feat(SM): remove SM measurements from measurement panel (#4022)
This commit is contained in:
Alireza
GitHub
parent
77693ddef4
commit
df49a653be
25
.codecov.yml
25
.codecov.yml
@ -1,25 +0,0 @@
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# ABOUT:
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# https://docs.codecov.io/docs/codecov-yaml
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#
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#
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# COMMIT STATUS:
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# https://docs.codecov.io/docs/commit-status
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coverage:
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status:
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project:
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default:
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threshold: 0.5%
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core:
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flags: core
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threshold: 0.5%
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viewer:
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flags: viewer
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threshold: 0.5%
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patch: off
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flags:
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core:
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paths:
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- platform/core
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viewer:
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paths:
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- platform/app
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@ -46,8 +46,8 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^1.70.0",
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"@cornerstonejs/core": "^1.70.0",
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"@cornerstonejs/adapters": "^1.70.5",
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"@cornerstonejs/core": "^1.70.5",
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"@kitware/vtk.js": "30.3.1",
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"react-color": "^2.19.3"
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}
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@ -46,9 +46,9 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^1.70.0",
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"@cornerstonejs/core": "^1.70.0",
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"@cornerstonejs/tools": "^1.70.0",
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"@cornerstonejs/adapters": "^1.70.5",
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"@cornerstonejs/core": "^1.70.5",
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"@cornerstonejs/tools": "^1.70.5",
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"classnames": "^2.3.2"
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}
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}
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@ -42,9 +42,9 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/core": "^1.70.0",
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"@cornerstonejs/streaming-image-volume-loader": "^1.70.0",
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"@cornerstonejs/tools": "^1.70.0",
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"@cornerstonejs/core": "^1.70.5",
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"@cornerstonejs/streaming-image-volume-loader": "^1.70.5",
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"@cornerstonejs/tools": "^1.70.5",
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"classnames": "^2.3.2"
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}
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}
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@ -38,7 +38,7 @@
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"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
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"@cornerstonejs/codec-openjpeg": "^1.2.2",
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"@cornerstonejs/codec-openjph": "^2.4.2",
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"@cornerstonejs/dicom-image-loader": "^1.70.0",
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"@cornerstonejs/dicom-image-loader": "^1.70.5",
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"@icr/polyseg-wasm": "^0.4.0",
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"@ohif/core": "3.8.0-beta.78",
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"@ohif/ui": "3.8.0-beta.78",
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@ -55,10 +55,10 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^1.70.0",
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"@cornerstonejs/core": "^1.70.0",
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"@cornerstonejs/streaming-image-volume-loader": "^1.70.0",
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"@cornerstonejs/tools": "^1.70.0",
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"@cornerstonejs/adapters": "^1.70.5",
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"@cornerstonejs/core": "^1.70.5",
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"@cornerstonejs/streaming-image-volume-loader": "^1.70.5",
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"@cornerstonejs/tools": "^1.70.5",
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"@icr/polyseg-wasm": "^0.4.0",
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"@kitware/vtk.js": "30.3.1",
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"html2canvas": "^1.4.1",
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@ -10,7 +10,7 @@ import {
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utilities as csUtils,
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} from '@cornerstonejs/core';
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import { MeasurementService } from '@ohif/core';
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import { Notification, useViewportDialog, Types as UITypes, AllInOneMenu } from '@ohif/ui';
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import { Notification, useViewportDialog, AllInOneMenu } from '@ohif/ui';
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import { IStackViewport, IVolumeViewport } from '@cornerstonejs/core/dist/esm/types';
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import { setEnabledElement } from '../state';
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@ -114,7 +114,6 @@ const OHIFCornerstoneViewport = React.memo(props => {
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// of the imageData in the OHIFCornerstoneViewport. This prop is used
