feat(auth): Add Authorization Code Flow and new Keycloak recipes with new video tutorials (#4234)

Co-authored-by: Alireza <ar.sedghi@gmail.com>
This commit is contained in:
Ibrahim 2024-07-09 14:33:37 -04:00 committed by GitHub
parent 998302eb85
commit aefa6d94df
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81 changed files with 6525 additions and 471 deletions

2
.gitignore vendored
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@ -43,7 +43,7 @@ videos/
# autogenerated files
platform/app/src/pluginImports.js
/Viewers.iml
platform/app/.recipes/Nginx-Dcm4Che/dcm4che/dcm4che-arc/*
platform/app/.recipes/Nginx-Dcm4Chee/logs/*
platform/app/.recipes/OpenResty-Orthanc/logs/*
.vercel

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logs/*
volumes/*
config/letsencrypt/*
config/certbot/*
!config/letsencrypt/.gitkeep
!config/certbot/.gitkeep

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#!/bin/sh
# Start oauth2-proxy
oauth2-proxy --config=/etc/oauth2-proxy/oauth2-proxy.cfg &
# Start nginx
nginx -g "daemon off;"

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worker_processes auto;
error_log /var/logs/nginx/error.log debug;
pid /var/run/nginx.pid;
events {
worker_connections 1024;
use epoll;
multi_accept on;
}
http {
include '/etc/nginx/mime.types';
default_type application/octet-stream;
keepalive_timeout 65;
keepalive_requests 100000;
tcp_nopush on;
tcp_nodelay on;
proxy_buffers 16 16k;
proxy_buffer_size 32k;
proxy_busy_buffers_size 64k;
proxy_max_temp_file_size 128k;
gzip on;
gzip_disable "msie6";
gzip_types text/plain text/css application/json application/javascript text/xml application/xml application/xml+rss text/javascript image/svg+xml;
server {
listen 80;
server_name YOUR_DOMAIN;
client_max_body_size 0;
location /.well-known/acme-challenge/ {
root /var/www/certbot;
}
location / {
return 301 https://$host$request_uri;
}
}
server {
listen 443 ssl;
server_name YOUR_DOMAIN;
ssl_certificate /etc/letsencrypt/live/YOUR_DOMAIN/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/YOUR_DOMAIN/privkey.pem;
root /var/www/html;
gzip on;
gzip_types text/css application/javascript application/json image/svg+xml;
gzip_comp_level 9;
etag on;
location /sw.js {
add_header Cache-Control "no-cache";
proxy_cache_bypass $http_pragma;
proxy_cache_revalidate on;
expires off;
access_log off;
}
location /oauth2 {
expires -1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_set_header X-Auth-Request-Redirect $request_uri;
proxy_pass http://localhost:4180$uri$is_args$args;
}
location /oauth2/callback {
proxy_pass http://localhost:4180;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
location /oauth2/sign_out {
expires -1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_set_header X-Auth-Request-Redirect /oauth2/sign_in;
proxy_pass http://localhost:4180;
}
location /pacs/ {
auth_request /oauth2/auth;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
expires 0;
add_header Cache-Control private;
add_header 'Access-Control-Allow-Origin' '*' always;
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS' always;
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept' always;
if ($request_method = OPTIONS) {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept';
add_header 'Access-Control-Max-Age' 1728000;
add_header 'Content-Type' 'text/plain; charset=utf-8';
add_header 'Content-Length' 0;
return 204;
}
rewrite ^/pacs/(.*) /dcm4chee-arc/aets/DCM4CHEE/rs/$1 break;
proxy_pass http://arc:8080;
}
location /pacs-admin {
return 301 /pacs-admin/;
}
# Redirect /pacs-admin to /dcm4chee-arc/ui2/
location = /pacs-admin {
return 301 $scheme://$host/dcm4chee-arc/ui2/;
}
# Handle /pacs-admin/ requests
location /pacs-admin/ {
return 301 $scheme://$host/dcm4chee-arc/ui2/;
}
# Proxy pass for /dcm4chee-arc/ui2/
location /dcm4chee-arc/ui2/ {
error_page 401 = /oauth2/sign_in?rd=$scheme://$host$request_uri;
auth_request /oauth2/auth?allowed_groups=pacsadmin;
auth_request_set $user $upstream_http_x_auth_request_user;
auth_request_set $token $upstream_http_x_auth_request_access_token;
auth_request_set $auth_cookie $upstream_http_set_cookie;
proxy_set_header X-User $user;
proxy_set_header X-Access-Token $token;
add_header Set-Cookie $auth_cookie;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
expires 0;
add_header Cache-Control private;
add_header 'Access-Control-Allow-Origin' '*' always;
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS' always;
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept' always;
if ($request_method = OPTIONS) {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept';
add_header 'Access-Control-Max-Age' 1728000;
add_header 'Content-Type' 'text/plain; charset=utf-8';
add_header 'Content-Length' 0;
return 204;
}
proxy_pass http://arc:8080;
}
# Proxy pass for other /dcm4chee-arc/ requests
location /dcm4chee-arc/ {
proxy_pass http://arc:8080;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
location /pacs {
return 301 /pacs/;
}
location /ohif-viewer/ {
expires -1;
error_page 401 = /oauth2/sign_in?rd=$scheme://$host$request_uri;
auth_request /oauth2/auth;
auth_request_set $user $upstream_http_x_auth_request_user;
auth_request_set $token $upstream_http_x_auth_request_access_token;
auth_request_set $auth_cookie $upstream_http_set_cookie;
proxy_set_header X-User $user;
proxy_set_header X-Access-Token $token;
add_header Set-Cookie $auth_cookie;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Server $host;
proxy_set_header X-Forwarded-Proto $scheme;
index index.html;
try_files $uri $uri/ /index.html;
}
location /ohif-viewer {
return 301 /ohif-viewer/;
}
location = / {
return 301 /ohif-viewer/;
}
location / {
add_header Cache-Control "no-store, no-cache, must-revalidate";
add_header 'Cross-Origin-Opener-Policy' 'same-origin' always;
add_header 'Cross-Origin-Embedder-Policy' 'require-corp' always;
}
location /keycloak/ {
proxy_pass http://keycloak:8080/;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
location /keycloak {
return 301 /keycloak/;
}
}
}

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http_address="0.0.0.0:4180"
cookie_secret="GENERATEACOOKIESECRET----------------------="
email_domains=["*"]
cookie_secure="false"
cookie_expire="9m30s"
cookie_refresh="5m"
client_secret="2Xtlde7aozdkzzYHdIxQNfPDr0wNPTgg"
client_id="ohif_viewer"
redirect_url="http://YOUR_DOMAIN/oauth2/callback"
ssl_insecure_skip_verify = true
insecure_oidc_allow_unverified_email = true
pass_access_token = true
provider="keycloak-oidc"
provider_display_name="Keycloak"
user_id_claim="oid"
oidc_email_claim="sub"
scope="openid"
pass_host_header=true
code_challenge_method="S256"
oidc_issuer_url="http://YOUR_DOMAIN/keycloak/realms/ohif"
insecure_oidc_skip_issuer_verification = true

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version: '3.8'
services:
ldap:
image: dcm4che/slapd-dcm4chee:2.6.3-29.0
logging:
driver: json-file
options:
max-size: "10m"
ports:
- "389:389"
env_file: docker-compose.env
volumes:
- ~/dcm4chee-arc/ldap:/var/lib/ldap
- ~/dcm4chee-arc/slapd.d:/etc/ldap/slapd.d
db:
image: dcm4che/postgres-dcm4chee:14.5-29
logging:
driver: json-file
options:
max-size: "10m"
ports:
- "5432:5432"
env_file: docker-compose.env
volumes:
- /etc/localtime:/etc/localtime:ro
- /etc/timezone:/etc/timezone:ro
- ~/dcm4chee-arc/db:/var/lib/postgresql/data
arc:
image: dcm4che/dcm4chee-arc-psql:5.29.0
logging:
driver: json-file
options:
max-size: "10m"
ports:
- "8080:8080"
- "8443:8443"
- "9990:9990"
- "9993:9993"
- "11112:11112"
- "2762:2762"
- "2575:2575"
- "12575:12575"
env_file: docker-compose.env
environment:
WILDFLY_CHOWN: /opt/wildfly/standalone /storage
WILDFLY_WAIT_FOR: ldap:389 db:5432
depends_on:
- ldap
- db
volumes:
- /etc/localtime:/etc/localtime:ro
- /etc/timezone:/etc/timezone:ro
- ~/dcm4chee-arc/wildfly:/opt/wildfly/standalone
- ~/dcm4chee-arc/storage:/storage
ohif_viewer:
build:
context: ./../../../../
dockerfile: ./platform/app/.recipes/Nginx-Dcm4chee-Keycloak/dockerfile
image: webapp:latest
container_name: webapp
ports:
- '443:443' # SSL
- '80:80' # Web
depends_on:
keycloak:
condition: service_healthy
restart: on-failure
networks:
- default
extra_hosts:
- 'host.docker.internal:host-gateway'
environment:
- OAUTH2_PROXY_SKIP_PROVIDER_BUTTON=true
volumes:
- ./config/nginx.conf:/etc/nginx/nginx.conf
- ./config/oauth2-proxy.cfg:/etc/oauth2-proxy/oauth2-proxy.cfg
- ./config/letsencrypt:/etc/letsencrypt
- ./config/certbot:/var/www/certbot
keycloak:
image: quay.io/keycloak/keycloak:24.0.5
command: 'start-dev --import-realm'
hostname: keycloak
container_name: keycloak
volumes:
- ./config/ohif-keycloak-realm.json:/opt/keycloak/data/import/ohif-keycloak-realm.json
environment:
KC_DB_URL_HOST: postgres
KC_DB: postgres
KC_DB_URL: 'jdbc:postgresql://postgres:5432/keycloak'
KC_DB_SCHEMA: public
KC_DB_USERNAME: keycloak
KC_DB_PASSWORD: password
KC_HOSTNAME_ADMIN_URL: http://YOUR_DOMAIN/keycloak/
KC_HOSTNAME_URL: http://YOUR_DOMAIN/keycloak/
KC_HOSTNAME_STRICT_BACKCHANNEL: true
KC_HOSTNAME_STRICT_HTTPS: false
KC_HTTP_ENABLED: true
KEYCLOAK_ADMIN: admin
KEYCLOAK_ADMIN_PASSWORD: admin
KC_HEALTH_ENABLED: true
KC_METRICS_ENABLED: true
KC_PROXY: edge
KC_PROXY_HEADERS: xforwarded
KEYCLOAK_JDBC_PARAMS: connectTimeout=40000
KC_LOG_LEVEL: INFO
KC_HOSTNAME_DEBUG: true
PROXY_ADDRESS_FORWARDING: true
ports:
- 8081:8080
depends_on:
- postgres
restart: unless-stopped
networks:
- default
extra_hosts:
- 'host.docker.internal:host-gateway'
healthcheck:
test:
[
"CMD-SHELL",
"exec 3<>/dev/tcp/YOUR_DOMAIN/8080;echo -e \"GET /health/ready HTTP/1.1\r\nhost: http://localhost\r\nConnection: close\r\n\r\n\" >&3;grep \"HTTP/1.1 200 OK\" <&3"
]
interval: 1s
timeout: 5s
retries: 10
start_period: 60s
postgres:
image: postgres:15
hostname: postgres
container_name: postgres
volumes:
- postgres_data:/var/lib/postgresql/data
environment:
POSTGRES_DB: keycloak
POSTGRES_USER: keycloak
POSTGRES_PASSWORD: password
restart: unless-stopped
networks:
- default
certbot:
image: certbot/certbot
container_name: certbot
volumes:
- ./config/letsencrypt:/etc/letsencrypt
- ./config/certbot:/var/www/certbot
entrypoint: /bin/sh -c "trap exit TERM; while :; do certbot renew; sleep 12h & wait $${!}; done;"
volumes:
postgres_data:
driver: local
networks:
default:
driver: bridge

