* Initial pnpm change
* Install/update in pnpm sort of works
* Attempt to fix install
* fix pnpm
* Refactor build process to use RSPack instead of Webpack across multiple extensions and modes. Update package.json scripts for development and production builds, and adjust webpack configuration files to accommodate new plugin imports and settings.
* Update RSPack dependencies to version 2.0.0 across the project, enhancing compatibility and performance. Refactor webpack configuration in multiple extensions and modes to utilize the new library structure for UMD output. Adjust package.json scripts and settings for improved build processes.
* Implement migration guide for OHIF 3.13, detailing the transition from Webpack to Rspack v2, the shift to pnpm workspaces, and the increase in minimum Node.js version to 24. Include new build commands, plugin replacements, and updates to package configurations across the monorepo.
* Fix some dev:fast bugs
* Move netlify to top level and remove webpack builds
* Update version script to deal with lerna missing
* chore(tests): Update multiple screenshot test images for various specs
* feat(screenshot-reviewer): Add screenshot review tool and update package.json scripts
* fix(DICOMSRDisplayTool): Improve actor presence check in viewport
* chore(tests): Update multiple screenshot assets for various specs
* chore(tests): Integrate waitForPaintToSettle and waitForViewportsRendered in multiple specs for improved rendering stability
* chore(tests): Update screenshot assets for SEGHydration and SEGNoHydration specs
* test: update progressive loading screenshots
* jest 30 test fixes for compatibility with pnpm cs3d
* Use correct setDisplaySets instead of setDataId
* fix: Naming change for LegacyVolumeViewport3D
* Update to allow tolerance for contour tests
* update
* fix
* refactor: Replace instanceof checks with utility functions for viewport type validation
* fix: Update createSegmentationForViewport to handle undefined displaySetInstanceUID gracefully
* bun lock
* chore(pnpm): align workspace setup to cornerstone3D and address PR review
- .npmrc / pnpm-workspace.yaml: mirror cs3d (node-linker hoisted,
strict-peer-dependencies=false, link/prefer workspace packages,
minimumReleaseAge, frozenLockfile); sync axios 1.17.0 + tmp override
- root: packageManager pnpm@11.4.0, engines pnpm >=11, wire preinstall.js
- restore preinstall.js (token/private-repo + CLAUDE->AGENTS symlink)
- playwright.yml: keep base CS3D-integration workflow, switch only the
package manager (bun/yarn -> pnpm) and node 20 -> 24
- webpack.base.js: revert prod devtool to source-map (drop hidden-source-map)
- remove @percy/cypress; .netlify + cli templates engines pnpm >=11
- Dockerfile pin pnpm@11; document tests/globalSetup.ts warmup
- drop dicom-sr -> measurement-tracking edge (breaks pnpm cyclic dep)
* chore(pnpm): regenerate lockfile and restore cs3d:* dev scripts
- Regenerate pnpm-lock.yaml against the resolved workspace (cycle removed,
cs3d 4.22.10, workspace:* internal deps).
- Restore cs3d:checkout/check/build/watch/install/link/unlink helper scripts
(dropped when taking the PR's root scripts), converted yarn -> pnpm since
the local cornerstone3D checkout is now pnpm too.
* Merge base branch issues
* Link ohif app
* ci: pin pnpm to 11.4.0 in action-setup (was version: latest)
version: latest floats across runs and breaks reproducibility. Pin to the repo's packageManager version (pnpm@11.4.0) in both playwright and build-docs workflows.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* fix: Accidental commit of .npmrc config
* Fix build issues
* build fix
* Dependency fixes
* fix: Dependency bug in app on extensions/modes
* Fix output configuration
* Replace percy screenshots with native cypress
* Remove percy screenshot entirely
* fix: Build issues
* force click to prevent canvas cover issues
* Enable swiftshader
* Update launch of electron
* fix: Broken size calculation
* Empty change to force a re-build
* fix(cypress): generate ui-next tailwind classes; drop unsupported electron arg
Tailwind only scanned @ohif/ui-next via ../../node_modules/@ohif/ui-next, which no longer resolves under the pnpm layout, so ui-next-unique classes (e.g. toolbar split-button sizing) were never generated. Those buttons' hit-boxes collapsed, producing Cypress 'covered by element' failures on toolbar interactions. Scan ui-next by direct filesystem path like ui/extensions/modes.
Also stop pushing --enable-unsafe-swiftshader into Electron's launchOptions.args (Electron ignores it and warns); it is supplied via ELECTRON_EXTRA_LAUNCH_ARGS in CI. The arg is still pushed for non-electron chromium (local chrome).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(e2e): disable dev-server overlay during coverage runs
The rspack dev-server client overlay injects an iframe (id=rspack-dev-server-client-overlay) that intercepts pointer events, causing Playwright/Cypress clicks on toolbar buttons to time out (e.g. MicroscopyPanel). Disable the overlay when COVERAGE=true (e2e/Playwright webServer) while keeping it for normal local dev.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(microscopy): provide dicom-microscopy-viewer runtime assets
The microscopy viewer is loaded at runtime via peerImport('dicom-microscopy-viewer'), which fetches the copied asset served at /dicom-microscopy-viewer/. Two issues prevented those assets from reaching dist, so the viewer never initialized and drawing produced no measurement row:
1) dicom-microscopy-viewer was declared in no workspace package.json (only under libs/@cornerstonejs), so it was not installed at root node_modules and the pluginConfig copy source did not exist. Declare it (0.48.6, matching libs) in the microscopy extension.
