remove unused files
This commit is contained in:
dannyrb
parent
a99badd011
commit
c2853f719a
@ -1,37 +0,0 @@
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import React, { useContext } from 'react';
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import { useSelector } from 'react-redux';
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import { getActiveContexts } from '../store/layout/selectors.js';
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let AppContext = React.createContext({});
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export const CONTEXTS = {
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CORNERSTONE: 'ACTIVE_VIEWPORT::CORNERSTONE',
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VTK: 'ACTIVE_VIEWPORT::VTK',
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};
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export const useAppContext = () => useContext(AppContext);
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export const AppProvider = ({ children, config }) => {
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const activeContexts = useSelector(state => getActiveContexts(state));
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return (
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<AppContext.Provider value={{ appConfig: config, activeContexts }}>
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{children}
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</AppContext.Provider>
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);
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};
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export const withAppContext = Component => {
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return function WrappedComponent(props) {
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const { appConfig, activeContexts } = useAppContext();
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return (
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<Component
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{...props}
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appConfig={appConfig}
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activeContexts={activeContexts}
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/>
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);
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};
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};
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export default AppContext;
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@ -1,10 +0,0 @@
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import OHIFLogo from '../components/OHIFLogo/OHIFLogo.js';
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import React from 'react';
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const defaultContextValues = {
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createLogoComponentFn: React => OHIFLogo(),
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};
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const WhiteLabelingContext = React.createContext(defaultContextValues);
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export default WhiteLabelingContext;
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@ -1,578 +0,0 @@
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import React, { useState, useEffect, useContext } from 'react';
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import PropTypes from 'prop-types';
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import OHIF from '@ohif/core';
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import { withRouter } from 'react-router-dom';
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import { useTranslation } from 'react-i18next';
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import {
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StudyList,
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PageToolbar,
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TablePagination,
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useDebounce,
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useMedia,
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} from '@ohif/ui';
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import ConnectedHeader from '../connectedComponents/ConnectedHeader.js';
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import * as RoutesUtil from '../routes/routesUtil';
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import moment from 'moment';
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import ConnectedDicomFilesUploader from '../googleCloud/ConnectedDicomFilesUploader';
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import ConnectedDicomStorePicker from '../googleCloud/ConnectedDicomStorePicker';
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import filesToStudies from '../lib/filesToStudies.js';
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// Contexts
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import UserManagerContext from '../context/UserManagerContext';
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import WhiteLabelingContext from '../context/WhiteLabelingContext';
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import AppContext from '../context/AppContext';
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const { urlUtil: UrlUtil } = OHIF.utils;
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function StudyListRoute(props) {
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const { history, server, user, studyListFunctionsEnabled } = props;
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const [t] = useTranslation('Common');
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// ~~ STATE
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const [sort, setSort] = useState({
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fieldName: 'PatientName',
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direction: 'desc',
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});
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const [filterValues, setFilterValues] = useState({
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studyDateTo: null,
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studyDateFrom: null,
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PatientName: '',
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PatientID: '',
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AccessionNumber: '',
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StudyDate: '',
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modalities: '',
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StudyDescription: '',
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//
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patientNameOrId: '',
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accessionOrModalityOrDescription: '',
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//
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allFields: '',
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});
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const [studies, setStudies] = useState([]);
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const [searchStatus, setSearchStatus] = useState({
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isSearchingForStudies: false,
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error: null,
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});
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const [activeModalId, setActiveModalId] = useState(null);
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const [rowsPerPage, setRowsPerPage] = useState(25);
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const [pageNumber, setPageNumber] = useState(0);
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const appContext = useContext(AppContext);
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// ~~ RESPONSIVE
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const displaySize = useMedia(
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[
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'(min-width: 1750px)',
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'(min-width: 1000px) and (max-width: 1749px)',
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'(max-width: 999px)',
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],
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['large', 'medium', 'small'],
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'small'
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);
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// ~~ DEBOUNCED INPUT
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const debouncedSort = useDebounce(sort, 200);
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const debouncedFilters = useDebounce(filterValues, 250);
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// Google Cloud Adapter for DICOM Store Picking
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const { appConfig = {} } = appContext;
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const isGoogleCHAIntegrationEnabled =
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!server && appConfig.enableGoogleCloudAdapter;
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if (isGoogleCHAIntegrationEnabled && activeModalId !== 'DicomStorePicker') {
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setActiveModalId('DicomStorePicker');
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}
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// Called when relevant state/props are updated
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// Watches filters and sort, debounced
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useEffect(
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() => {
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const fetchStudies = async () => {
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try {
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setSearchStatus({ error: null, isSearchingForStudies: true });
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const response = await getStudyList(
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server,
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debouncedFilters,
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debouncedSort,
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rowsPerPage,
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pageNumber,
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displaySize
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);
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setStudies(response);
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setSearchStatus({ error: null, isSearchingForStudies: false });
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} catch (error) {
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console.warn(error);
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setSearchStatus({ error: true, isFetching: false });
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}
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};
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if (server) {
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fetchStudies();
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}
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},
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// TODO: Can we update studies directly?