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# Stage 1: Build the application
FROM node:18.16.1-slim as builder
# Setup the working directory
RUN mkdir /usr/src/app
WORKDIR /usr/src/app
# Install dependencies
RUN apt-get update && apt-get install -y build-essential python3
# Copy the entire project
COPY ./ /usr/src/app/
# Install node dependencies
RUN yarn config set workspaces-experimental true
RUN yarn install
# Set the environment for the build
ENV APP_CONFIG=config/docker-nginx-dcm4chee-keycloak.js
# Build the application
RUN yarn run build
# Stage 2: Setup the NGINX environment with OAuth2 Proxy
FROM nginx:alpine
# Install dependencies for oauth2-proxy
RUN apk add --no-cache curl
# Create necessary directories
RUN mkdir -p /var/logs/nginx /var/www/html /etc/oauth2-proxy
# Download and install oauth2-proxy
RUN curl -L https://github.com/oauth2-proxy/oauth2-proxy/releases/download/v7.4.0/oauth2-proxy-v7.4.0.linux-amd64.tar.gz -o oauth2-proxy.tar.gz && \
tar -xvzf oauth2-proxy.tar.gz && \
mv oauth2-proxy-v7.4.0.linux-amd64/oauth2-proxy /usr/local/bin/ && \
rm -rf oauth2-proxy-v7.4.0.linux-amd64 oauth2-proxy.tar.gz
# Copy the built application
COPY --from=builder /usr/src/app/platform/app/dist /var/www/html
# Copy the entrypoint script
COPY ./platform/app/.recipes/Nginx-Dcm4chee-Keycloak/config/entrypoint.sh /entrypoint.sh
# Expose necessary ports
EXPOSE 80 443 4180
# Set the entrypoint script as the entrypoint
RUN chmod +x /entrypoint.sh
ENTRYPOINT ["/entrypoint.sh"]

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America/New_York

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worker_processes auto;
error_log /var/logs/nginx/error.log debug;
pid /var/run/nginx.pid;
events {
worker_connections 1024;
use epoll;
multi_accept on;
}
http {
include /etc/nginx/mime.types;
default_type application/octet-stream;
log_format main '$remote_addr - $remote_user [$time_local] "$request" '
'$status $body_bytes_sent "$http_referer" '
'"$http_user_agent" "$http_x_forwarded_for"';
access_log /var/logs/nginx/access.log main;
sendfile on;
tcp_nopush on;
tcp_nodelay on;
keepalive_timeout 65;
types_hash_max_size 2048;
gzip on;
gzip_disable "msie6";
gzip_types text/plain text/css application/json application/javascript text/xml application/xml application/xml+rss text/javascript image/svg+xml;
server {
listen 80 default_server;
listen [::]:80 default_server;
server_name _;
client_max_body_size 0;
# Handle /pacs requests and rewrite them to the correct dcm4chee-arc UI path
# This allows accessing the dcm4chee-arc UI through the /pacs URL
location /pacs {
rewrite ^/pacs(.*)$ /dcm4chee-arc/ui2$1 break;
proxy_pass http://arc:8080;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_buffering off;
proxy_request_buffering off;
expires 0;
add_header Cache-Control private;
}
# Proxy all dcm4chee-arc requests
# This block handles all API requests and general dcm4chee-arc paths
location /dcm4chee-arc/ {
proxy_pass http://arc:8080/dcm4chee-arc/;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_buffering off;
proxy_request_buffering off;
}
location /sw.js {
add_header Cache-Control "no-cache";
proxy_cache_bypass $http_pragma;
proxy_cache_revalidate on;
expires off;
access_log off;
}
location / {
root /var/www/html;
index index.html;
try_files $uri $uri/ /index.html;
add_header Cache-Control "no-store, no-cache, must-revalidate";
add_header Cross-Origin-Opener-Policy 'same-origin' always;
add_header Cross-Origin-Embedder-Policy 'require-corp' always;
}
}
}

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STORAGE_DIR=/storage/fs1
POSTGRES_DB=pacsdb
POSTGRES_USER=pacs
POSTGRES_PASSWORD=pacs

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@ -1,50 +1,45 @@
version: '3.5'
services:
ldap:
image: dcm4che/slapd-dcm4chee:2.4.44-15.0
image: dcm4che/slapd-dcm4chee:2.6.3-29.0
logging:
driver: json-file
options:
max-size: '10m'
max-size: "10m"
ports:
- '389:389'
env_file: ./dcm4che/docker-compose-dcm4che.env
- "389:389"
env_file: docker-compose.env
volumes:
- ./dcm4che/etc/localtime:/etc/localtime:ro
- ./dcm4che/etc/timezone:/etc/timezone:ro
- ./dcm4che/dcm4che-arc/ldap:/var/lib/ldap
- ./dcm4che/dcm4che-arc/slapd.d:/etc/ldap/slapd.d
networks:
- dcm4che_default
- ~/dcm4chee-arc/ldap:/var/lib/ldap
- ~/dcm4chee-arc/slapd.d:/etc/ldap/slapd.d
db:
image: dcm4che/postgres-dcm4chee:11.1-15
image: dcm4che/postgres-dcm4chee:14.5-29
logging:
driver: json-file
options:
max-size: '10m'
max-size: "10m"
ports:
- '5432:5432'
env_file: ./dcm4che/docker-compose-dcm4che.env
- "5432:5432"
env_file: docker-compose.env
volumes:
- ./dcm4che/etc/localtime:/etc/localtime:ro
- ./dcm4che/etc/timezone:/etc/timezone:ro
- ./dcm4che/dcm4che-arc/db:/var/lib/postgresql/data
networks:
- dcm4che_default
- /etc/localtime:/etc/localtime:ro
- /etc/timezone:/etc/timezone:ro
- ~/dcm4chee-arc/db:/var/lib/postgresql/data
arc:
image: dcm4che/dcm4chee-arc-psql:5.15.0
image: dcm4che/dcm4chee-arc-psql:5.29.0
logging:
driver: json-file
options:
max-size: '10m'
max-size: "10m"
ports:
- '8080:8080'
- '8443:8443'
- '9990:9990'
- '11112:11112'
- '2575:2575'
env_file: ./dcm4che/docker-compose-dcm4che.env
- "8080:8080"
- "8443:8443"
- "9990:9990"
- "9993:9993"
- "11112:11112"
- "2762:2762"
- "2575:2575"
- "12575:12575"
env_file: docker-compose.env
environment:
WILDFLY_CHOWN: /opt/wildfly/standalone /storage
WILDFLY_WAIT_FOR: ldap:389 db:5432
@ -52,26 +47,27 @@ services:
- ldap
- db
volumes:
- ./dcm4che/etc/localtime:/etc/localtime:ro
- ./dcm4che/etc/timezone:/etc/timezone:ro
- ./dcm4che/dcm4che-arc/wildfly:/opt/wildfly/standalone
- ./dcm4che/dcm4che-arc/storage:/storage
networks:
- dcm4che_default
viewer:
container_name: ohif-viewer
- /etc/localtime:/etc/localtime:ro
- /etc/timezone:/etc/timezone:ro
- ~/dcm4chee-arc/wildfly:/opt/wildfly/standalone
- ~/dcm4chee-arc/storage:/storage
ohif_viewer:
build:
context: ../
dockerfile: Dockerfile
# Project root
context: ./../../../../
# Relative to context
dockerfile: ./platform/app/.recipes/Nginx-Dcm4chee/dockerfile
image: webapp:latest
container_name: ohif_dcm4chee
volumes:
# Nginx config
- ./config/nginx.conf:/etc/nginx/nginx.conf
# Logs
- ./logs/nginx:/var/logs/nginx
# Let's Encrypt
# - letsencrypt_certificates:/etc/letsencrypt
# - letsencrypt_challenges:/var/www/letsencrypt
ports:
- '80:80'
# depends_on:
# - orthanc
environment:
- NODE_ENV=production
- APP_CONFIG=config/local_dcm4chee
restart: always
networks:
- dcm4che_default
networks: dcm4che_default:
- '443:443' # SSL
- '80:80' # Web
restart: on-failure

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# Stage 1: Build the application
FROM node:18.16.1-slim as builder
# Setup the working directory
RUN mkdir /usr/src/app
WORKDIR /usr/src/app
# Install dependencies
# apt-get update is combined with apt-get install to avoid using outdated packages
RUN apt-get update && apt-get install -y build-essential python3
# Copy package.json and other dependency-related files first
# Assuming your package.json and yarn.lock or similar are located in the project root
COPY ./ /usr/src/app/
# Install node dependencies
RUN yarn config set workspaces-experimental true
RUN yarn install
# Copy the rest of the application code
# set QUICK_BUILD to true to make the build faster for dev
ENV APP_CONFIG=config/docker-nginx-dcm4chee.js
# Build the application
RUN yarn run build
# # Stage 2: Bundle the built application into a Docker container which runs NGINX using Alpine Linux
FROM nginx:alpine
# # Create directories for logs and html content if they don't already exist
RUN mkdir -p /var/log/nginx /var/www/html
# # Copy build output to serve static files
COPY --from=builder /usr/src/app/platform/app/dist /var/www/html
# # Expose HTTP and HTTPS ports
EXPOSE 80 443
# # Start NGINX
CMD ["nginx", "-g", "daemon off;"]