2) createCopyPluginToDist appended the public/dist folder name to entries that specify an explicit directory, breaking the dicom-microscopy-viewer public entry (looked for .../dynamic-import/public). Use an explicit directory as-is; only append the folder name for package-derived entries.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* Update to pnpm 11.5.2 and cs3d 5.0.2
* Lock file
* fix: Update to newer versions of actions to try to fix hang
* Remove unnecessary version
* fix: Tests that are flaky
* PR comments
* Incorrect run name
* docs: Explain pluginConfig tooling
* Updated notes on pluginConfig and PR comments
* fix: resolve plugins in rsbuild build and fix directory-based asset copy
rsbuild.config.ts: merge getPluginResolveAliases() and an @ohif/app$ alias into resolve.alias, and add resolve.modules (root, platform/app, platform/ui node_modules) so extensions resolve their shared @ohif/* imports. Brings the rsbuild (dev:fast) path to parity with webpack.pwa.js / webpack.base.js.
writePluginImportsFile.js: treat a 'directory' on an extension/mode entry as the package root and copy its public/ and dist/ subdirs instead of the whole directory; public-section entries keep copying their directory verbatim via a new literalDirectory flag.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* refactor: share resolve alias/modules between webpack and rsbuild configs
Extract the resolve.alias (@ohif/app, @, @components, ...) and the node_modules search paths into .webpack/resolveConfig.js, the single source of truth consumed by both webpack.base.js (and every per-package webpack.prod/.dev.js that merges it) and rsbuild.config.ts. getModules(srcDir) appends the building package's own source root, preserving the previous per-package behavior. Ends the drift where the rsbuild path kept missing aliases/module paths that webpack.base.js already had.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* Add a timeout on git fetch and avoid all the unnecessary mirrros
* PR comments and tests
* Remove cache to prevent corrupting the cache key/setup.
* Fix stale/corrupted pnpm installer
---------
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* Update to use beta 5.0
* fix: unit tests
* fix: Allow slow server/test rendering to still work
* Update tests to use viewport grid compare
* Fix storage of stale retries actual/diff files
* cs3d linking fixees
* Linking for cs3d metadata
* Use metadata import for suv scaling
* Fix suv import
* Use type for import
* fix: Metadata registration ordering
* Use beta for upstream
* Merge from origin/master
* Revert tests to master
* Undo beta version changes
* Revert bun.lock file to that of master.
* Reduce test failure retries to one per test. Cap the number of failed total tests to 10. Replace the JSON reporter with the HTML reporter.
* Add generic provider back in
* Deprecate OHIF versions of cs3d utils
* fix
* Undo some cs3d beta dependencies so this PR could be merged
* Build fix
* Fixing build issues
* build issue
* bun lock
* Temporary cache clear to resolve build issue
* Cache bust
* Remove the babel hoist fix attempt
* Cache netlify toml issue
* Fix netlify cache issue
* Try to fix cache dependency issue
* Try update resolutions
* babel hoist fix
* fix: Remove netlify cache bust
* Revert pinned versions
* PR comments on duplicated suv-factors
* Undo lock changes and isEqual add
---------
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
fix: Enhance multiframe instance handling and improve instance validation
- Updated `getDisplaySetInfo` to ensure local file frame imageIds resolve correctly, falling back to the source multiframe instance when necessary.
- Improved instance filtering in `isDisplaySetReconstructable` to handle undefined instances more robustly.
- Modified `App` prop types to make `routerBasename` optional and added new props for loading indicators and data sources.
- Refactored `CinePlayer` component to replace Button with a div for better accessibility and interaction.
* fix: A couple of changes to enable cs3d integration build
* Bun update
* fix: Crosshairs tests due to order changes
* Fix a race in DicomTagBrowser.spec.ts and update the comparison for the screenshot for seg hydration.
* Fix sorting issues by using consistent sort
* fix: Inconsistency in scoord loader. Will need an update to screenshot
* Fix crosshairs stability issues and random order issues in Scoord
* Update the comparison image
* Update navigate image
* fix: Axios issue
* Update to current CS3D
- Add FrameOfReferenceUID to SEG and RTSTRUCT displaySet in SOP Class Handlers so the FOR is available for filtering
- Sync optimisticOverlayDisplaySets when background display set changes so the overlay menu reflects the correct state after a background switch
- Add FOR matching guard to the hydrate segmentation synchronizer to prevent the hydration synchronizer from blindly mirroring segmentations from a source viewport to a target viewport if their primary Frames of Reference do not align.
