Commit Graph

548 Commits

Author SHA1 Message Date
Joe Boccanfuso
646dd583a2
chore(security and testing): patch sigstore and run Playwright CI on the nashua self-hosted runner for release/3.12 (#6123) 2026-07-07 13:53:57 -04:00
Joe Boccanfuso
f5f086cd95
fix(security): Update dependencies to fix security vulnerabilities. Release 3.12.5 (#6086)
* Update playwright config to output html report and always include video.

* Output playwright html report to results zip.

* Fix MeasurementPanel.spec.ts to use new measurement row locator.
2026-06-17 12:04:45 -04:00
Joe Boccanfuso
62917c2142
fix(security): Update axios to fix security vulnerabilities. Release 3.12.4 (#6064) 2026-06-05 08:45:52 -04:00
Joe Boccanfuso
fb4441ba71
fix(security): Add tmp as a resolution to fix security vulnerability. Trigger release 3.12.3. (#6045) 2026-05-27 10:44:11 -04:00
Joe Boccanfuso
75a24a3393
fix(security): Update various dependencies to fix security vulnerabilities. Release 3.12.2 (#6024) 2026-05-18 09:32:40 -04:00
Joe Boccanfuso
a264413124
fix(security): Patch axios security vulnerabilities. (#5997)
Patch axios security vulnerabilities.
2026-05-06 13:37:37 -04:00
Joe Boccanfuso
bab20143fd
fix(security): Update axios and protobufjs to fix security vulnerabilities. (#5975) 2026-04-23 14:15:16 -04:00
Joe Boccanfuso
946735bf90
fix(security):Update yarn.lock that was missed in PR #5937. (#5939) 2026-04-03 13:16:47 -04:00
Joe Boccanfuso
a5be4c3dce
fix(security): update dependencies to fix security vulnerabilities (#5937) 2026-04-02 18:06:35 -04:00
Joe Boccanfuso
171ea857cf
fix(security): Bump flattened version to address CVE-2026-32141 for release 3.12 (#5898) 2026-03-13 15:25:55 -04:00
Joe Boccanfuso
9754fc1e92
fix(security): Bump tar version to address CVE-2026-31802 in release/3.12 (#5896) 2026-03-13 08:49:13 -04:00
Joe Boccanfuso
6772deb4c6
fix(security): Bump svgo and tar to fix vulnerabilities in release 3.12 (#5881) 2026-03-06 08:26:16 -05:00
Joe Boccanfuso
1d0a8744b2
fix(security): Address various security vulnerabilities in the release/3.12 branch (#5872) 2026-03-04 14:54:17 -05:00
Joe Boccanfuso
51d267e707
fix(security): CVE-2026-27212 and CVE-2026-26996 addressed for release/3.12 (#5831)
* fix(security):  CVE-2026-27212 patched.
Various dependency updates as a result of CVE-2026-26996.
Ultimately CVE-2026-26996 was ignored because it is only exposed in itk-wasm via CLI and OHIF's other use of minimatch is limited to build/dev environments.

* Switched to eslint 9.39.3 for compatibility with .eslintrc.json.
2026-02-23 14:51:42 -05:00
Joe Boccanfuso
c5c18f9516
fix(security): Bump tar to 7.5.9 and lerna to 9.0.4 to fix CVE-2026-26960. (#5825)
* fix(security): Bump tar to 7.5.9 and lerna to 9.0.4 to fix CVE-2026-26960.
Bump sharp to 0.34.5 to fix tar-fs vulnerabilities.

* Update node version to 20.19.0 in circleci config. Needed for lerna and cypress tests.

* Now installing bun for cypress tests in circleci config.

* Use node version 20.19.0 in netlify config.
2026-02-18 16:52:57 -05:00
Joe Boccanfuso
213a0974bb
chore(deps): bump webpack from 5.95.0 to 5.105.0 to address CVE-2025-68458 and CVE-2025-68157 (#5822) 2026-02-18 12:31:13 -05:00
Joe Boccanfuso
49ea3ac82b
chore(deps): bump diff to 5.2.2 to path CVE-2026-24001 (#5812) 2026-02-11 09:39:32 -05:00
Joe Boccanfuso
99736b6437
chore(deps): bump lodash and lodash-es from 4.17.21 to 4.17.23 to address CVE-2025-13465 (#5803) 2026-02-10 14:28:08 -05:00
Joe Boccanfuso
7fb67d2396
fix(security): Use a resolution for axios to address CVE-2026-25639. (#5794) 2026-02-09 16:44:12 -05:00
Bill Wallace
48f2f6fb13
fix(HistoryMemo): Segmentation delete wasn't remembered (#5775)
Will address a few more comments in a separate PR released after this one into 3.13

