^1.2.0",
"@radix-ui/react-checkbox": "^1.1.1",
@ -1095,7 +1095,7 @@
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"@cornerstonejs/calculate-suv": ["@cornerstonejs/calculate-suv@1.1.0", "", {}, "sha512-Q9XraiDJif9aMFArD2iEuDO/HXbcRVCqB7KfaHgDrdTTjgDFovS91Psbdim7crypRSvE6dh/+HKeFNHdvNkA6w=="],
@ -1107,15 +1107,15 @@
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4
extensions/cornerstone-dicom-pmap/package.json
View File

@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}

4
extensions/cornerstone-dicom-seg/package.json
View File

@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}

9
extensions/cornerstone-dicom-seg/src/getSopClassHandlerModule.ts
View File

@ -177,8 +177,13 @@ async function _loadSegments({
throw new Error('referencedDisplaySet is missing for SEG');
}
const { instances: images } = referencedDisplaySet;
const imageIds = images.map(({ imageId }) => imageId);
let { imageIds } = referencedDisplaySet;
if (!imageIds) {
// try images
const { images } = referencedDisplaySet;
imageIds = images.map(image => image.imageId);
}
// Todo: what should be defaults here
const tolerance = 0.001;

6
extensions/cornerstone-dicom-sr/package.json
View File

@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"classnames": "^2.3.2"
}
}

4
extensions/cornerstone-dynamic-volume/package.json
View File

@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"classnames": "^2.3.2"
}
}

12
extensions/cornerstone/package.json
View File

@ -38,7 +38,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.7.8",
"@cornerstonejs/dicom-image-loader": "^3.7.16",
"@ohif/core": "3.10.0-beta.138",
"@ohif/ui": "3.10.0-beta.138",
"dcmjs": "*",
@ -51,11 +51,11 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.7.8",
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/labelmap-interpolation": "^3.7.8",
"@cornerstonejs/polymorphic-segmentation": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/adapters": "^3.7.16",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/labelmap-interpolation": "^3.7.16",
"@cornerstonejs/polymorphic-segmentation": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
"@kitware/vtk.js": "32.12.0",
"html2canvas": "^1.4.1",

2
extensions/cornerstone/src/services/SegmentationService/SegmentationService.ts
View File

@ -564,7 +564,7 @@ class SegmentationService extends PubSubService {
const referencedImageIdsWithGeometry = Array.from(structureSet.ReferencedSOPInstanceUIDsSet);
const referencedImageIds = referencedDisplaySet.instances.map(image => image.imageId);
const referencedImageIds = referencedDisplaySet.imageIds;
// find the first image id that contains a referenced SOP instance UID
const firstSegmentedSliceImageId = referencedImageIds.find(imageId =>
referencedImageIdsWithGeometry.some(referencedId => imageId.includes(referencedId))

4
extensions/measurement-tracking/package.json
View File

@ -32,8 +32,8 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@cornerstonejs/core": "^3.7.8",
"@cornerstonejs/tools": "^3.7.8",
"@cornerstonejs/core": "^3.7.16",
"@cornerstonejs/tools": "^3.7.16",
"@ohif/core": "3.10.0-beta.138",
"@ohif/extension-cornerstone-dicom-sr": "3.10.0-beta.138",
"@ohif/extension-default": "3.10.0-beta.138",

2
platform/app/package.json
View File

@ -54,7 +54,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.7.8",
"@cornerstonejs/dicom-image-loader": "^3.7.16",
"@emotion/serialize": "^1.1.3",
"@ohif/core": "3.10.0-beta.138",
"@ohif/extension-cornerstone": "3.10.0-beta.138",

2
platform/core/package.json
View File

@ -37,7 +37,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.7.8",
"@cornerstonejs/dicom-image-loader": "^3.7.16",
"@ohif/ui": "3.10.0-beta.138",
"cornerstone-math": "0.1.9",
"dicom-parser": "^1.8.21"

48
yarn.lock
View File

@ -1393,10 +1393,10 @@
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"@cornerstonejs/adapters@^3.7.5":
version "3.7.5"
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-3.7.5.tgz#d5199f8aef9f9ba176183f9d123b3a0e32622813"
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"@cornerstonejs/adapters@^3.7.16":
version "3.7.16"
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-3.7.16.tgz#4ac66230ffba5b527abf4ba58c8b10ef46643c45"
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dependencies:
"@babel/runtime-corejs2" "^7.17.8"
buffer "^6.0.3"
@ -1429,20 +1429,20 @@
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integrity sha512-MZCUy8VG0VG5Nl1l58+g+kH3LujAzLYTfJqkwpWI2gjSrGXnP6lgwyy4GmPRZWVoS40/B1LDNALK905cNWm+sg==
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version "3.7.5"
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-3.7.5.tgz#16572c18c4cdbf0ffeb6f39675025263ce2099bf"
integrity sha512-AMzZrl4nTTcoZejI3qomi5f9LNPr8QkHGconRnNe7aEjuUHUiT9uwX3ieoltJ2IDNmmqhK3wVzJ19EKVqfuESQ==
"@cornerstonejs/core@^3.7.16":
version "3.7.16"
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-3.7.16.tgz#7b4a1ab6a726482ddc380eee15299ec1f9461ad5"
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dependencies:
"@kitware/vtk.js" "32.12.1"
comlink "^4.4.1"
gl-matrix "^3.4.3"
loglevel "^1.9.2"
"@cornerstonejs/dicom-image-loader@^3.7.5":
version "3.7.5"
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-3.7.5.tgz#ad010a5c066f4ae4c118c2ce52625d7ee3ad665e"
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dependencies:
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"@cornerstonejs/codec-libjpeg-turbo-8bit" "^1.2.2"
@ -1454,25 +1454,25 @@
pako "^2.0.4"
uuid "^9.0.0"
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dependencies:
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itk-wasm "1.0.0-b.165"
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dependencies:
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comlink "^4.4.1"