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// to set the initial state of the viewport's first image to render
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initialImageIndex,
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onReady,
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} = props;
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const viewportId = viewportOptions.viewportId;
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@ -142,7 +141,6 @@ const OHIFCornerstoneViewport = React.memo(props => {
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viewportGridService,
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stateSyncService,
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viewportActionCornersService,
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customizationService,
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} = servicesManager.services as CornerstoneServices;
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const [viewportDialogState] = useViewportDialog();
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@ -203,7 +201,6 @@ const OHIFCornerstoneViewport = React.memo(props => {
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if (onElementEnabled) {
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onElementEnabled(evt);
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onReady?.(evt);
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}
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},
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[viewportId, onElementEnabled, toolGroupService]
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@ -275,16 +275,16 @@ function commandsModule({
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actions.setViewportWindowLevel({ ...props, viewportId });
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},
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setToolEnabled: ({ toolName, toggle }) => {
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setToolEnabled: ({ toolName, toggle, toolGroupId }) => {
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const { viewports } = viewportGridService.getState();
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if (!viewports.size) {
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return;
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}
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const toolGroup = toolGroupService.getToolGroup(null);
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const toolGroup = toolGroupService.getToolGroup(toolGroupId ?? null);
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if (!toolGroup) {
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if (!toolGroup || !toolGroup.hasTool(toolName)) {
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return;
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}
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@ -293,6 +293,8 @@ function commandsModule({
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// Toggle the tool's state only if the toggle is true
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if (toggle) {
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toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
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} else {
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toolGroup.setToolEnabled(toolName);
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}
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const renderingEngine = cornerstoneViewportService.getRenderingEngine();
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@ -15,7 +15,6 @@ import {
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utilities as csUtilities,
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Enums as csEnums,
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} from '@cornerstonejs/core';
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import { utilities } from '@cornerstonejs/tools';
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import {
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cornerstoneStreamingImageVolumeLoader,
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cornerstoneStreamingDynamicImageVolumeLoader,
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@ -35,6 +35,7 @@ import {
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PlanarFreehandROITool,
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SplineROITool,
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LivewireContourTool,
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OrientationMarkerTool,
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} from '@cornerstonejs/tools';
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import CalibrationLineTool from './tools/CalibrationLineTool';
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@ -80,6 +81,7 @@ export default function initCornerstoneTools(configuration = {}) {
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addTool(PlanarFreehandROITool);
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addTool(SplineROITool);
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addTool(LivewireContourTool);
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addTool(OrientationMarkerTool);
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// Modify annotation tools to use dashed lines on SR
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const annotationStyle = {
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@ -132,6 +134,7 @@ const toolNames = {
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SplineROI: SplineROITool.toolName,
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LivewireContour: LivewireContourTool.toolName,
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PlanarFreehandROI: PlanarFreehandROITool.toolName,
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OrientationMarker: OrientationMarkerTool.toolName,
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};
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export { toolNames };
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@ -1,11 +1,10 @@
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import React, { useState, useEffect } from 'react';
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import PropTypes from 'prop-types';
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import { ServicesManager, ExtensionManager, CommandsManager, DicomMetadataStore } from '@ohif/core';
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import { MeasurementTable, Icon, ButtonGroup, Button } from '@ohif/ui';
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import { MeasurementTable } from '@ohif/ui';
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import { withTranslation, WithTranslation } from 'react-i18next';