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@ -1,49 +0,0 @@
events {
worker_connections 4096; ## Default: 1024
}
http {
server {
listen 80 default_server;
server_name localhost;
#
# Wide-open CORS config for nginx
#
location / {
if ($request_method = 'OPTIONS') {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
#
# Custom headers and headers various browsers *should* be OK with but aren't
#
add_header 'Access-Control-Allow-Headers' 'DNT,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Range';
#
# Tell client that this pre-flight info is valid for 20 days
#
add_header 'Access-Control-Allow-Headers' 'Authorization';
add_header 'Access-Control-Allow-Credentials' true;
add_header 'Access-Control-Max-Age' 1728000;
add_header 'Content-Length' 0;
return 204;
}
if ($request_method = 'POST') {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'DNT,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Range';
add_header 'Access-Control-Expose-Headers' 'Content-Length,Content-Range';
}
if ($request_method = 'GET') {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'DNT,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Range';
add_header 'Access-Control-Expose-Headers' 'Content-Length,Content-Range';
add_header 'Access-Control-Allow-Headers' 'Authorization';
add_header 'Access-Control-Allow-Credentials' true;
}
proxy_pass http://orthanc:8042;
}
}
}

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@ -0,0 +1,6 @@
logs/*
volumes/*
config/letsencrypt/*
config/certbot/*
!config/letsencrypt/.gitkeep
!config/certbot/.gitkeep

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@ -0,0 +1,7 @@
#!/bin/sh
# Start oauth2-proxy
oauth2-proxy --config=/etc/oauth2-proxy/oauth2-proxy.cfg &
# Start nginx
nginx -g "daemon off;"

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@ -0,0 +1,210 @@
worker_processes 2;
error_log /var/logs/nginx/mydomain.error.log;
pid /var/run/nginx.pid;
include /usr/share/nginx/modules/*.conf;
events {
worker_connections 1024;
use epoll;
multi_accept on;
}
http {
include '/etc/nginx/mime.types';
default_type application/octet-stream;
keepalive_timeout 65;
keepalive_requests 100000;
tcp_nopush on;
tcp_nodelay on;
proxy_buffers 16 16k;
proxy_buffer_size 32k;
proxy_busy_buffers_size 64k;
proxy_max_temp_file_size 128k;
server {
listen 80;
server_name YOUR_DOMAIN;
location /.well-known/acme-challenge/ {
root /var/www/certbot;
}
location / {
return 301 https://$host$request_uri;
}
}
server {
listen 443 ssl;
server_name YOUR_DOMAIN;
ssl_certificate /etc/letsencrypt/live/ohifviewer.duckdns.org/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/ohifviewer.duckdns.org/privkey.pem;
root /var/www/html;
gzip on;
gzip_types text/css application/javascript application/json image/svg+xml;
gzip_comp_level 9;
etag on;
location /sw.js {
add_header Cache-Control "no-cache";
proxy_cache_bypass $http_pragma;
proxy_cache_revalidate on;
expires off;
access_log off;
}
location /oauth2 {
expires -1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_set_header X-Auth-Request-Redirect $request_uri;
proxy_pass http://localhost:4180$uri$is_args$args;
}
location /oauth2/callback {
proxy_pass http://localhost:4180;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
location /oauth2/sign_out {
expires -1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_set_header X-Auth-Request-Redirect /oauth2/sign_in;
proxy_pass http://localhost:4180;
}
location /pacs-admin/ {
error_page 401 = /oauth2/sign_in?rd=$scheme://$host$request_uri;
auth_request /oauth2/auth?allowed_groups=pacsadmin;
auth_request_set $user $upstream_http_x_auth_request_user;
auth_request_set $token $upstream_http_x_auth_request_access_token;
auth_request_set $auth_cookie $upstream_http_set_cookie;
proxy_set_header X-User $user;
proxy_set_header X-Access-Token $token;
add_header Set-Cookie $auth_cookie;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
expires 0;
add_header Cache-Control private;
add_header 'Access-Control-Allow-Origin' '*' always;
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS' always;
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept' always;
if ($request_method = OPTIONS) {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept';
add_header 'Access-Control-Max-Age' 1728000;
add_header 'Content-Type' 'text/plain; charset=utf-8';
add_header 'Content-Length' 0;
return 204;
}
proxy_pass http://orthanc:8042/;
}
location /pacs-admin {
return 301 /pacs-admin/;
}
location /pacs/ {
auth_request /oauth2/auth;
proxy_http_version 1.1;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
expires 0;
add_header Cache-Control private;
add_header 'Access-Control-Allow-Origin' '*' always;
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS' always;
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept' always;
if ($request_method = OPTIONS) {
add_header 'Access-Control-Allow-Origin' '*';
add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
add_header 'Access-Control-Allow-Headers' 'Authorization, Origin, X-Requested-With, Content-Type, Accept';
add_header 'Access-Control-Max-Age' 1728000;
add_header 'Content-Type' 'text/plain; charset=utf-8';
add_header 'Content-Length' 0;
return 204;
}
proxy_pass http://orthanc:8042/dicom-web/;
}
location /pacs {
return 301 /pacs/;
}
location /ohif-viewer/ {
expires -1;
error_page 401 = /oauth2/sign_in?rd=$scheme://$host$request_uri;
auth_request /oauth2/auth;
auth_request_set $user $upstream_http_x_auth_request_user;
auth_request_set $token $upstream_http_x_auth_request_access_token;
auth_request_set $auth_cookie $upstream_http_set_cookie;
proxy_set_header X-User $user;
proxy_set_header X-Access-Token $token;
add_header Set-Cookie $auth_cookie;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Server $host;
proxy_set_header X-Forwarded-Proto $scheme;
index index.html;
try_files $uri $uri/ /index.html;
}
location /ohif-viewer {
return 301 /ohif-viewer/;
}
location = / {
return 301 /ohif-viewer/;
}
location / {
add_header Cache-Control "no-store, no-cache, must-revalidate";
add_header 'Cross-Origin-Opener-Policy' 'same-origin' always;
add_header 'Cross-Origin-Embedder-Policy' 'require-corp' always;
}
location /keycloak/ {
proxy_pass http://keycloak:8080/;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
location /keycloak {
return 301 /keycloak/;
}
}
}

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@ -0,0 +1,22 @@
http_address="0.0.0.0:4180"
cookie_secret="GENERATEACOOKIESECRET----------------------="
email_domains=["*"]
cookie_secure="false"
cookie_expire="9m30s"
cookie_refresh="5m"
client_secret="2Xtlde7aozdkzzYHdIxQNfPDr0wNPTgg"
client_id="ohif_viewer"
redirect_url="http://YOUR_DOMAIN/oauth2/callback"
ssl_insecure_skip_verify = true
insecure_oidc_allow_unverified_email = true
pass_access_token = true
provider="keycloak-oidc"
provider_display_name="Keycloak"
user_id_claim="oid"
oidc_email_claim="sub"
scope="openid"
pass_host_header=true
code_challenge_method="S256"
oidc_issuer_url="http://YOUR_DOMAIN/keycloak/realms/ohif"
insecure_oidc_skip_issuer_verification = true

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@ -0,0 +1,126 @@
services:
ohif_viewer:
build:
context: ./../../../../
dockerfile: ./platform/app/.recipes/Nginx-Orthanc-Keycloak/dockerfile
image: webapp:latest
container_name: webapp
ports:
- '443:443' # SSL
- '80:80' # Web
depends_on:
keycloak:
condition: service_healthy
restart: on-failure
networks:
- default
extra_hosts:
- 'host.docker.internal:host-gateway'
environment:
- OAUTH2_PROXY_SKIP_PROVIDER_BUTTON=true
volumes:
# - ../../app/dist /var/www/html
- ./config/nginx.conf:/etc/nginx/nginx.conf
- ./config/oauth2-proxy.cfg:/etc/oauth2-proxy/oauth2-proxy.cfg
- ./config/letsencrypt:/etc/letsencrypt
- ./config/certbot:/var/www/certbot
orthanc:
image: jodogne/orthanc-plugins
hostname: orthanc
container_name: orthanc
volumes:
- ./config/orthanc.json:/etc/orthanc/orthanc.json:ro
- ./volumes/orthanc-db/:/var/lib/orthanc/db/
restart: unless-stopped
networks:
- default
keycloak:
image: quay.io/keycloak/keycloak:24.0.5
command: 'start-dev --import-realm'
hostname: keycloak
container_name: keycloak
volumes:
- ./config/ohif-keycloak-realm.json:/opt/keycloak/data/import/ohif-keycloak-realm.json
environment:
# Database
KC_DB_URL_HOST: postgres
KC_DB: postgres
KC_DB_URL: 'jdbc:postgresql://postgres:5432/keycloak'
KC_DB_SCHEMA: public
KC_DB_USERNAME: keycloak
KC_DB_PASSWORD: password
KC_HOSTNAME_ADMIN_URL: http://YOUR_DOMAIN/keycloak/
KC_HOSTNAME_URL: http://YOUR_DOMAIN/keycloak/
KC_HOSTNAME_STRICT_BACKCHANNEL: true
KC_HOSTNAME_STRICT_HTTPS: false
KC_HTTP_ENABLED: true
KEYCLOAK_ADMIN: admin
KEYCLOAK_ADMIN_PASSWORD: admin
KC_HEALTH_ENABLED: true
KC_METRICS_ENABLED: true
KC_PROXY: edge
KC_PROXY_HEADERS: xforwarded
KEYCLOAK_JDBC_PARAMS: connectTimeout=40000
KC_LOG_LEVEL: INFO
KC_HOSTNAME_DEBUG: true
# added later
PROXY_ADDRESS_FORWARDING: true
ports:
- 8080:8080
depends_on:
- postgres
restart: unless-stopped
networks:
- default
extra_hosts:
- 'host.docker.internal:host-gateway'
healthcheck:
test: [
'CMD-SHELL',
"exec 3<>/dev/tcp/YOUR_DOMAIN/8080;echo -e \"GET /health/ready HTTP/1.1\r
host: http://localhost\r
Connection: close\r
\r
\" >&3;grep \"HTTP/1.1 200 OK\" <&3",
]
interval: 1s
timeout: 5s
retries: 10
start_period: 60s
postgres:
image: postgres:15
hostname: postgres
container_name: postgres
volumes:
- postgres_data:/var/lib/postgresql/data
environment:
POSTGRES_DB: keycloak
POSTGRES_USER: keycloak
POSTGRES_PASSWORD: password
restart: unless-stopped
networks:
- default
certbot:
image: certbot/certbot
container_name: certbot
volumes:
- ./config/letsencrypt:/etc/letsencrypt
- ./config/certbot:/var/www/certbot
entrypoint:
/bin/sh -c "trap exit TERM; while :; do certbot renew; sleep 12h & wait $${!}; done;"
volumes:
postgres_data:
driver: local
networks:
default:
driver: bridge

