basic pub/sub refresh for tabs from displaysets from dicommetadata
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1892ec2a2a
commit
f87d18936e
@ -12,107 +12,66 @@ function PanelStudyBrowser({
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requestDisplaySetCreationForStudy,
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dataSource,
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}) {
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const currentDisplaySets = DisplaySetService.activeDisplaySets || [];
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// TODO: Deep copy? Or By IDs?
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// TODO: May need to be mapped to a different shape?
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const [displaySets, setDisplaySets] = useState(currentDisplaySets);
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const [activeTabName, setActiveTabName] = useState('primary');
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const [thumbnailImageSrcMap, setThumbnailImageSrcMap] = useState(new Map());
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// Tabs --> Studies --> DisplaySets --> Thumbnails
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const [{ StudyInstanceUIDs }, dispatch] = useImageViewer();
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// vv What we want to render
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const [activeTabName, setActiveTabName] = useState('primary');
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const [studyDisplayList, setStudyDisplayList] = useState([]);
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const [displaySets, setDisplaySets] = useState([]);
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const [thumbnailImageSrcMap, setThumbnailImageSrcMap] = useState(new Map());
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// ~~ studyDisplayList
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useEffect(() => {
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// Fetch all studies for the patient in each primary study
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async function fetchStudiesForPatient(StudyInstanceUID) {
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const qidoStudiesForPatient =
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(await getStudiesForPatientByStudyInstanceUID(StudyInstanceUID)) || [];
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// TODO: This should be "naturalized DICOM JSON" studies
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const mappedStudies = _mapDataSourceStudies(qidoStudiesForPatient);
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const actuallyMappedStudies = mappedStudies.map(qidoStudy => {
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return {
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studyInstanceUid: qidoStudy.StudyInstanceUID,
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date: qidoStudy.StudyDate,
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description: qidoStudy.StudyDescription,
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modalities: qidoStudy.ModalitiesInStudy,
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numInstances: qidoStudy.NumInstances,
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// displaySets: []
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};
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});
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const updatedStudyDisplayList = _mergeStudyDisplayListAndDataSourceStudies(
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studyDisplayList,
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mappedStudies,
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displaySets
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);
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addDisplaySetsToStudyDisplayList(
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updatedStudyDisplayList,
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displaySets,
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thumbnailImageSrcMap
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);
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setStudyDisplayList(updatedStudyDisplayList);
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setStudyDisplayList(actuallyMappedStudies);
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}
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StudyInstanceUIDs.forEach(sid => fetchStudiesForPatient(sid));
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}, [
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StudyInstanceUIDs,
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getStudiesForPatientByStudyInstanceUID,
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]);
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}, [StudyInstanceUIDs, getStudiesForPatientByStudyInstanceUID]);
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const updateThumbnailMap = (displaySetInstanceUID, imageSrc) => {
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setThumbnailImageSrcMap(
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thumbnailImageSrcMap.set(displaySetInstanceUID, imageSrc)
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// ~~ displaySets
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useEffect(() => {
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// TODO: Deep copy? Or By IDs?
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// TODO: May need to be mapped to a different shape?
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// TODO: Iterate over `studyDisplayList` and map these for all studies in list?