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import { EVENTS as MicroscopyEvents } from '../../services/MicroscopyService';
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import dcmjs from 'dcmjs';
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import styles from '../../utils/styles';
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import callInputDialog from '../../utils/callInputDialog';
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import constructSR from '../../utils/constructSR';
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import { saveByteArray } from '../../utils/saveByteArray';
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@ -286,6 +285,11 @@ function MicroscopyPanel(props: IMicroscopyPanelProps) {
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props.commandsManager.runCommand('setLabel', { uid }, 'MICROSCOPY');
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};
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const onMeasurementDeleteHandler = ({ uid, isActive }: { uid: string; isActive: boolean }) => {
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const roiAnnotation = microscopyService.getAnnotation(uid);
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microscopyService.removeAnnotation(roiAnnotation);
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};
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// Convert ROI annotations managed by microscopyService into our
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// own format for display
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const data = roiAnnotations.map((roiAnnotation, index) => {
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@ -322,8 +326,6 @@ function MicroscopyPanel(props: IMicroscopyPanelProps) {
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};
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});
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const disabled = data.length === 0;
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return (
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<>
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<div
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@ -336,6 +338,7 @@ function MicroscopyPanel(props: IMicroscopyPanelProps) {
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data={data}
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onClick={onMeasurementItemClickHandler}
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onEdit={onMeasurementItemEditHandler}
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onDelete={onMeasurementDeleteHandler}
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/>
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</div>
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</>
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@ -32,8 +32,8 @@
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"start": "yarn run dev"
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},
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"peerDependencies": {
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"@cornerstonejs/core": "^1.70.0",
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"@cornerstonejs/tools": "^1.70.0",
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"@cornerstonejs/core": "^1.70.5",
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"@cornerstonejs/tools": "^1.70.5",
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"@ohif/core": "3.8.0-beta.78",
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"@ohif/extension-cornerstone-dicom-sr": "3.8.0-beta.78",
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"@ohif/ui": "3.8.0-beta.78",
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@ -3,7 +3,7 @@ import PropTypes from 'prop-types';
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import { Icon, ActionButtons } from '@ohif/ui';
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import { useTranslation } from 'react-i18next';
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export default function PanelRoiThresholdSegmentation({ servicesManager, commandsManager }) {
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const { segmentationService } = servicesManager.services;
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const { segmentationService, uiNotificationService } = servicesManager.services;
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const { t } = useTranslation('PanelSUVExport');
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const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
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@ -36,6 +36,24 @@ export default function PanelRoiThresholdSegmentation({ servicesManager, command
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const tmtvValue = segmentations?.[0]?.cachedStats?.tmtv?.value || null;
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const config = segmentations?.[0]?.cachedStats?.tmtv?.config || {};
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segmentations.forEach(segmentation => {
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const { cachedStats } = segmentation;
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if (!cachedStats) {
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return;
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}
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// segment 1
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const suvPeak = cachedStats?.['1']?.suvPeak?.suvPeak;
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if (Number.isNaN(suvPeak)) {
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uiNotificationService.show({
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title: 'Unable to calculate SUV Peak',
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message: 'The resulting threshold is not big enough.',
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type: 'warning',
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});
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}
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});
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const actions = [
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{
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label: 'Export CSV',
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@ -53,6 +53,7 @@ function modeFactory({ modeConfiguration }) {
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customizationService,
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hangingProtocolService,
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displaySetService,
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viewportGridService,
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} = servicesManager.services;