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@ -0,0 +1,57 @@
# Stage 1: Build the application
FROM node:18.16.1-slim as builder
# Setup the working directory
RUN mkdir /usr/src/app
WORKDIR /usr/src/app
# Install dependencies
# apt-get update is combined with apt-get install to avoid using outdated packages
RUN apt-get update && apt-get install -y build-essential python3
# Copy package.json and other dependency-related files first
# Assuming your package.json and yarn.lock or similar are located in the project root
# Todo: this probably can get improved by copying
# only the package json files and running yarn install before
# copying the rest of the files but having a monorepo setup
# makes this a bit more complicated, i wasn't able to get it working
COPY ./ /usr/src/app/
# Install node dependencies
RUN yarn config set workspaces-experimental true
RUN yarn install
# Copy the rest of the application code
# set QUICK_BUILD to true to make the build faster for dev
ENV APP_CONFIG=config/docker-nginx-orthanc-keycloak.js
# Build the application
RUN yarn run build
# Use nginx as the base image
FROM nginx:alpine
# Install dependencies for oauth2-proxy
RUN apk add --no-cache curl
# Create necessary directories
RUN mkdir -p /var/logs/nginx /var/www/html /etc/oauth2-proxy
# Download and install oauth2-proxy
RUN curl -L https://github.com/oauth2-proxy/oauth2-proxy/releases/download/v7.4.0/oauth2-proxy-v7.4.0.linux-amd64.tar.gz -o oauth2-proxy.tar.gz && \
tar -xvzf oauth2-proxy.tar.gz && \
mv oauth2-proxy-v7.4.0.linux-amd64/oauth2-proxy /usr/local/bin/ && \
rm -rf oauth2-proxy-v7.4.0.linux-amd64 oauth2-proxy.tar.gz
COPY --from=builder /usr/src/app/platform/app/dist /var/www/html
# Copy the entrypoint script
COPY ./platform/app/.recipes/Nginx-Orthanc-Keycloak/config/entrypoint.sh /entrypoint.sh
# Expose necessary ports
EXPOSE 80 443 4180
# Set the entrypoint script as the entrypoint
RUN chmod +x entrypoint.sh
ENTRYPOINT ["/entrypoint.sh"]

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@ -0,0 +1,26 @@
# Docker compose files
# Build
Using docker compose you can build the image with the following command:
```bash
docker-compose build
```
# Run
To run the container use the following command:
```bash
docker-compose up
```
# Routes
http://localhost/ -> OHIF
localhost/pacs -> Orthanc
See [here](../../../docs/docs/deployment/nginx--image-archive.md) for more information about this recipe.

View File

@ -12,20 +12,19 @@ RUN apt-get update && apt-get install -y build-essential python3
# Copy package.json and other dependency-related files first
# Assuming your package.json and yarn.lock or similar are located in the project root
COPY . .
COPY ./ /usr/src/app/
# Install node dependencies
# RUN yarn config set workspaces-experimental true
# RUN yarn install
RUN yarn config set workspaces-experimental true
RUN yarn install
# Copy the rest of the application code
# set QUICK_BUILD to true to make the build faster for dev
ENV APP_CONFIG=config/docker_nginx-orthanc-keycloak.js
ENV APP_CONFIG=config/docker-nginx-orthanc.js
# Build the application
# RUN yarn run build
RUN yarn run build
# # Stage 2: Bundle the built application into a Docker container which runs NGINX using Alpine Linux
FROM nginx:alpine
@ -35,7 +34,7 @@ RUN mkdir -p /var/log/nginx /var/www/html
# # Copy build output to serve static files
# COPY --from=builder /usr/src/app/platform/app/dist /var/www/html
COPY --from=builder /usr/src/app/platform/app/dist /var/www/html
# # Expose HTTP and HTTPS ports
EXPOSE 80 443

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@ -1,5 +0,0 @@
# Docker ENV and ARG Variables
# ----------------------------
# https://vsupalov.com/docker-arg-env-variable-guide/
#
#

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@ -1,5 +0,0 @@
# Docker ENV and ARG Variables
# ----------------------------
# https://vsupalov.com/docker-arg-env-variable-guide/
#
#

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@ -1,53 +0,0 @@
# Docker compose files
This folder contains docker-compose files used to spin up OHIF-Viewer with
different options such as locally or with any PAS you desire to
## Public Server
#### build
`$ docker-compose -f docker-compose-publicserver.yml build`
#### run
`$ docker-compose -f docker-compose-publicserver.yml up -d`
then, access the application at [http://localhost](http://localhost)
## Local Orthanc
### Build
`$ docker-compose -f docker-compose-orthanc.yml build`
### Run
Starts containers and leaves them running in the background.
`$ docker-compose -f docker-compose-orthanc.yml up -d`
then, access the application at [http://localhost](http://localhost)
**remember that you have to access orthanc application and include your studies
there**
## Local Dcm4chee
#### build
`$ docker-compose -f docker-compose-dcm4chee.yml build`
#### run
`$ docker-compose -f docker-compose-dcm4chee.yml up -d`
then, access the application at [http://localhost](http://localhost)
**remember that you have to access dcm4chee application and include your studies
there** You can use the following command to import your studies into dcm4che
`$ docker run -v {YOUR_STUDY_FOLDER}:/tmp --rm --network=docker_dcm4che_default dcm4che/dcm4che-tools:5.14.0 storescu -cDCM4CHEE@arc:11112 /tmp`
**make sure that your Docker network name is docker_dcm4chee_default or change
it to the right one**

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@ -0,0 +1,89 @@
{
"Name": "Orthanc inside Docker",
"StorageDirectory": "/var/lib/orthanc/db",
"IndexDirectory": "/var/lib/orthanc/db",
"StorageCompression": false,
"MaximumStorageSize": 0,
"MaximumPatientCount": 0,
"LuaScripts": [],
"Plugins": ["/usr/share/orthanc/plugins", "/usr/local/share/orthanc/plugins"],
"ConcurrentJobs": 2,
"HttpServerEnabled": true,
"HttpPort": 8042,
"HttpDescribeErrors": true,
"HttpCompressionEnabled": true,
"DicomServerEnabled": true,
"DicomAet": "ORTHANC",
"DicomCheckCalledAet": false,
"DicomPort": 4242,
"DefaultEncoding": "Latin1",
"DeflatedTransferSyntaxAccepted": true,
"JpegTransferSyntaxAccepted": true,
"Jpeg2000TransferSyntaxAccepted": true,
"JpegLosslessTransferSyntaxAccepted": true,
"JpipTransferSyntaxAccepted": true,
"Mpeg2TransferSyntaxAccepted": true,
"RleTransferSyntaxAccepted": true,
"UnknownSopClassAccepted": false,
"DicomScpTimeout": 30,
"RemoteAccessAllowed": true,
"SslEnabled": false,
"SslCertificate": "certificate.pem",
"AuthenticationEnabled": false,
"RegisteredUsers": {
"test": "test"
},
"DicomModalities": {},
"DicomModalitiesInDatabase": false,
"DicomAlwaysAllowEcho": true,
"DicomAlwaysAllowStore": true,
"DicomCheckModalityHost": false,
"DicomScuTimeout": 10,
"OrthancPeers": {},
"OrthancPeersInDatabase": false,
"HttpProxy": "",
"HttpVerbose": true,
"HttpTimeout": 10,
"HttpsVerifyPeers": true,
"HttpsCACertificates": "",
"UserMetadata": {},
"UserContentType": {},
"StableAge": 60,
"StrictAetComparison": false,
"StoreMD5ForAttachments": true,
"LimitFindResults": 0,
"LimitFindInstances": 0,
"LimitJobs": 10,
"LogExportedResources": false,
"KeepAlive": true,
"TcpNoDelay": true,
"HttpThreadsCount": 50,
"StoreDicom": true,
"DicomAssociationCloseDelay": 5,
"QueryRetrieveSize": 10,
"CaseSensitivePN": false,
"LoadPrivateDictionary": true,
"Dictionary": {},
"SynchronousCMove": true,
"JobsHistorySize": 10,
"SaveJobs": true,
"OverwriteInstances": false,
"MediaArchiveSize": 1,
"StorageAccessOnFind": "Always",
"MetricsEnabled": true,
"DicomWeb": {
"Enable": true,
"Root": "/dicom-web/",
"EnableWado": true,
"WadoRoot": "/wado",
"Host": "127.0.0.1",
"Ssl": false,
"StowMaxInstances": 10,
"StowMaxSize": 10,
"QidoCaseSensitive": false
}
}

View File

@ -24,13 +24,13 @@
"build:viewer:ci": "cross-env NODE_ENV=production PUBLIC_URL=/ APP_CONFIG=config/netlify.js QUICK_BUILD=false yarn run build",
"build:viewer:qa": "cross-env NODE_ENV=production APP_CONFIG=config/google.js yarn run build",
"build:viewer:demo": "cross-env NODE_ENV=production APP_CONFIG=config/demo.js HTML_TEMPLATE=rollbar.html QUICK_BUILD=false yarn run build",
"build": "node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --progress --config .webpack/webpack.pwa.js",
"build": "node --max_old_space_size=8096 ./../../node_modules/webpack/bin/webpack.js --progress --config .webpack/webpack.pwa.js",
"clean": "shx rm -rf dist",
"clean:deep": "yarn run clean && shx rm -rf node_modules",
"dev": "cross-env NODE_ENV=development webpack serve --config .webpack/webpack.pwa.js",
"dev:no:cache": "cross-env NODE_ENV=development webpack serve --no-cache --config .webpack/webpack.pwa.js",
"dev:orthanc": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack serve --config .webpack/webpack.pwa.js",
"dev:orthanc:no:cache": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack serve --no-cache --config .webpack/webpack.pwa.js",
"dev:orthanc": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker-nginx-orthanc.js webpack serve --config .webpack/webpack.pwa.js",
"dev:orthanc:no:cache": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker-nginx-orthanc.js webpack serve --no-cache --config .webpack/webpack.pwa.js",
"dev:dcm4chee": "cross-env NODE_ENV=development APP_CONFIG=config/local_dcm4chee.js webpack serve --config .webpack/webpack.pwa.js",
"dev:static": "cross-env NODE_ENV=development APP_CONFIG=config/local_static.js webpack serve --config .webpack/webpack.pwa.js",
"dev:viewer": "yarn run dev",
@ -88,6 +88,7 @@
"i18next-browser-languagedetector": "^3.0.1",
"lodash.isequal": "4.5.0",
"oidc-client": "1.11.5",
"oidc-client-ts": "^3.0.1",
"prop-types": "^15.7.2",
"query-string": "^6.12.1",
"react": "^18.3.1",

View File

@ -36,19 +36,4 @@ window.config = {
},
],
// This is an array, but we'll only use the first entry for now
oidc: [
{
// ~ REQUIRED
// Authorization Server URL
authority: 'http://127.0.0.1/auth/realms/ohif',
client_id: 'ohif-viewer',
redirect_uri: 'http://127.0.0.1/callback', // `OHIFStandaloneViewer.js`
// "Authorization Code Flow"
// Resource: https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660
response_type: 'code',
scope: 'openid', // email profile openid
// ~ OPTIONAL
post_logout_redirect_uri: '/logout-redirect.html',
},
],
};