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// eslint-disable-next-line react-hooks/exhaustive-deps
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[
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debouncedFilters,
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debouncedSort,
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rowsPerPage,
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pageNumber,
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displaySize,
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server,
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]
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);
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// TODO: Update Server
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// if (this.props.server !== prevProps.server) {
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// this.setState({
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// modalComponentId: null,
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// searchData: null,
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// studies: null,
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// });
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// }
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const onDrop = async acceptedFiles => {
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try {
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const studiesFromFiles = await filesToStudies(acceptedFiles);
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setStudies(studiesFromFiles);
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} catch (error) {
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setSearchStatus({ isSearchingForStudies: false, error });
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}
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};
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if (searchStatus.error) {
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return <div>Error: {JSON.stringify(searchStatus.error)}</div>;
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} else if (studies === [] && !activeModalId) {
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return <div>Loading...</div>;
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}
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let healthCareApiButtons = null;
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let healthCareApiWindows = null;
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if (appConfig.enableGoogleCloudAdapter) {
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const isModalOpen = activeModalId === 'DicomStorePicker';
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updateURL(isModalOpen, appConfig, server, history);
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healthCareApiWindows = (
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<ConnectedDicomStorePicker
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isOpen={activeModalId === 'DicomStorePicker'}
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onClose={() => setActiveModalId(null)}
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/>
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);
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healthCareApiButtons = (
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<div
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className="form-inline btn-group pull-right"
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style={{ padding: '20px' }}
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>
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<button
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className="btn btn-primary"
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onClick={() => setActiveModalId('DicomStorePicker')}
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>
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{t('Change DICOM Store')}
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</button>
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</div>
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);
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}
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function handleSort(fieldName) {
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let sortFieldName = fieldName;
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let sortDirection = 'asc';
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if (fieldName === sort.fieldName) {
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if (sort.direction === 'asc') {
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sortDirection = 'desc';
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} else {
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sortFieldName = null;
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sortDirection = null;
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}
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}
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setSort({
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fieldName: sortFieldName,
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direction: sortDirection,
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});
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}
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function handleFilterChange(fieldName, value) {
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setFilterValues(state => {
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return {
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...state,
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[fieldName]: value,
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};
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});
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}
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return (
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<>
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{studyListFunctionsEnabled ? (
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<ConnectedDicomFilesUploader
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isOpen={activeModalId === 'DicomFilesUploader'}
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onClose={() => setActiveModalId(null)}
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/>
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) : null}
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{healthCareApiWindows}
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<WhiteLabelingContext.Consumer>
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{whiteLabeling => (
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<UserManagerContext.Consumer>
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{userManager => (
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<ConnectedHeader
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useLargeLogo={true}
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user={user}
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userManager={userManager}
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>
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{whiteLabeling &&
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whiteLabeling.createLogoComponentFn &&
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whiteLabeling.createLogoComponentFn(React)}
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</ConnectedHeader>
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)}
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</UserManagerContext.Consumer>
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)}
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</WhiteLabelingContext.Consumer>
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<div className="study-list-header">
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<div className="header">
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<h1 style={{ fontWeight: 300, fontSize: '22px' }}>
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{t('StudyList')}
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</h1>
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</div>
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<div className="actions">
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{studyListFunctionsEnabled && healthCareApiButtons}
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{studyListFunctionsEnabled && (
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<PageToolbar
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onImport={() => setActiveModalId('DicomFilesUploader')}
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/>
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)}
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<span className="study-count">{studies.length}</span>
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</div>
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</div>
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<div className="table-head-background" />
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<div className="study-list-container">
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{/* STUDY LIST OR DROP ZONE? */}
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<StudyList
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isLoading={searchStatus.isSearchingForStudies}
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hasError={searchStatus.error === true}
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// Rows
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studies={studies}
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onSelectItem={studyInstanceUID => {
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const viewerPath = RoutesUtil.parseViewerPath(appConfig, server, {