- fix segmentation overlay order reversal on viewport re-render
* fix(SR): Added support for spline and live wire SR items.
* Apply suggestion from @greptile-apps[bot]
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
* Add a script to checkout a worktree for test builds
* fix: Allow download for testing sr validator
* Remove script that wasn't intended to be included
* Bump CS3D version.
* PR comments - simplify code and use single codepath for download
* Allow both download and save buttons for SEG and RTSTRUCT
---------
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix: Detect 16 bit when 8 declared
* Update bun lock with dcmjs changes
* PR comments
* Update package versions
* fix: Palette color lookup table data for dcmjs parsed data
* fix: Published version should match (#5813)
* fix: Published version should match
* Move version number update to package.json
* fix: Netlify version number update
* Try updating platform app vesion too
* PR comments
---------
Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>
* Update latest cs3d
* formatting
* fix: Use 64k instead of 0 for number of entries
* fix: Revert CS3D version to see test issues
* Updated screenshots for ArrowAnnotate.spec.ts.
* Update CS3D version
* fix: Update cs3d 4.17.4
* Update bun lock
* Update bun
* Downgrade to CS3D 4.17.2 to try to release
---------
Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
- add segmentationExists check to getSopClassHandlerModule
- now firing SEGMENTATION_REMOVED and SEGMENTATION_REPRESENTATION_REMOVED events
- centralized segmentation removal in a listener
- when a segmentation is deleted (completely), remove it from all viewports it overlays
- when a segmentation is removed from a viewport, remove it as overlay from the viewport
---------
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(app): move study validation to ModeRoute component
- Moved validation from defaultRouteInit.ts to Mode.tsx
- Added dedicated useEffect hook for study validation
* test: add Playwright test for study not found error page across multiple modes
* fix(ViewportWindowLevel): add null checks for volumeActor in opacity functions
* refactor(ViewportWindowLevel): register histogram worker at module load and optimize scalar data retrieval
* fix(Preclinical4D): add null check for viewportId and set frame rate for cine playback
* fix(getSopClassHandlerModule): handle multiframe dynamic volumes by utilizing metaData for instance retrieval
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix: Initial sort not consistent
* Add better sort criteria
* Remove sorting changes
* Start replacing screen shots
* Update bun lock for version
* Leave default sort for test mode
* fix: Add consistent sorting for same series splits
* PR comments
* docs: add notes for series/display set sort
* Updated example docs
* Update sortVector to be compareSameStudy
* Add unit test
* PR comments
* [WIP] Fix contour annotations RTSS saving
* fix: Export image sop image reference provider
* Fixes for download with filename
* Updates to fix metadata issues with CS3D
* Updates to save menu
* Fixing some additional re-save metadata
* Add support for saving with predecessor image sequence
* PR comment fixes
* fix: Load RTSS after save
* fix segmentation save
* fix load of mixed seg/rt studies
* Use frame module to get information on the frame shown
* Fix study browser to use instances.length when numImageFrames not present
* fix: Load of display set split from multiple non-FOR referenes
* Fix RT and SEG applying to wrong series because of using
referenced series sequence without checkout sop instances
* Fix save seg
* Update to released CS3D versions
* test: Add revokeObjectURL to test download blob
* Add hard dependency on mode-basic to fix build order issues
* fix: build
* Try to fix build segmentation
* PR comments
* PR comment update
* fix to unexpected change from All to recent browser study lists because of the search order for the presence of the study in the tab groups and subsequent reset of the active tab state.
Minor comment in the study browser header.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore Added type annotations and cleaned up stylistically.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* Tighten up a bit of the code to make it easier to follow
* Fix warnings
---------
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
Confirm that Alireza's requested change was included.
* chore: Minor adjustment to generateAcceptHeader function signature to reflect expected return type.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* fix: Added switch to skip the Accept header generation when requesting metadata. WADO metadata request is more likely to return JSON and some VNAs do not like the extra options in the Accept header. Also, passing an empty array is not sufficient because somewhere we still include a comma that breaks the Accept header. It's better to omit it for the metadata request only.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Added new HeadersInterface interface type docstrings.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Refactored getAuthorizationHeader() function signature so it is typed checked. Of course, I upgraded the module to a TypeScript module.
Moved the request header interfaces into its own TypeScript module (RequestHeaders.ts) in the core types.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Refactored the user logic to include a TypeScript interface. As a result, upgraded the source file to TypeScript.
Removed the User interface from RequestHeaders module and moved them to the user module.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Updated function signatures, user import, and confirmed unit tests are passing.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Minor stylistic adjustment to getAuthorizationHeader.test.ts
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore: Added missing comments.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* chore adjusted generateWadoHeader parameter's name and added comment about the expected default header.
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
* Just tweaking the interface a bit to be more consistent.
* fix authorization header signature change
---------
Signed-off-by: Luis M. Santos <luis.santos2@nih.gov>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