View File

@ -0,0 +1,35 @@
/** @type {AppTypes.Config} */
window.config = {
routerBasename: '/ohif-viewer/',
showStudyList: true,
customizationService: {
dicomUploadComponent:
'@ohif/extension-cornerstone.customizationModule.cornerstoneDicomUploadComponent',
},
extensions: [],
modes: [],
// below flag is for performance reasons, but it might not work for all servers
showWarningMessageForCrossOrigin: true,
showCPUFallbackMessage: true,
showLoadingIndicator: true,
strictZSpacingForVolumeViewport: true,
defaultDataSourceName: 'dicomweb',
dataSources: [
{
namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
sourceName: 'dicomweb',
configuration: {
friendlyName: 'Dcm4chee Server',
name: 'Dcm4chee',
wadoUriRoot: 'http://127.0.0.1/pacs',
qidoRoot: 'http://127.0.0.1/pacs',
wadoRoot: 'http://127.0.0.1/pacs',
qidoSupportsIncludeField: false,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
dicomUploadEnabled: true,
omitQuotationForMultipartRequest: true,
},
},
],
};

View File

@ -0,0 +1,35 @@
/** @type {AppTypes.Config} */
window.config = {
routerBasename: '/',
showStudyList: true,
customizationService: {
dicomUploadComponent:
'@ohif/extension-cornerstone.customizationModule.cornerstoneDicomUploadComponent',
},
extensions: [],
modes: [],
// below flag is for performance reasons, but it might not work for all servers
showWarningMessageForCrossOrigin: true,
showCPUFallbackMessage: true,
showLoadingIndicator: true,
strictZSpacingForVolumeViewport: true,
defaultDataSourceName: 'dicomweb',
dataSources: [
{
namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
sourceName: 'dicomweb',
configuration: {
friendlyName: 'Dcm4chee Server',
name: 'Dcm4chee',
wadoUriRoot: '/dcm4chee-arc/aets/DCM4CHEE/wado',
qidoRoot: '/dcm4chee-arc/aets/DCM4CHEE/rs',
wadoRoot: '/dcm4chee-arc/aets/DCM4CHEE/rs',
qidoSupportsIncludeField: false,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
dicomUploadEnabled: true,
omitQuotationForMultipartRequest: true,
},
},
],
};

View File

@ -0,0 +1,52 @@
/** @type {AppTypes.Config} */
window.config = {
routerBasename: '/ohif-viewer',
extensions: [],
modes: [],
customizationService: {},
showStudyList: true,
maxNumberOfWebWorkers: 3,
showWarningMessageForCrossOrigin: true,
showCPUFallbackMessage: true,
showLoadingIndicator: true,
strictZSpacingForVolumeViewport: true,
groupEnabledModesFirst: true,
maxNumRequests: {
interaction: 100,
thumbnail: 75,
prefetch: 25,
},
defaultDataSourceName: 'dicomweb',
dataSources: [
{
namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
sourceName: 'dicomweb',
configuration: {
friendlyName: 'Local Orthanc',
name: 'Orthanc',
wadoUriRoot: 'http://127.0.0.1/pacs',
qidoRoot: 'http://127.0.0.1/pacs',
wadoRoot: 'http://127.0.0.1/pacs',
qidoSupportsIncludeField: false,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
enableStudyLazyLoad: true,
supportsFuzzyMatching: false,
supportsWildcard: true,
staticWado: true,
singlepart: 'bulkdata,video',
// whether the data source should use retrieveBulkData to grab metadata,
// and in case of relative path, what would it be relative to, options
// are in the series level or study level (some servers like series some study)
bulkDataURI: {
enabled: true,
},
omitQuotationForMultipartRequest: true,
},
},
],
httpErrorHandler: error => {
console.warn(error.status);
console.warn('test, navigate to https://ohif.org/');
},
};

View File

@ -29,8 +29,8 @@ window.config = {
friendlyName: 'Orthanc Server',
name: 'Orthanc',
wadoUriRoot: '/wado',
qidoRoot: '/dicom-web',
wadoRoot: '/dicom-web',
qidoRoot: '/pacs/dicom-web',
wadoRoot: '/pacs/dicom-web',
qidoSupportsIncludeField: false,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',

View File

@ -24,7 +24,7 @@ import {
UserAuthenticationProvider,
ToolboxProvider,
} from '@ohif/ui';
import { ThemeWrapper as ThemeWrapperNext, NotificationProvider } from '@ohif/ui-next';
import { ThemeWrapper as ThemeWrapperNext } from '@ohif/ui-next';
// Viewer Project
// TODO: Should this influence study list?
import { AppConfigProvider } from '@state';

View File

@ -1,4 +1,4 @@
import React from 'react';
import React, { useEffect } from 'react';
import PropTypes from 'prop-types';
function CallbackPage({ userManager, onRedirectSuccess }) {
@ -6,10 +6,12 @@ function CallbackPage({ userManager, onRedirectSuccess }) {
throw new Error(error);
};
userManager
.signinRedirectCallback()
.then(user => onRedirectSuccess(user))
.catch(error => onRedirectError(error));
useEffect(() => {
userManager
.signinRedirectCallback()
.then(user => onRedirectSuccess(user))
.catch(error => onRedirectError(error));
}, [userManager, onRedirectSuccess]);
return null;
}

View File

@ -1,4 +1,3 @@
import React from 'react';
import { useUserAuthentication } from '@ohif/ui';
export const PrivateRoute = ({ children, handleUnauthenticated }) => {

View File

@ -81,7 +81,7 @@ export default function buildModeRoutes({
routes.push({
path,
children,
private: true, // todo: all mode routes are private for now
private: true,
});
});

View File

@ -138,18 +138,20 @@ const createRoutes = ({
const { userAuthenticationService } = servicesManager.services;
// Note: PrivateRoutes in react-router-dom 6.x should be defined within
// a Route element
// All routes are private by default and then we let the user auth service
// to check if it is enabled or not
// Todo: I think we can remove the second public return below
return (
<Routes>
{allRoutes.map((route, i) => {
return route.private === true ? (
<Route
key={i}
exact
path={route.path}
element={
<PrivateRoute handleUnauthenticated={() => userAuthenticationService.handleUnauthenticated()}>
<PrivateRoute
handleUnauthenticated={() => userAuthenticationService.handleUnauthenticated()}
>
<RouteWithErrorBoundary route={route} />
</PrivateRoute>
}

View File

@ -3,7 +3,8 @@ import { useEffect } from 'react';
import { Route, Routes, useLocation, useNavigate } from 'react-router';
import CallbackPage from '../routes/CallbackPage';
import SignoutCallbackComponent from '../routes/SignoutCallbackComponent';
import getUserManagerForOpenIdConnectClient from './getUserManagerForOpenIdConnectClient.js';
import LegacyClient from './legacyOIDCClient';
import NextClient from './nextOIDCClient';
function _isAbsoluteUrl(url) {
return url.includes('http://') || url.includes('https://');
@ -43,7 +44,9 @@ const initUserManager = (oidc, routerBasename) => {
post_logout_redirect_uri: _makeAbsoluteIfNecessary(post_logout_redirect_uri, baseUri),
});
return getUserManagerForOpenIdConnectClient(openIdConnectConfiguration);
const client = firstOpenIdClient.useAuthorizationCodeFlow ? NextClient: LegacyClient
return client(openIdConnectConfiguration);
};
function LogoutComponent(props) {
@ -147,12 +150,18 @@ function OpenIdConnectRoutes({ oidc, routerBasename, userAuthenticationService }
const location = useLocation();
const { pathname, search } = location;
const redirect_uri = new URL(userManager.settings._redirect_uri).pathname.replace(
const redirectURI = userManager.settings._redirect_uri ?? userManager.settings.redirect_uri;
const silentRedirectURI =
userManager.settings._silent_redirect_uri ?? userManager.settings.silent_redirect_uri;
const postLogoutRedirectURI =
userManager.settings._post_logout_redirect_uri ?? userManager.settings.post_logout_redirect_uri;
const redirect_uri = new URL(redirectURI).pathname.replace(
routerBasename !== '/' ? routerBasename : '',
''
);
const silent_refresh_uri = new URL(userManager.settings._silent_redirect_uri).pathname; //.replace(routerBasename,'')
const post_logout_redirect_uri = new URL(userManager.settings._post_logout_redirect_uri).pathname; //.replace(routerBasename,'');
const silent_refresh_uri = new URL(silentRedirectURI).pathname; //.replace(routerBasename,'')
const post_logout_redirect_uri = new URL(postLogoutRedirectURI).pathname; //.replace(routerBasename,'');
// const pathnameRelative = pathname.replace(routerBasename,'');

View File

@ -0,0 +1,39 @@
import { UserManager } from 'oidc-client-ts';
/**
* Creates a userManager from oidcSettings
* LINK: https://github.com/IdentityModel/oidc-client-js/wiki#configuration
*
* @param {Object} oidcSettings
* @param {string} oidcSettings.authServerUrl,
* @param {string} oidcSettings.clientId,
* @param {string} oidcSettings.authRedirectUri,
* @param {string} oidcSettings.postLogoutRedirectUri,
* @param {string} oidcSettings.responseType,
* @param {string} oidcSettings.extraQueryParams,
*/
export default function getUserManagerForOpenIdConnectClient(oidcSettings) {
if (!oidcSettings) {
return;
}
if (!oidcSettings.authority || !oidcSettings.client_id || !oidcSettings.redirect_uri) {
console.error('Missing required oidc settings: authority, client_id, redirect_uri');
return;
}
const settings = {
...oidcSettings,
// The next client always use the code flow with PKCE
response_type: 'code',
revokeTokensOnSignout: oidcSettings.revokeAccessTokenOnSignout ?? true,
filterProtocolClaims: true,
loadUserInfo: true,
// the followings are default values in the lib so no need to set them
// automaticSilentRenew: true,
};
const userManager = new UserManager(settings);
return userManager;
}

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@ -102,13 +102,13 @@ is running the `dev:orthanc` script in our project's `package.json` (inside
`platform/app`). That script is:
```js
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker-nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
```
- `cross-env` sets three environment variables
- PROXY_TARGET: `/dicom-web`
- PROXY_DOMAIN: `http://localhost:8042`
- APP_CONFIG: `config/docker_nginx-orthanc.js`
- APP_CONFIG: `config/docker-nginx-orthanc.js`
- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
file. It will watch for changes and update as we develop.