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studyInstanceUIDs: studyInstanceUID,
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});
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history.push(viewerPath);
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}}
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// Table Header
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sort={sort}
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onSort={handleSort}
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filterValues={filterValues}
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onFilterChange={handleFilterChange}
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studyListDateFilterNumDays={appConfig.studyListDateFilterNumDays}
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displaySize={displaySize}
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/>
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{/* PAGINATION FOOTER */}
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<TablePagination
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currentPage={pageNumber}
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nextPageFunc={() => setPageNumber(pageNumber + 1)}
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prevPageFunc={() => setPageNumber(pageNumber - 1)}
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onRowsPerPageChange={Rows => setRowsPerPage(Rows)}
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rowsPerPage={rowsPerPage}
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recordCount={studies.length}
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/>
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</div>
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</>
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);
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}
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StudyListRoute.propTypes = {
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filters: PropTypes.object,
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PatientID: PropTypes.string,
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server: PropTypes.object,
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user: PropTypes.object,
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history: PropTypes.object,
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studyListFunctionsEnabled: PropTypes.bool,
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};
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StudyListRoute.defaultProps = {
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studyListFunctionsEnabled: true,
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};
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function updateURL(isModalOpen, appConfig, server, history) {
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if (isModalOpen) {
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return;
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}
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const listPath = RoutesUtil.parseStudyListPath(appConfig, server);
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if (UrlUtil.paramString.isValidPath(listPath)) {
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const { location = {} } = history;
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if (location.pathname !== listPath) {
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history.replace(listPath);
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}
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}
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}
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/**
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* Not ideal, but we use displaySize to determine how the filters should be used
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* to build the collection of promises we need to fetch a result set.
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*
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* @param {*} server
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* @param {*} filters
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* @param {object} sort
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* @param {string} sort.fieldName - field to sort by
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* @param {string} sort.direction - direction to sort
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* @param {number} rowsPerPage - Number of results to return
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* @param {number} pageNumber - Used to determine results offset
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* @param {string} displaySize - small, medium, large
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* @returns
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*/
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async function getStudyList(
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server,
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filters,
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sort,
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rowsPerPage,
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pageNumber,
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displaySize
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) {
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const {
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allFields,
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patientNameOrId,
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accessionOrModalityOrDescription,
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} = filters;
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const sortFieldName = sort.fieldName || 'PatientName';
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const sortDirection = sort.direction || 'desc';
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const studyDateFrom =
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filters.studyDateFrom ||
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moment()
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.subtract(25000, 'days')
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.toDate();
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const studyDateTo = filters.studyDateTo || new Date();
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const mappedFilters = {
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PatientID: filters.PatientID,
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PatientName: filters.PatientName,
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AccessionNumber: filters.AccessionNumber,
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StudyDescription: filters.StudyDescription,
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ModalitiesInStudy: filters.modalities,
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// NEVER CHANGE
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studyDateFrom,
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studyDateTo,
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limit: rowsPerPage,
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offset: pageNumber * rowsPerPage,
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fuzzymatching: server.supportsFuzzyMatching === true,
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};
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const studies = await _fetchStudies(server, mappedFilters, displaySize, {
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allFields,
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patientNameOrId,
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accessionOrModalityOrDescription,
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});
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// Only the fields we use
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const mappedStudies = studies.map(study => {
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const PatientName =
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typeof study.PatientName === 'string' ? study.PatientName : undefined;
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return {
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AccessionNumber: study.AccessionNumber, // "1"
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modalities: study.modalities, // "SEG\\MR"
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// numberOfStudyRelatedInstances: "3"
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// numberOfStudyRelatedSeries: "3"
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// PatientBirthdate: undefined
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PatientID: study.PatientID, // "NOID"
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PatientName, // "NAME^NONE"
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// PatientSex: "M"
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// referringPhysicianName: undefined
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StudyDate: study.StudyDate, // "Jun 28, 2002"
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StudyDescription: study.StudyDescription, // "BRAIN"
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// studyId: "No Study ID"
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StudyInstanceUID: study.StudyInstanceUID, // "1.3.6.1.4.1.5962.99.1.3814087073.479799962.1489872804257.3.0"
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// StudyTime: "160956.0"
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};
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});
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// For our smaller displays, map our field name to a single
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// field we can actually sort by.