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const utilityModule = extensionManager.getModuleEntry(
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@ -111,6 +112,19 @@ function modeFactory({ modeConfiguration }) {
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},
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]);
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// This is a hack and we need to find a better way to enable
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// some tools that require the viewport to be ready
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const { unsubscribe: unsub1 } = viewportGridService.subscribe(
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viewportGridService.EVENTS.VIEWPORTS_READY,
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() => {
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commandsManager.run('setToolEnabled', {
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toolName: 'OrientationMarker',
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toolGroupId: 'mipToolGroup',
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});
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unsub1();
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}
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);
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// For the hanging protocol we need to decide on the window level
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// based on whether the SUV is corrected or not, hence we can't hard
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// code the window level in the hanging protocol but we add a custom
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@ -102,7 +102,17 @@ function _initToolGroups(toolNames, Enums, toolGroupService, commandsManager, mo
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bindings: [{ mouseButton: Enums.MouseBindings.Primary }],
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},
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],
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enabled: [{ toolName: toolNames.SegmentationDisplay }],
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enabled: [
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{ toolName: toolNames.SegmentationDisplay },
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{
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toolName: toolNames.OrientationMarker,
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configuration: {
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orientationWidget: {
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viewportCorner: 'BOTTOM_LEFT',
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},
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},
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},
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],
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};
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toolGroupService.createToolGroupAndAddTools(toolGroupIds.MIP, mipTools);
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@ -54,7 +54,7 @@
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"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
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"@cornerstonejs/codec-openjpeg": "^1.2.2",
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"@cornerstonejs/codec-openjph": "^2.4.5",
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"@cornerstonejs/dicom-image-loader": "^1.70.0",
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"@cornerstonejs/dicom-image-loader": "^1.70.5",
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"@emotion/serialize": "^1.1.3",
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"@ohif/core": "3.8.0-beta.78",
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"@ohif/extension-cornerstone": "3.8.0-beta.78",
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@ -340,7 +340,7 @@ function ViewerViewportGrid(props) {
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viewportOptions={viewportOptions}
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displaySetOptions={displaySetOptions}
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needsRerendering={displaySetsNeedsRerendering}
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onReady={() => {
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onElementEnabled={() => {
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viewportGridService.setViewportIsReady(viewportId, true);
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}}
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/>
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@ -37,7 +37,7 @@
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"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
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"@cornerstonejs/codec-openjpeg": "^1.2.2",
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"@cornerstonejs/codec-openjph": "^2.4.2",
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"@cornerstonejs/dicom-image-loader": "^1.70.0",
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"@cornerstonejs/dicom-image-loader": "^1.70.5",
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"@ohif/ui": "3.8.0-beta.78",
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"cornerstone-math": "0.1.9",
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"dicom-parser": "^1.8.21"
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@ -2,11 +2,10 @@ import React from 'react';
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import { ServicesManager } from '@ohif/core';
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import PropTypes from 'prop-types';
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import { useTranslation } from 'react-i18next';
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import { annotation as CsAnnotation } from '@cornerstonejs/tools';
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import MeasurementItem from './MeasurementItem';
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const MeasurementTable = ({ data, title, onClick, onEdit, servicesManager }) => {
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const MeasurementTable = ({ data, title, onClick, onEdit, onDelete, servicesManager }) => {
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servicesManager = servicesManager as ServicesManager;
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const { customizationService, measurementService } = servicesManager.services;
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const { t } = useTranslation('MeasurementTable');
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@ -20,6 +19,7 @@ const MeasurementTable = ({ data, title, onClick, onEdit, servicesManager }) =>