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const currentDisplaySets = DisplaySetService.activeDisplaySets || [];
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const mappedDisplaySets = _mapDisplaySets(
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currentDisplaySets,
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thumbnailImageSrcMap
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);
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};
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function setLocalDisplaySetsState(displaySets) {
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const displaySetsUI = displaySets.map(ds => {
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const imageSrc = thumbnailImageSrcMap.get(ds.displaySetInstanceUID);
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return {
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displaySetInstanceUID: ds.displaySetInstanceUID,
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description: ds.SeriesDescription,
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seriesNumber: ds.SeriesNumber,
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modality: ds.Modality,
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date: ds.SeriesDate,
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numInstances: ds.numImageFrames,
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StudyInstanceUID: ds.StudyInstanceUID,
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componentType: 'thumbnail', // 'thumbnailNoImage' || 'thumbnailTracked' // TODO: PUT THIS SOMEWHERE ELSE
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imageSrc,
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dragData: {
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type: 'displayset',
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displaySetInstanceUID: ds.displaySetInstanceUID,
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// .. Any other data to pass
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},
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};
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});
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setDisplaySets(displaySetsUI);
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}
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function addDisplaySetsToStudyDisplayList(
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studies,
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displaySets,
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thumbnailImageSrcMap
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) {
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displaySets.forEach(displaySet => {
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const study = studies.find(
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s => s.studyInstanceUid === displaySet.StudyInstanceUID
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);
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if (!study) {
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return;
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}
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displaySet.imageSrc = thumbnailImageSrcMap.get(
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displaySet.displaySetInstanceUID
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);
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study.displaySets.push(displaySet);
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});
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}
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setDisplaySets(mappedDisplaySets);
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}, [thumbnailImageSrcMap]);
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async function handleDisplaySetsAdded(newDisplaySets) {
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console.warn('~~ handleDisplaySetsAdded');
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// First, launch requests for a thumbnail for the new display sets
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newDisplaySets.forEach(async dset => {
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const uid = dset.displaySetInstanceUID;
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const imageIds = dataSource.getImageIdsForDisplaySet(dset);
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const imageId = imageIds[Math.floor(imageIds.length / 2)];
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// When the image arrives, render it and store the result in the thumbnailImgSrcMap
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const imageSrc = await getImageSrc(imageId);
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updateThumbnailMap(uid, imageSrc);
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setThumbnailImageSrcMap(
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thumbnailImageSrcMap.set(dset.displaySetInstanceUID, imageSrc)
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);
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});
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}
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@ -122,9 +81,21 @@ function PanelStudyBrowser({
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DisplaySetService.EVENTS.DISPLAY_SETS_ADDED,
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handleDisplaySetsAdded
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),
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// TODO: Should this event indicate batch/series/study?
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// Naming feels odd, and result is non-obvious
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// Will this always contain _all_ displaySets we care about?
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DisplaySetService.subscribe(
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DisplaySetService.EVENTS.DISPLAY_SETS_CHANGED,
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setLocalDisplaySetsState
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changedDisplaySets => {
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console.warn('DisplaySetService.EVENTS.DISPLAY_SETS_CHANGED', changedDisplaySets);
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const mappedDisplaySets = _mapDisplaySets(
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changedDisplaySets,
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thumbnailImageSrcMap
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);
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setDisplaySets(mappedDisplaySets);
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}
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),
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];
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@ -133,33 +104,12 @@ function PanelStudyBrowser({
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};
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}, []);
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const primaryStudies = studyDisplayList.filter(study =>
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StudyInstanceUIDs.includes(study.studyInstanceUid)
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const tabs = _createStudyBrowserTabs(
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StudyInstanceUIDs,
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studyDisplayList,
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displaySets
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);
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// TODO: Filter allStudies to dates within one year of current date
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const recentStudies = studyDisplayList.filter(study => {
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return true; // TODO: check study.date
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});
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const tabs = [
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{
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name: 'primary',
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label: 'Primary',
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studies: primaryStudies || [],
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},
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{
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name: 'recent',
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label: 'Recent',
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studies: recentStudies,
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},
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{
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name: 'all',
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label: 'All',
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studies: studyDisplayList,
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},
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];
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// TODO: Should "expand" appropriate study (already handled by component?)