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const sortFieldNameMapping = {
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allFields: 'PatientName',
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patientNameOrId: 'PatientName',
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accessionOrModalityOrDescription: 'modalities',
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};
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const mappedSortFieldName =
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sortFieldNameMapping[sortFieldName] || sortFieldName;
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const sortedStudies = _sortStudies(
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mappedStudies,
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mappedSortFieldName,
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sortDirection
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);
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// Because we've merged multiple requests, we may have more than
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// our Rows per page. Let's `take` that number from our sorted array.
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// This "might" cause paging issues.
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const numToTake =
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sortedStudies.length < rowsPerPage ? sortedStudies.length : rowsPerPage;
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const result = sortedStudies.slice(0, numToTake);
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return result;
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}
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/**
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*
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*
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* @param {object[]} studies - Array of studies to sort
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* @param {string} studies.StudyDate - Date in 'MMM DD, YYYY' format
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* @param {string} field - name of properties on study to sort by
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* @param {string} order - 'asc' or 'desc'
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* @returns
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*/
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function _sortStudies(studies, field, order) {
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// Make sure our StudyDate is in a valid format and create copy of studies array
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const sortedStudies = studies.map(study => {
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if (!moment(study.StudyDate, 'MMM DD, YYYY', true).isValid()) {
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study.StudyDate = moment(study.StudyDate, 'YYYYMMDD').format(
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'MMM DD, YYYY'
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);
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}
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return study;
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});
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// Sort by field
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sortedStudies.sort(function(a, b) {
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let fieldA = a[field];
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let fieldB = b[field];
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if (field === 'StudyDate') {
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fieldA = moment(fieldA).toISOString();
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fieldB = moment(fieldB).toISOString();
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}
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// Order
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if (order === 'desc') {
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if (fieldA < fieldB) {
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return -1;
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}
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if (fieldA > fieldB) {
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return 1;
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}
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return 0;
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} else {
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if (fieldA > fieldB) {
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return -1;
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}
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if (fieldA < fieldB) {
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return 1;
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}
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return 0;
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}
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});