View File

@ -1,32 +1,29 @@
---
sidebar_position: 6
sidebar_label: Authorization
sidebar_label: Auth
---
# Authorization
# Authorization and Authentication
The OHIF Viewer can be configured to work with authorization servers that support one or more of the OpenID-Connect authorization flows. The Viewer finds it's OpenID-Connect settings on the oidc configuration key. You can set these values in your configuration files. For instance you can take a look at our
`google.js` configuration file.
```js
oidc: [
{
// ~ REQUIRED
// Authorization Server URL
authority: 'https://accounts.google.com',
client_id:
'723928408739-k9k9r3i44j32rhu69vlnibipmmk9i57p.apps.googleusercontent.com',
redirect_uri: '/callback',
response_type: 'id_token token',
scope:
'email profile openid https://www.googleapis.com/auth/cloudplatformprojects.readonly https://www.googleapis.com/auth/cloud-healthcare', // email profile openid
// ~ OPTIONAL
post_logout_redirect_uri: '/logout-redirect.html',
revoke_uri: 'https://accounts.google.com/o/oauth2/revoke?token=',
automaticSilentRenew: true,
revokeAccessTokenOnSignout: true,
},
],
{
// ~ REQUIRED
authority: 'https://accounts.google.com',
client_id: '723928408739-k9k9r3i44j32rhu69vlnibipmmk9i57p.apps.googleusercontent.com',
redirect_uri: '/callback',
response_type: 'id_token token',
scope: 'email profile openid https://www.googleapis.com/auth/cloudplatformprojects.readonly https://www.googleapis.com/auth/cloud-healthcare', // email profile openid
// ~ OPTIONAL
post_logout_redirect_uri: '/logout-redirect.html',
revoke_uri: 'https://accounts.google.com/o/oauth2/revoke?token=',
automaticSilentRenew: true,
revokeAccessTokenOnSignout: true,
},
],
```
You need to provide the following information:
@ -53,8 +50,7 @@ const userAuthenticationService = servicesManager.services.userAuthenticationSer
Then the userAuthenticationService will inject the token as Authorization header in the requests that are sent to the server (both metadata
and pixelData).
## Token based authentication
## Token based authentication in URL
Sometimes (although not recommended), some servers like to send the token
in the query string. In this case, the viewer will automatically grab the token from the query string
and add it to the userAuthenticationService and remove it from the query string (to prevent it from being logged in the console
@ -65,3 +61,35 @@ and example would be
```js
http://localhost:3000/viewer?StudyInstanceUIDs=1.2.3.4.5.6.6.7&token=e123125jsdfahsdf
```
## Implicit Flow vs Authorization Code Flow
The Viewer supports both the Implicit Flow and the Authorization Code Flow. The Implicit Flow is the default currently, as it is easier to set up and use. However, you can opt for better security by using the Authorization Code Flow. To do so, add `useAuthorizationCodeFlow` to the configuration and change the `response_type` from `id_token token` to `code`.
Read more about Implicit Flow vs Authorization Code Flow [here](https://documentation.openiddict.com/guides/choosing-the-right-flow.html#:~:text=The%20implicit%20flow%20is%20similar,when%20using%20response_mode%3Dform_post%20) and [here](https://medium.com/@alysachan830/the-basics-of-oauth-2-0-authorization-code-implicit-flow-state-and-pkce-ed95d3478e1c)
```js
oidc: [
{
authority: 'https://accounts.google.com',
client_id: '723928408739-k9k9r3i44j32rhu69vlnibipmmk9i57p.apps.googleusercontent.com',
redirect_uri: '/callback',
scope: 'email profile openid',
post_logout_redirect_uri: '/logout-redirect.html',
revoke_uri: 'https://accounts.google.com/o/oauth2/revoke?token=',
revokeAccessTokenOnSignout: true,
automaticSilentRenew: true,
// CHANGE THESE *****************************
response_type: 'code',
useAuthorizationCodeFlow: true,
},
],
```
In fact, since browsers are blocking third-party cookies, the Implicit Flow will cease functioning in the future (not specific to OHIF). Read more [here](https://support.okta.com/help/s/article/FAQ-How-Blocking-Third-Party-Cookies-Can-Potentially-Impact-Your-Okta-Environment?language=en_US). It is recommended to use the Authorization Code Flow and begin migrating to it.
:::note
For the Authorization Code Flow, when authenticating against Google, you must add the `client_secret` to the configuration as well. Unfortunately, this seems to occur only with Google.
:::

View File

@ -1,5 +1,5 @@
---
sidebar_position: 10
sidebar_position: 9
---
# Google Cloud Healthcare

View File

@ -1,11 +1,9 @@
---
sidebar_position: 9
sidebar_position: 10
---
# Nginx + Image Archive
> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
> doubt, enlist the help of an expert and conduct proper audits.
At a certain point, you may want others to have access to your instance of the
OHIF Viewer and its medical imaging data. This post covers one of many potential
@ -16,19 +14,14 @@ Do not use this recipe to host sensitive medical data on the open web. Depending
on your company's policies, this may be an appropriate setup on an internal
network when protected with a server's basic authentication.
## Overview
Our two biggest hurdles when hosting our image archive and web client are:
- Risks related to exposing our PACS to the network
- Cross-Origin Resource Sharing (CORS) requests
### Handling Web Requests
We mitigate our first issue by allowing [Nginx][nginx] to handle incoming web
requests. Nginx is open source software for web serving, reverse proxying,
caching, and more. It's designed for maximum performance and stability --
allowing us to more reliably serve content than Orthanc's built-in server can.
allowing us to more reliably serve content.
More specifically, we accomplish this by using a
[`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy) to retrieve
@ -38,35 +31,16 @@ resources from our image archive (Orthanc), and when accessing its web admin.
> of a client from one or more servers. These resources are then returned to the
> client, appearing as if they originated from the proxy server itself.
### CORS Issues
Cross-Origin Resource Sharing (CORS) is a mechanism that uses HTTP headers to
tell a browser which web applications have permission to access selected
resources from a server at a different origin (domain, protocol, port). IE. By
default, a Web App located at `http://my-website.com` can't access resources
hosted at `http://not-my-website.com`
We can solve this one of two ways:
1. Have our Image Archive located at the same domain as our Web App
2. Add appropriate `Access-Control-Allow-*` HTTP headers
**This solution uses the first approach.**
You can read more about CORS in this Medium article: [Understanding
CORS][understanding-cors]
### Diagram
This setup allows us to create a setup similar to the one pictured below:
![nginX](../assets/img/nginx-image-archive.png)
- All web requests are routed through `nginx` on our `OpenResty` image
- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
- All web requests are routed through `nginx` image
- `/pacs/dicom-web` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints, which handles DICOM requests
- `/pacs` is a reverse proxy for `orthanc`'s Web Admin, which is the UI for managing studies
- All static resources for OHIF Viewer are served up by `nginx` when a matching
route for that resource is requested
@ -83,36 +57,40 @@ in command prompt or terminal_
### Setup
- Navigate to `app` folder inside `platform`
- then: `cd .recipes/OpenResty-Orthanc`
- `cd platform/app/.recipes/Nginx-Orthanc`
- run: `docker-compose up --build`
- Navigate to `127.0.0.1` for the viewer
- Navigate to `127.0.0.1/pacs-admin` for uploading studies via the UI, or send studies via DIMSE C-STORE to `ORTHANC@127.0.0.1:4242` (hint: you can use utilites like dcm4che's `storescu` to send studies in bulk via the command line)
- Navigate to `127.0.0.1` for the viewer (at first there is no study)
- Navigate to `127.0.0.1/pacs` for uploading studies via the UI, or send studies via DIMSE C-STORE to `ORTHANC@127.0.0.1:4242` (hint: you can use utilizes like dcm4che's `storescu` to send studies in bulk via the command line)
:::note
For subsequent runs, use `docker-compose up -d` to start the services without rebuilding the images. However, ensure you rebuild the images if you make changes to the Dockerfile. If you modify the configurations in the `nginx.conf` or `orthanc.json` files, you can restart the services by running `docker-compose up`, as these files are mounted as volumes.
```
Inside docker compose file you see the following volumes mounted:
volumes:
# Nginx config
- ./config/nginx.conf:/etc/nginx/nginx.conf
# Logs
- ./logs/nginx:/var/logs/nginx
```
:::
You can see the overview of the mentioned steps:
:::info
The following video demonstrates an outdated capture using the deprecated `OpenResty-Orthanc` recipe. However, it still provides insight into the steps for running the viewer with Orthanc. Use the new `Nginx-Orthanc` recipe for the most up-to-date instructions.
:::
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/843233827?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
<!-- ### Setup
_Spin Things Up_
- Navigate to `<project-root>/docker/OpenResty-Orthanc` in your shell
- Run `docker-compose up`
_Upload Your First Study_
- Navigate to `http://127.0.0.1/pacs-admin`
- From the top right, select "Upload"
- Click "Select files to upload..." (DICOM)
- Click "Start the upload"
- Navigate back to `http://127.0.0.1/` to view your studies in the Study List -->
### Troubleshooting
@ -154,10 +132,10 @@ configuration we use is set to a specific file when we build the viewer, and
determined by the env variable: `APP_CONFIG`. You can see where we set its value
in the `dockerfile` for this solution:
`ENV APP_CONFIG=config/docker_openresty-orthanc.js`
`ENV APP_CONFIG=config/docker-nginx-orthanc.js`
You can find the configuration we're using here:
`/public/config/docker_openresty-orthanc.js`
`/public/config/docker-nginx-orthanc.js`
To rebuild the `webapp` image created by our `dockerfile` after updating the
Viewer's configuration, you can run:
@ -167,78 +145,49 @@ Viewer's configuration, you can run:
#### Other
All other files are found in: `/docker/OpenResty-Orthanc/`
All other files are found in: `/docker/Nginx-Orthanc/`
| Service | Configuration | Docs |
| ----------------- | --------------------------------- | ------------------------------------------- |
| OHIF Viewer | [dockerfile][dockerfile] | You're reading them now! |
| OpenResty (Nginx) | [`/nginx.conf`][config-nginx] | [lua-resty-openidc][lua-resty-openidc-docs] |
| Nginx | [`/nginx.conf`][config-nginx] | |
| Orthanc | [`/orthanc.json`][config-orthanc] | [Here][orthanc-docs] |
## Next Steps
### OHIF + Dcm4chee
You can follow the similar steps above to run OHIF Viewer with Dcm4chee PACS.
The recipe for this setup can be found at `platform/app/.recipes/Nginx-Dcm4chee`.
The routes are as follows:
- `127.0.0.1` for the OHIF viewer
- `127.0.0.1/pacs` for the Dcm4chee UI
:::info
For uploading studies, you can see the following gif for the steps:
![alt text](../assets/img/dcm4chee-upload.gif)
:::
### Deploying to Production
While these configuration and docker-compose files model an environment suitable
for production, they are not easy to deploy "as is". You can either:
While you can deploy this solution to production, there is one main caveat: every user can access the app and the patient portal without any authentication. In the next step, we will add authentication with Keycloak to secure the app.
- Manually recreate this environment and deploy built application files **OR**
- Deploy to a cloud kubernetes provider like
[Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
- [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
- Find and follow your preferred provider's guide on setting up
[swarms and stacks](https://docs.docker.com/get-started/)
### Adding SSL
Adding SSL registration and renewal for your domain with Let's Encrypt that
terminates at Nginx is an incredibly important step toward securing your data.
Here are some resources, specific to this setup, that may be helpful:
- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
While we terminate SSL at Nginx, it may be worth using self-signed certificates
for communication between services.
- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
### Use PostgresSQL w/ Orthanc
Orthanc can handle a large amount of data and requests, but if you find that
requests start to slow as you add more and more studies, you may want to
configure your Orthanc instance to use PostgresSQL. Instructions on how to do
that can be found in the
[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
"PostgreSQL and Orthanc inside Docker"
### Improving This Guide
Here are some improvements this guide would benefit from, and that we would be
more than happy to accept Pull Requests for:
- SSL Support
- Complete configuration with `.env` file (or something similar)
- Any security issues
- One-click deploy to a cloud provider
- Add Docker caching for faster builds
## Resources
### Misc. Helpful Commands
_Check if `nginx.conf` is valid:_
```bash
docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
```
_Interact w/ running container:_
`docker exec -it CONTAINER_NAME bash`
_List running containers:_
`docker ps`
### Referenced Articles
@ -246,8 +195,6 @@ For more documentation on the software we've chosen to use, you may find the
following resources helpful:
- [Orthanc for Docker](http://book.orthanc-server.com/users/docker.html)
- [OpenResty Guide](http://www.staticshin.com/programming/definitely-an-open-resty-guide/)
- [Lua Ngx API](https://openresty-reference.readthedocs.io/en/latest/Lua_Nginx_API/)
For a different take on this setup, check out the repositories our community
members put together:

View File

@ -3,8 +3,10 @@ sidebar_position: 11
---
# User Account Control
> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
> doubt, enlist the help of an expert and conduct proper audits.
:::danger
DISCLAIMER: We make no claims or guarantees regarding the security of this approach. If you have any doubts, please consult an expert and conduct thorough audits.
:::
Making a viewer and its medical imaging data accessible on the open web can
provide a lot of benefits, but requires additional security to make sure
@ -18,7 +20,7 @@ sensitive data.
## Overview
This guide builds on top of our
[Nginx + Image Archive guide](/deployment/recipes/nginx--image-archive.md),
[Nginx + Image Archive guide](./nginx--image-archive.md),
wherein we used a [`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy)
to retrieve resources from our image archive (Orthanc).
@ -35,20 +37,43 @@ applications and services with little to no code. We improve upon our
This setup allows us to create a setup similar to the one pictured below:
![userControlFlow](../assets/img/user-access-control-request-flow.png)
![userControlFlow](../assets/img/ohif-pacs-keycloak.png)
- All web requests are routed through `nginx` on our `OpenResty` image
- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
- Requires valid `Authorization: Bearer <token>` header
- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
- `/auth` is a reverse proxy for `keycloak`
- All static resources for OHIF Viewer are unprotected and accessible. We have
application logic that will redirect unauthenticated users to the appropriate
`keycloak` login screen.
**Nginx:**
- Acts as a reverse proxy server that handles incoming requests to the domain (mydomain.com:80) and forwards them to the appropriate backend services.
- It also ensures that all requests go through the OAuth2 Proxy for authentication.
**OAuth2 Proxy:**
- Serves as an intermediary that authenticates users via OAuth2.
- Works in conjunction with Keycloak to manage user sessions and authentication tokens.
- Once the user is authenticated, it allows access to specific routes (/ohif-viewer, /pacs, /pacs-admin).
**Keycloak:**
- An open-source identity and access management solution.
- Manages user identities, including authentication and authorization.
- Communicates with the OAuth2 Proxy to validate user credentials and provide tokens for authenticated sessions.
**OHIF Viewer:**
- Hosted under the route /ohif-viewer, which serves the static assets of the OHIF Viewer.
**Orthanc/DCM4chee:**
- PACS (Picture Archiving and Communication System) for managing medical imaging data.
Exposes two routes:
- /pacs: Accesses the DICOM web services.
- /pacs-admin: Provides administrative and explorer interfaces.
## Getting Started - Orthanc
## Getting Started
### Requirements
@ -59,46 +84,336 @@ This setup allows us to create a setup similar to the one pictured below:
_Not sure if you have `docker` installed already? Try running `docker --version`
in command prompt or terminal_
### Setup
### Setup 1 - Trying Locally
_Spin Things Up_
Navigate to the Orthanc Keycloak configuration directory:
- Navigate to `<project-root>platform\app\.recipes\OpenResty-Orthanc-Keycloak` in your shell
- Run `docker-compose up`
`cd platform\app\.recipes\Nginx-Orthanc-Keycloak`
_Create Your First User_
Due to the increased complexity of this setup, we've introduced a magic word `YOUR_DOMAIN`. Replace this word with your project IP address to follow along more easily.
- Navigate to: `http://127.0.0.1/auth/admin`
- Sign in with: `admin`/`password`
- From the top left dropdown, select the `Ohif` realm
- From the left sidebar, under `Manage`, select `Users`
- Click `Add User`
- Username: `test`
- Email Verified: `ON`
- Click `Save`
- Click the `Credentials` Tab
- New Password: `test`
- Password Confirmation: `test`
- Temporary: `OFF`
- Click: `Reset Password`
- From the top right dropdown, select `Admin`, then `Sign Out`
Since we are running this locally, we will use `127.0.0.1` as our IP address.
_Sign In_
In the `docker-compose.yml` file, replace `YOUR_DOMAIN` with `127.0.0.1`.
- Navigate to `http://127.0.0.1/`
- Username: `test`, Password: `test`
- Click `Log In`
In the Keycloak service:
_Upload Your First Study_
- Navigate to `http://127.0.0.1/pacs-admin`
- If you're not already logged in, use `test`/`test`
- From the top right, select "Upload"
- Click "Select files to upload..." (DICOM)
- Click "Start the upload"
- Navigate back to `http://127.0.0.1/` to view your studies in the Study List
Before:
### Troubleshooting
```
KC_HOSTNAME_ADMIN_URL: http://YOUR_DOMAIN/keycloak/
KC_HOSTNAME_URL: http://YOUR_DOMAIN/keycloak/
```
After
```
KC_HOSTNAME_ADMIN_URL: http://127.0.0.1/keycloak/
KC_HOSTNAME_URL: http://127.0.0.1/keycloak/
```
In the Keycloak healthcheck, replace `YOUR_DOMAIN` with `localhost`.
In the Nginx config, change:
```
server_name YOUR_DOMAIN;
```
to:
```
server_name 127.0.0.1;
```
Since we're not using SSL, remove the following lines from the Nginx config file and create one server instead of two:
Before (two servers one for http and one for https):
```
server {
listen 80;
server_name YOUR_DOMAIN;
location /.well-known/acme-challenge/ {
root /var/www/certbot;
}
location / {
return 301 https://$host$request_uri;
}
}
server {
listen 443 ssl;
server_name YOUR_DOMAIN;
ssl_certificate /etc/letsencrypt/live/ohifviewer.duckdns.org/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/ohifviewer.duckdns.org/privkey.pem;
root /var/www/html;
```
After (merging both servers into one only http server):
```
server {
listen 80;
server_name 127.0.0.1;
location /.well-known/acme-challenge/ {
root /var/www/certbot;
}
root /var/www/html;
```
In OAuth2-proxy configuration at `oauth2-proxy.cfg`
Before:
```
redirect_url="http://YOUR_DOMAIN/oauth2/callback"
oidc_issuer_url="http://YOUR_DOMAIN/keycloak/realms/ohif"
```
After:
```
redirect_url="http://127.0.0.1/oauth2/callback"
oidc_issuer_url="http://127.0.0.1/keycloak/realms/ohif"
```
Finally, in the docker-nginx-orthanc-keycloak config file that lives in `platform/app/public/config/docker-nginx-orthanc-keycloak.js`, replace `YOUR_DOMAIN` with
Before:
```
wadoUriRoot: 'http://YOUR_DOMAIN/pacs',
qidoRoot: 'http://YOUR_DOMAIN/pacs',
wadoRoot: 'http://YOUR_DOMAIN/pacs',
```
After:
```
wadoUriRoot: 'http://127.0.0.1/pacs',
qidoRoot: 'http://127.0.0.1/pacs',
wadoRoot: 'http://127.0.0.1/pacs',
```
:::note
This is the config that is used inside the dockerfile to build the viewer, look at dockerfile
`ENV APP_CONFIG=config/docker-nginx-orthanc-keycloak.js`
:::
Run the following command to start the services:
```
docker-compose up --build
```
You can watch the following video, which will guide you through the process of setting up Orthanc with keycloak and OHIF locally.
We have set up two predefined users in Keycloak:
- `user: admin password: admin` - Has access to keycloak portal for managing users and clients
- `user: viewer password: viewer` - Has access to the OHIF Viewer but not the pacs-admin
- `user: pacsadmin password: pacsadmin` - Has access to both the pacs-admin for uploading and the OHIF Viewer
You can navigate to:
- `http://127.0.0.1` - This will redirect you to `http://127.0.0.1/ohif-viewer`, prompting you to log in with Keycloak using either user
- `http://127.0.0.1/pacs-admin` - Only the `pacsadmin` user can access this route, while the `viewer` user cannot
-
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/981362196?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
### Step 2 - Trying via a Server
Now that you have successfully set up Orthanc with Keycloak and OHIF locally, you can deploy it to a server. While you can rent a server from any provider, this tutorial will demonstrate the process using Linode as an example.
You can watch the following video, which will guide you through the process.
Some notes:
- Since this is a remote machine we need to clone the repo
- Typically a Linux machine, you need to download and install Docker on it
- Use the Visual Studio Code Remote SSH extension to connect to the server
- Use docker extension in Visual Studio Code to manage the containers
- The public IP address of the server now becomes the YOUR_DOMAIN and is used in the configuration files.
Still we have not set up SSL, so we will use HTTP instead of HTTPS.
We should use the same one server configuration as we did locally for Nginx (but with the new server IP address)
:::info
Don't forget to change the `docker-ngix-orthanc-keycloak.js` file to use the new server IP address.
:::
After you run `docker compose up --build` you can navigate to the server IP address and see the viewer will not work...
We have encountered some strange issues with the Keycloak service not allowing non-HTTPS connections (around 10:00). To resolve this, we need to modify the Keycloak configuration to permit HTTPS. This requires accessing the container and making the necessary changes.
After accessing the container shell
```
cd /opt/keycloak/bin
./kcadm.sh config credentials --server http://localhost:8080 --realm master --user admin
./kcadm.sh update realms/master -s sslRequired=NONE
```
After we need to change some configurations in the Keycloak UI to enable the connection in the server
Navigate to
```
http://IP_ADDRESS/keycloak
```
which will redirect you to the Keycloak login page
0. login with the admin user `admin` and password `admin`
1. From the top left drop down menu, select `ohif` realm
2. Go to `Clients` and select `ohif_viewer`
3. In the `Access Settings` change all instances of `http://127.0.0.1` to `http://IP_ADDRESS`
1. Root URL: `http://IP_ADDRESS`
2. Home URL: `http://IP_ADDRESS`
3. Valid Redirect URIs: `http://IP_ADDRESS/oauth2/callback`
4. Valid post logout URIs: `*`
5. Web Origins: `http://IP_ADDRESS`
6. Admin URL: `http://IP_ADDRESS`
Now if you navigate to the IP address it should work !!
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/981362334?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
### Step 3 - Adding SSL and Deploying to Production
Now we'll add an SSL certificate to our server to enable HTTPS. We'll use Let's Encrypt to generate the SSL certificate.
Let's Encrypt requires a domain name, so we'll use a free domain name service like DuckDNS (duckdns.org). Follow these steps:
1. Visit https://www.duckdns.org/ and create an account.
2. Create a free domain name and point it to your server's IP address.
You can watch a video guide for this process if needed.
Replace `YOUR_DOMAIN` with your new domain name in the `docker-compose.yml` file and all other config files, as we did previously.
Next, we'll add HTTPS support. Add the following lines to the Nginx config file:
(Note: We'll have both HTTP and HTTPS servers, and the server IP will use HTTPS)
```
server {
listen 80;
server_name https://IP_ADDRESS;
location /.well-known/acme-challenge/ {
root /var/www/certbot;
}
location / {
return 301 https://$host$request_uri;
}
}
server {
listen 443 ssl;
server_name https://IP_ADDRESS;
ssl_certificate /etc/letsencrypt/live/ohifviewer.duckdns.org/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/ohifviewer.duckdns.org/privkey.pem;
root /var/www/html;
```
Don't forget to replace `YOUR_DOMAIN` with the new domain name in the `docker-nginx-orthanc-keycloak.js` file.
:::info
Remember to include `https://` when adding the domain name to the configurations.
:::
Now, we need to add a certificate. Let's assume we have the domain name `hospital.duckdns.org` and the email we registered with DuckDNS is `your_email@example.com`.
```
docker run -it --rm --name certbot \
-v ./config/letsencrypt:/etc/letsencrypt \
-v ./config/certbot:/var/www/certbot \
-p 80:80 \
certbot/certbot certonly \
--standalone \
--preferred-challenges http \
--email your_email@example.com \
--agree-tos \
--no-eff-email \
-d hospital.duckdns.org
```
:::note
Replace "hospital.duckdns.org" with your domain name and update the email address accordingly.
:::
:::warning
DuckDNS is suitable for testing and demonstration purposes only. For production environments, use a proper domain name and SSL certificate to ensure security.
:::
If you follow these steps, you'll encounter the error `invalid parameter: redirect_uri` when attempting to log in to Keycloak. This occurs because the redirect URL isn't set up correctly in the Keycloak client configuration. To resolve this, we need to log in and adjust these settings.
Navigate to:
```
http://IP_ADDRESS/keycloak
```
Log in using the admin credentials:
- Username: `admin`
- Password: `admin`
Replace all IP addresses with the new domain name, using HTTPS.
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/981362676?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
## Getting Started - DCM4CHEE
You can follow the same steps as above to set up DCM4CHEE. The only difference is that you need to navigate to the correct directory. `platform\app\.recipes\Nginx-Dcm4chee-Keycloak`
You can watch the following video, which will guide you through the process of setting up DCM4CHEE.
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/981362509?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
## Troubleshooting
_invalid parameter: redirect_uri_
This means the redirect URL isn't set up correctly in the Keycloak client configuration. To resolve this, log in to Keycloak and adjust the settings in the correct client (ohif_viewer) and correct realm (ohif).
_Exit code 137_
@ -116,14 +431,6 @@ Stop running all containers:
- Win: `docker ps -a -q | ForEach { docker stop $_ }`
- Linux: `docker stop $(docker ps -a -q)`
### Configuration
After verifying that everything runs with default configuration values, you will
likely want to update:
- The domain: `http://127.0.0.1`
- Set secure, non-default passwords
- Regenerate Keycloak Client Secrets
#### OHIF Viewer
@ -132,10 +439,10 @@ configuration we use is set to a specific file when we build the viewer, and
determined by the env variable: `APP_CONFIG`. You can see where we set its value
in the `dockerfile` for this solution:
`ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
`ENV APP_CONFIG=config/docker-nginx-orthanc-keycloak.js`
You can find the configuration we're using here:
`/public/config/docker_openresty-orthanc-keycloak.js`
`/public/config/docker-nginx-orthanc-keycloak.js`
To rebuild the `webapp` image created by our `dockerfile` after updating the
Viewer's configuration, you can run:
@ -143,25 +450,15 @@ Viewer's configuration, you can run:
- `docker-compose build` OR
- `docker-compose up --build`
#### Other
All other files are found in: `/docker/OpenResty-Orthanc-Keycloak/`
| Service | Configuration | Docs |
| ----------------- | ------------------------------------------------ | ------------------------------------------- |
| OHIF Viewer | [dockerfile][dockerfile] / [config.js][config] | You're reading them now! |
| OpenResty (Nginx) | [`/nginx.conf`][config-nginx] | [lua-resty-openidc][lua-resty-openidc-docs] |
| Orthanc | [`/orthanc.json`][config-orthanc] | [Here][orthanc-docs] |
| Keycloak | [`/ohif-keycloak-realm.json`][config-keycloak]\* | |
## Next Steps
\* These are the seed values for Keycloak. They can be manually updated at
`http://127.0.0.1/auth/admin`
#### Keycloak Themeing
### Keycloak Theming
The `Login` screen for the `ohif-viewer` client is using a Custom Keycloak
theme. You can find the source files for it in
`/docker/OpenResty-Orthanc-Keycloak/volumes/keycloak-themes/`. You can see how
`platform/app/.recipes/deprecated-recipes/OpenResty-Orthanc-Keycloak/volumes/keycloak-themes`. You can see how
we add it to Keycloak in the `docker-compose` file, and you can read up on how
to leverage custom themes in
[Keycloak's own docs](https://www.keycloak.org/docs/latest/server_development/index.html#_themes).
@ -170,77 +467,12 @@ to leverage custom themes in
| ---------------------------------------------------------------------- | ---------------------------------------------------------------- |
| ![Keycloak Default Theme](../assets/img/keycloak-default-theme.png) | ![Keycloak OHIF Theme](../assets/img/keycloak-ohif-theme.png) |
## Next Steps
### Deploying to Production
While these configuration and docker-compose files model an environment suitable
for production, they are not easy to deploy "as is". You can either:
- Manually recreate this environment and deploy built application files **OR**
- Deploy to a cloud kubernetes provider like
[Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
- [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
- Find and follow your preferred provider's guide on setting up
[swarms and stacks](https://docs.docker.com/get-started/)
### Adding SSL
Adding SSL registration and renewal for your domain with Let's Encrypt that
terminates at Nginx is an incredibly important step toward securing your data.
Here are some resources, specific to this setup, that may be helpful:
- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
While we terminate SSL at Nginx, it may be worth using self signed certificates
for communication between services.
- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
### Use PostgresSQL w/ Orthanc
Orthanc can handle a large amount of data and requests, but if you find that
requests start to slow as you add more and more studies, you may want to
configure your Orthanc instance to use PostgresSQL. Instructions on how to do
that can be found in the
[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
"PostgreSQL and Orthanc inside Docker"
### Improving This Guide
Here are some improvements this guide would benefit from, and that we would be
more than happy to accept Pull Requests for:
- SSL Support
- Complete configuration with `.env` file (or something similar)
- Keycloak Theme improvements
- Any security issues
- One-click deploy to a cloud provider
## Resources
### Misc. Helpful Commands
_Check if `nginx.conf` is valid:_
```bash
docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
```
_Interact w/ running container:_
`docker exec -it CONTAINER_NAME bash`
_List running containers:_
`docker ps`
_Clear Keycloak DB so you can re-seed values:_
- `docker volume prune` OR
- `docker volume ls` and `docker volume rm VOLUME_NAME VOLUME_NAME`
### Referenced Articles
The inspiration for our setup was driven largely by these articles:

View File

@ -148,7 +148,7 @@ This is a flag that you can set in your [configuration file](../configuration/co
For instance for a large pt/ct study
![](../assets/img/large-pt-ct.png)
![](../assets/img/large-pt-ct.jpeg)
Before (without the flag) the app shows 399 MB of memory usage

View File

@ -465,7 +465,7 @@ window.config = {
...
```
<img src="../../../assets/img/customizable-overlay.png" />
<img src="../../../assets/img/customizable-overlay.jpeg" />
## Context Menus

View File

@ -93,13 +93,13 @@ is running the `dev:orthanc` script in our project's `package.json`. That script
is:
```js
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker-nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
```
- `cross-env` sets three environment variables
- PROXY_TARGET: `/dicom-web`
- PROXY_DOMAIN: `http://localhost:8042`
- APP_CONFIG: `config/docker_nginx-orthanc.js`
- APP_CONFIG: `config/docker-nginx-orthanc.js`
- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
file. It will watch for changes and update as we develop.

View File

@ -13734,6 +13734,11 @@ jsprim@^2.0.2:
object.assign "^4.1.4"
object.values "^1.1.6"
jwt-decode@^4.0.0:
version "4.0.0"
resolved "https://registry.yarnpkg.com/jwt-decode/-/jwt-decode-4.0.0.tgz#2270352425fd413785b2faf11f6e755c5151bd4b"
integrity sha512-+KJGIyHgkGuIq3IEBNftfhW/LfWhXUIY6OmyVWjliu5KH1y0fw7VQ8YndE2O4qZdMSd9SqbnC8GOcZEy0Om7sA==
keyv@^4.5.3:
version "4.5.4"
resolved "https://registry.yarnpkg.com/keyv/-/keyv-4.5.4.tgz#a879a99e29452f942439f2a405e3af8b31d4de93"
@ -15924,6 +15929,13 @@ ohash@^1.1.3:
resolved "https://registry.yarnpkg.com/ohash/-/ohash-1.1.3.tgz#f12c3c50bfe7271ce3fd1097d42568122ccdcf07"
integrity sha512-zuHHiGTYTA1sYJ/wZN+t5HKZaH23i4yI1HMwbuXm24Nid7Dv0KcuRlKoNKS9UNfAVSBlnGLcuQrnOKWOZoEGaw==
oidc-client-ts@^3.0.1:
version "3.0.1"
resolved "https://registry.yarnpkg.com/oidc-client-ts/-/oidc-client-ts-3.0.1.tgz#be264fb87c89f74f73863646431c32cd06f5ceb7"
integrity sha512-xX8unZNtmtw3sOz4FPSqDhkLFnxCDsdo2qhFEH2opgWnF/iXMFoYdBQzkwCxAZVgt3FT3DnuBY3k80EZHT0RYg==
dependencies:
jwt-decode "^4.0.0"
oidc-client@1.11.5:
version "1.11.5"
resolved "https://registry.yarnpkg.com/oidc-client/-/oidc-client-1.11.5.tgz#020aa193d68a3e1f87a24fcbf50073b738de92bb"