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// TODO: Should not fire this on "close"
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function _handleStudyClick(StudyInstanceUID) {
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@ -214,28 +164,84 @@ function _mapDataSourceStudies(studies) {
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});
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}
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function _mergeStudyDisplayListAndDataSourceStudies(
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studyDisplayList,
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mappedQidoStudies
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) {
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return mappedQidoStudies.map(qidoStudy => {
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const { StudyInstanceUID } = qidoStudy;
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const existing =
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studyDisplayList.find(a => a.studyInstanceUid === StudyInstanceUID) || {};
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return Object.assign(
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{},
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existing,
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{
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displaySets: [],
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function _mapDisplaySets(displaySets, thumbnailImageSrcMap) {
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console.warn('~~ setLocalDisplaySetsState');
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return displaySets.map(ds => {
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const imageSrc = thumbnailImageSrcMap.get(ds.displaySetInstanceUID);
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return {
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displaySetInstanceUID: ds.displaySetInstanceUID,
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description: ds.SeriesDescription,
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seriesNumber: ds.SeriesNumber,
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modality: ds.Modality,
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date: ds.SeriesDate,
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numInstances: ds.numImageFrames,
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StudyInstanceUID: ds.StudyInstanceUID,
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componentType: 'thumbnail', // 'thumbnailNoImage' || 'thumbnailTracked' // TODO: PUT THIS SOMEWHERE ELSE
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imageSrc,
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dragData: {
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type: 'displayset',
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displaySetInstanceUID: ds.displaySetInstanceUID,
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// .. Any other data to pass
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},
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{
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studyInstanceUid: StudyInstanceUID,
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date: qidoStudy.StudyDate,
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description: qidoStudy.StudyDescription,
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modalities: qidoStudy.ModalitiesInStudy,
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numInstances: qidoStudy.NumInstances,
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}
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);
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};
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});
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}
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/**
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*
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* @param {string[]} primaryStudyInstanceUIDs
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* @param {object[]} studyDisplayList
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* @param {string} studyDisplayList.studyInstanceUid
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* @param {string} studyDisplayList.date
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* @param {string} studyDisplayList.description
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* @param {string} studyDisplayList.modalities
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* @param {number} studyDisplayList.numInstances
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* @param {object[]} displaySets
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* @returns tabs - The prop object expected by the StudyBrowser component
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*/
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function _createStudyBrowserTabs(
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primaryStudyInstanceUIDs,
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studyDisplayList,
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displaySets
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) {
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const primaryStudies = [];
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const recentStudies = [];
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const allStudies = [];
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studyDisplayList.forEach(study => {
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const displaySetsForStudy = displaySets.filter(
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ds => ds.StudyInstanceUID === study.studyInstanceUid
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);
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const tabStudy = Object.assign({}, study, {
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displaySets: displaySetsForStudy,
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});
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if (primaryStudyInstanceUIDs.includes(study.studyInstanceUid)) {
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primaryStudies.push(tabStudy);
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} else {
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// TODO: Filter allStudies to dates within one year of current date
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recentStudies.push(tabStudy);
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allStudies.push(tabStudy);
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}
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});
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const tabs = [
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{
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name: 'primary',
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label: 'Primary',
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studies: primaryStudies,
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},
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{
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name: 'recent',
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label: 'Recent',
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studies: recentStudies,
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},
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{
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name: 'all',
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label: 'All',
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studies: allStudies,
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},
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];
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return tabs;
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}
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@ -1,5 +1,5 @@
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import pubSubServiceInterface from '../_shared/pubSubServiceInterface';
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import StudyMetadata from './StudyMetadata';
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import createStudyMetadata from './createStudyMetadata';
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import EVENTS from './EVENTS';
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const _model = {
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@ -57,20 +57,26 @@ function _getInstance(StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID) {
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const BaseImplementation = {
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EVENTS,
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listeners: {},
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// TODO: The assumption is that this is called per Study per Series
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// We should do more to verify/clarify that
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addInstances(instances) {
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const { StudyInstanceUID } = instances[0];
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const { StudyInstanceUID, SeriesInstanceUID } = instances[0];
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let study = _model.studies.find(
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study => study.StudyInstanceUID === StudyInstanceUID
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);
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if (!study) {
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_model.studies.push(new StudyMetadata(StudyInstanceUID));