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return sortedStudies;
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}
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/**
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* We're forced to do this because DICOMWeb does not support "AND|OR" searches
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* across multiple fields. This allows us to make multiple requests, remove
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* duplicates, and return the result set as if it were supported
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*
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* @param {object} server
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* @param {Object} filters
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* @param {string} displaySize - small, medium, or large
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* @param {string} multi.allFields
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* @param {string} multi.patientNameOrId
|
||||
* @param {string} multi.accessionOrModalityOrDescription
|
||||
*/
|
||||
async function _fetchStudies(
|
||||
server,
|
||||
filters,
|
||||
displaySize,
|
||||
{ allFields, patientNameOrId, accessionOrModalityOrDescription }
|
||||
) {
|
||||
let queryFiltersArray = [filters];
|
||||
|
||||
if (displaySize === 'small') {
|
||||
const firstSet = _getQueryFiltersForValue(
|
||||
filters,
|
||||
[
|
||||
'PatientID',
|
||||
'PatientName',
|
||||
'AccessionNumber',
|
||||
'StudyDescription',
|
||||
'ModalitiesInStudy',
|
||||
],
|
||||
allFields
|
||||
);
|
||||
|
||||
if (firstSet.length) {
|
||||
queryFiltersArray = firstSet;
|
||||
}
|
||||
} else if (displaySize === 'medium') {
|
||||
const firstSet = _getQueryFiltersForValue(
|
||||
filters,
|
||||
['PatientID', 'PatientName'],
|
||||
patientNameOrId
|
||||
);
|
||||
|
||||
const secondSet = _getQueryFiltersForValue(
|
||||
filters,
|
||||
['AccessionNumber', 'StudyDescription', 'ModalitiesInStudy'],
|
||||
accessionOrModalityOrDescription
|
||||
);
|
||||
|
||||
if (firstSet.length || secondSet.length) {
|
||||
queryFiltersArray = firstSet.concat(secondSet);
|
||||
}
|
||||
}
|
||||
|
||||
const queryPromises = [];
|
||||
|
||||
queryFiltersArray.forEach(filter => {
|
||||
const searchStudiesPromise = OHIF.studies.searchStudies(server, filter);
|
||||
queryPromises.push(searchStudiesPromise);
|
||||
});
|
||||
|
||||
const lotsOfStudies = await Promise.all(queryPromises);
|
||||
const studies = [];
|
||||
|
||||
// Flatten and dedupe
|
||||
lotsOfStudies.forEach(arrayOfStudies => {
|
||||
if (arrayOfStudies) {
|
||||
arrayOfStudies.forEach(study => {
|
||||
if (!studies.some(s => s.StudyInstanceUID === study.StudyInstanceUID)) {
|
||||
studies.push(study);
|
||||
}
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
return studies;
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} filters
|
||||
* @param {*} fields - Array of string fields
|
||||
* @param {*} value
|
||||
*/
|
||||
function _getQueryFiltersForValue(filters, fields, value) {
|
||||
const queryFilters = [];
|
||||
|
||||
if (value === '' || !value) {
|
||||
return queryFilters;
|
||||
}
|
||||
|
||||
fields.forEach(field => {
|
||||
const filter = Object.assign(
|
||||
{
|
||||
PatientID: '',
|
||||
PatientName: '',
|
||||
AccessionNumber: '',
|
||||
StudyDescription: '',
|
||||
ModalitiesInStudy: '',
|
||||
},
|
||||
filters
|
||||
);
|
||||
|
||||
filter[field] = value;
|
||||
queryFilters.push(filter);
|
||||
});
|
||||
|
||||
return queryFilters;
|
||||
}
|
||||
|
||||
export default withRouter(StudyListRoute);
|
||||
@ -1,44 +0,0 @@
|
||||
import React, { useContext } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { withRouter } from 'react-router-dom';
|
||||
import ConnectedStudyList from './ConnectedStudyList';
|
||||
import useServer from '../customHooks/useServer';
|
||||
import OHIF from '@ohif/core';
|
||||
const { urlUtil: UrlUtil } = OHIF.utils;
|
||||
|
||||
// Contexts
|
||||
import AppContext from '../context/AppContext';
|
||||
|
||||
function StudyListRouting({ match: routeMatch, location: routeLocation }) {
|
||||
const {
|
||||
project,
|
||||
location,
|
||||
dataset,
|
||||
dicomStore,
|
||||
studyInstanceUIDs,
|
||||
seriesInstanceUIDs,
|
||||
} = routeMatch.params;
|
||||
const server = useServer({ project, location, dataset, dicomStore });
|
||||
const { appConfig = {} } = useContext(AppContext);
|
||||
|
||||
const filters = UrlUtil.queryString.getQueryFilters(routeLocation);
|
||||
|
||||
let studyListFunctionsEnabled = false;
|
||||
if (appConfig.studyListFunctionsEnabled) {
|
||||
studyListFunctionsEnabled = appConfig.studyListFunctionsEnabled;
|
||||
}
|
||||
return (
|
||||
<ConnectedStudyList
|
||||
filters={filters}
|
||||
studyListFunctionsEnabled={studyListFunctionsEnabled}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
StudyListRouting.propTypes = {
|
||||
location: PropTypes.shape({
|
||||
search: PropTypes.string,
|
||||
}).isRequired,
|
||||
};
|
||||
|
||||
export default withRouter(StudyListRouting);
|
||||
Loading…
Reference in New Issue
Block a user