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const onMeasurementDeleteHandler = ({ uid }) => {
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const measurement = measurementService.getMeasurement(uid);
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onDelete?.({ uid });
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measurementService.remove(
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uid,
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{
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@ -189,6 +189,7 @@ export {
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ViewportOverlay,
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WindowLevel,
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WindowLevelMenuItem,
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MeasurementItem,
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InputDoubleRange,
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LabellingFlow,
|
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HeaderPatientInfo,
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@ -197,5 +198,4 @@ export {
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ToolSettings,
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Toolbox,
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InvestigationalUseDialog,
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MeasurementItem,
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};
|
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|
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@ -125,12 +125,12 @@ export {
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WindowLevelMenuItem,
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ImageScrollbar,
|
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ViewportOverlay,
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MeasurementItem,
|
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LabellingFlow,
|
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HeaderPatientInfo,
|
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ToolSettings,
|
||||
Toolbox,
|
||||
InvestigationalUseDialog,
|
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MeasurementItem,
|
||||
LayoutPreset,
|
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} from './components';
|
||||
|
||||
|
||||
48
yarn.lock
48
yarn.lock
@ -1568,13 +1568,13 @@
|
||||
resolved "https://registry.yarnpkg.com/@colors/colors/-/colors-1.5.0.tgz#bb504579c1cae923e6576a4f5da43d25f97bdbd9"
|
||||
integrity sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ==
|
||||
|
||||
"@cornerstonejs/adapters@^1.70.0":
|
||||
version "1.70.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-1.70.0.tgz#e824bc193e4bbcdc33036b9c6aa41a3742cfe469"
|
||||
integrity sha512-Eny4vsutkPo9WMQ+i8h5XxCaSqgg9SEj6nizsygDrYZGpJUmTVjJyTkMfSsO0AuiFRwgaWP+rmnF2323YfHtYA==
|
||||
"@cornerstonejs/adapters@^1.70.5":
|
||||
version "1.70.5"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-1.70.5.tgz#aa1e706a18b1e5d597b1b95bac928ee85b400a33"
|
||||
integrity sha512-Jmxqz8crNx37jSBmlsfAKxKHi4wj0vICPzvCQ3c5F4+rSaEswD3JefHfzrNCk1xMaAGE7hkA7szWNDVCoovDBQ==
|
||||
dependencies:
|
||||
"@babel/runtime-corejs2" "^7.17.8"
|
||||
"@cornerstonejs/tools" "^1.70.0"
|
||||
"@cornerstonejs/tools" "^1.70.5"
|
||||
buffer "^6.0.3"
|
||||
dcmjs "^0.29.8"
|
||||
gl-matrix "^3.4.3"
|
||||
@ -1621,10 +1621,10 @@
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-openjph/-/codec-openjph-2.4.5.tgz#8690b61a86fa53ef38a70eee9d665a79229517c0"
|
||||
integrity sha512-MZCUy8VG0VG5Nl1l58+g+kH3LujAzLYTfJqkwpWI2gjSrGXnP6lgwyy4GmPRZWVoS40/B1LDNALK905cNWm+sg==
|
||||
|
||||
"@cornerstonejs/core@^1.70.0":
|
||||
version "1.70.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-1.70.0.tgz#e4ae043fe720caff26320de44b41b1d5d1bfd884"
|
||||
integrity sha512-tmSY9SPy6VnRYgMSWikDG1Wy4bF0Vg8F/7TfsviA18sKFr9ABlL7MS+fvU9L1e6/6oC7G+wGzBMFvx+krWDt8g==
|
||||
"@cornerstonejs/core@^1.70.5":
|
||||
version "1.70.5"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/core/-/core-1.70.5.tgz#4667c018a22f06e83548d230c55a4c8d6b6630ea"
|
||||
integrity sha512-cqSRLA3V6C1MAQ+S5EQoNdxuTG0c/c8bULZ9XKiZYd9YIY26wDsboDJ9a+vzJWNxw9ZFDW0H0F+zJsIu64a3ig==
|
||||
dependencies:
|
||||
"@kitware/vtk.js" "30.3.1"
|
||||
comlink "^4.4.1"
|
||||
@ -1632,34 +1632,34 @@
|
||||
gl-matrix "^3.4.3"
|
||||
lodash.clonedeep "4.5.0"
|
||||
|
||||
"@cornerstonejs/dicom-image-loader@^1.70.0":
|
||||
version "1.70.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-1.70.0.tgz#c2f51b942b526254197edc86b3c5201bd24c5752"
|
||||
integrity sha512-szV0IdeQ2MdYL30xq5dpCp8tfi+vXjOP3qtKI4ZbNQicuYGTuIxIQYTsHgBdqv2tyC1H7wuIIANv4XbHYbQTyA==
|
||||
"@cornerstonejs/dicom-image-loader@^1.70.5":
|
||||
version "1.70.5"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-1.70.5.tgz#6d41e3ee1df8ba659bb5bc69f660b421cd38d0ad"
|
||||
integrity sha512-j8kNnzv5bE2A8jVEXdDFY1ZXoowNGRRAFCO1FlO0aU7yA3YwRXNAeAerJCRJROxl6E//Bsj2WbjRd+mPXE4JVg==
|
||||
dependencies:
|
||||
"@cornerstonejs/codec-charls" "^1.2.3"
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit" "^1.2.2"
|
||||
"@cornerstonejs/codec-openjpeg" "^1.2.2"
|
||||
"@cornerstonejs/codec-openjph" "^2.4.5"
|
||||
"@cornerstonejs/core" "^1.70.0"
|
||||
"@cornerstonejs/core" "^1.70.5"
|
||||
dicom-parser "^1.8.9"
|
||||
pako "^2.0.4"
|
||||
uuid "^9.0.0"
|
||||
|
||||
"@cornerstonejs/streaming-image-volume-loader@^1.70.0":
|
||||
version "1.70.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-1.70.0.tgz#a8d96abf4b9963e6b30ea86db99c10f63e237dea"
|
||||
integrity sha512-ZeFkKUhDlHAvjM4QGTeIsNvkih87rHS98k2DcIX2nJOilNT7KG8bsd1Clllm6Dq99rQCGGfs0ZLSb3CVLI5JXA==
|
||||
"@cornerstonejs/streaming-image-volume-loader@^1.70.5":
|
||||
version "1.70.5"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-1.70.5.tgz#d6044b4258e28b38c00e8463afef064af85bd3ec"
|
||||
integrity sha512-p7NZBixKRmQtZ4/auUvGEsX78/Xcdb6D5gG+hjk1ScF3d9kX5uafgBMj1aBQuO9WlcU6r7AGdIRy4hfGW+s/2w==
|
||||
dependencies:
|
||||
"@cornerstonejs/core" "^1.70.0"
|
||||
"@cornerstonejs/core" "^1.70.5"
|
||||
comlink "^4.4.1"
|
||||
|
||||
"@cornerstonejs/tools@^1.70.0":
|
||||
version "1.70.0"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-1.70.0.tgz#563e08fb664d92aaf74ef8c0f49322f17e8b90a6"
|
||||
integrity sha512-dj4RuYTMFKEWfi3PIyf3xebAC3lfjsuYD95SunkYRH2sxESd5l6A7Vnzk4cdajGqKeXrDVd6LD/P3dxbu/25bw==
|
||||
"@cornerstonejs/tools@^1.70.5":
|
||||
version "1.70.5"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-1.70.5.tgz#ebf7700516169c8283d44d146e5e995ed42dd1a2"
|
||||
integrity sha512-gIo+JfcduvmxpQSXj3BX0N7IwkQZg9yGhexTToSDPo/kpAs5ju2rbnEK++y7kT5zn+G9blDzz9q1clS+++q90w==
|
||||
dependencies:
|
||||
"@cornerstonejs/core" "^1.70.0"
|
||||
"@cornerstonejs/core" "^1.70.5"
|
||||
"@icr/polyseg-wasm" "0.4.0"
|
||||
"@types/offscreencanvas" "2019.7.3"
|
||||
comlink "^4.4.1"
|
||||
|
||||
Loading…
Reference in New Issue
Block a user