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_model.studies.push(createStudyMetadata(StudyInstanceUID));
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study = _model.studies[_model.studies.length - 1];
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}
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study.addSeries(instances);
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this._broadcastEvent(EVENTS.INSTANCES_ADDED, {
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StudyInstanceUID,
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SeriesInstanceUID,
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});
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},
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addStudy(study) {
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const { StudyInstanceUID } = study;
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@ -1,6 +1,5 @@
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const EVENTS = {
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DISPLAY_SETS_ADDED: 'event::displaySetService:displaySetsAdded',
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DISPLAY_SETS_CHANGED: 'event::displaySetService:displaySetsChanged',
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INSTANCES_ADDED: 'event::dicomMetadataStore:instancesAdded',
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};
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export default EVENTS;
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@ -1,9 +0,0 @@
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class SeriesMetadata {
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constructor(instances) {
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const { SeriesInstanceUID } = instances[0];
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this.SeriesInstanceUID = SeriesInstanceUID;
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this.instances = instances;
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}
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}
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export default SeriesMetadata;
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@ -1,14 +0,0 @@
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import SeriesMetadata from './SeriesMetadata';
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class StudyMetadata {
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constructor(StudyInstanceUID) {
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this.StudyInstanceUID = StudyInstanceUID;
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this.series = [];
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}
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addSeries(instances) {
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this.series.push(new SeriesMetadata(instances));
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}
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}
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export default StudyMetadata;
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@ -0,0 +1,10 @@
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function createSeriesMetadata(instances) {
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const { SeriesInstanceUID } = instances[0];
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return {
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SeriesInstanceUID,
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instances,
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};
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}
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export default createSeriesMetadata;
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@ -0,0 +1,14 @@
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import createSeriesMetadata from './createSeriesMetadata';
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function createStudyMetadata(StudyInstanceUID) {
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return {
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StudyInstanceUID,
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series: [],
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addSeries: function(instances) {
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const series = createSeriesMetadata(instances);
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this.series.push(series);
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},
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};
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}
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export default createStudyMetadata;
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@ -38,7 +38,6 @@ function DataSourceWrapper(props) {
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const firstAppConfigDataSource = appConfig.dataSources[0];
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const dataSourceConfig = firstAppConfigDataSource.configuration;
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const firstWebApiDataSource = webApiDataSources[0];
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debugger;
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const dataSource = firstWebApiDataSource.createDataSource(dataSourceConfig);
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// Route props --> studies.mapParams
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@ -1,8 +1,8 @@
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import React, { useEffect } from 'react';
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import { useParams } from 'react-router';
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import PropTypes from 'prop-types';
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//
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import { ToolBarManager } from '@ohif/core';
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// TODO: DicomMetadataStore should be injected?
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import { DicomMetadataStore, ToolBarManager } from '@ohif/core';
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import { DragAndDropProvider, ImageViewerProvider } from '@ohif/ui';
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//
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import { useQuery } from '@hooks';
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@ -91,10 +91,31 @@ export default function ModeRoute({
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console.log('queryParams: ', queryParams);
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// Call the data source to start building the view model?
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dataSource.retrieve.series.metadata(
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queryParams,
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DisplaySetService.makeDisplaySets
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// TODO: This should be called on subscription to DicomMetadataStore?
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// dataSource.retrieve.series.metadata(
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// queryParams,
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// DisplaySetService.makeDisplaySets
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// );
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// TODO: This should be baked into core, not manuel?
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// DisplaySetService would wire this up?
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DicomMetadataStore.subscribe(
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DicomMetadataStore.EVENTS.INSTANCES_ADDED,
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({ StudyInstanceUID, SeriesInstanceUID }) => {
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console.warn(`INSTANCES_ADDED::\nStudy:${StudyInstanceUID}\nSeries:${SeriesInstanceUID}`);
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const seriesMetadata = DicomMetadataStore.getSeries(
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StudyInstanceUID,
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SeriesInstanceUID
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);
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DisplaySetService.makeDisplaySets(seriesMetadata.instances);
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}
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);
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StudyInstanceUIDsAsArray.forEach(StudyInstanceUID => {
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dataSource.retrieveSeriesMetadata({ StudyInstanceUID });
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});
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}, [
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mode,
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dataSourceName,
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@ -102,7 +123,8 @@ export default function ModeRoute({
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DisplaySetService,
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extensionManager,
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sopClassHandlers,
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dataSource.retrieve.series,
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StudyInstanceUIDsAsArray,
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dataSource,
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]);
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const reducer = (state, action) => {
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