* fix(HistoryMemo): Segmentation delete wasn't remembered

* Temporary add of package.json linking

* fix: Use newer dcmjs version and delete segmentation with history cs3d
2026-02-05 11:49:49 -05:00
Joe Boccanfuso
512aa3b07f
fix(jump-to-label-map): Use undefined for viewportId for arrow navigation. (#5774)
* Update to CS3D 4.15.28.
2026-02-04 16:12:41 -05:00
Joe Boccanfuso
9a97095d5c
chore(deps): Update cornerstonejs dependencies to 4.15.24. (#5764) 2026-01-30 13:53:28 -05:00
Joe Boccanfuso
06612fe177
fix(TMTV): Consider blend mode when adding segmentation representations. OHIF-2416, OHIF-2369 (#5735)
* Updated screenshots for failing tests due to FOV improvements.

---------

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2026-01-27 08:47:29 -05:00
Joe Boccanfuso
4a1f509865
fix(microscopy): Update microscope to 0.48.17 to fix a measurement exception. (#5710)
* Added documentation for locally linking dicom-microscopy-viewer.
2026-01-15 21:24:31 -05:00
Joe Boccanfuso
612ced0ea1
chore(deps): update CS3D to 4.15.9 to fix OHIF issues 5656 and 5639. (#5714) 2026-01-14 16:48:55 -05:00
Joe Boccanfuso
82e6a18735
fix(segmentation): List surface representations in the segmentation table for 3D views. (#5700)
This was done by using an array of representation types instead of a single type for a panel.
The first element of the array is the primary type of the panel, and the rest are secondary types
that can also be displayed in the panel.

PR feedback:
- added test to check number of segments in side panel for 3D only view
- fixed jumping to segment in 3D only view
- fixed exception when adding contour segment in 3D only view
2026-01-13 15:57:44 -05:00
Joe Boccanfuso
aba4855276
fix(segmentation): Update cornerstone dependencies to fix a segmentation exception after capture. (#5701) 2026-01-12 07:29:04 -05:00
dependabot[bot]
00d04162b2
chore(deps): bump react-router from 6.30.1 to 6.30.3 (#5704) 2026-01-09 14:53:01 -05:00
Joe Boccanfuso
6931c6b7fa
chore(deps): update cs3d dependencies (#5688) 2026-01-05 13:51:23 -05:00
Joe Boccanfuso
ca364a3af7
fix(security): update qs package to fix vulnerability CVE-2025-15284 (#5686)
fixes: qs's arrayLimit bypass in its bracket notation allows DoS via memory exhaustion
2026-01-05 12:23:34 -05:00
Joe Boccanfuso
3440f66ebd
fix(segmentation): Update cornerstone dependencies to fix segment visibility issue. (#5664) 2025-12-18 13:35:29 -05:00
Belbin-GK
658994c854
fix: prevent annotation from appearing in active viewport when switching series with different Frame of Reference UID (#5630)
* fix: prevent annotation from appearing in active viewport when switching series with different Frame of Reference UID

* refactor: extract viewport update strategies

* Update version and use nearest orientation viewport

---------

Co-authored-by: trenser-belbin <belbin.kunjumon@prenuvo.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2025-12-18 12:02:52 -05:00
Alireza
2de81efa7e
fix: preclinical mode not working (#5631)
* fix(ViewportWindowLevel): add null checks for volumeActor in opacity functions

* refactor(ViewportWindowLevel): register histogram worker at module load and optimize scalar data retrieval

* fix(Preclinical4D): add null check for viewportId and set frame rate for cine playback
2025-12-15 21:15:11 -05:00
Bill Wallace
4471416c30
fix: sculptor tool fixes (#5595)
Note: FOSSA check is invalid, but we don't have the ignore FOSSA version included.

* fix: sculptor tool fixes

* Add yarn

* update vtk.js version as well to match
2025-12-02 09:49:09 -05:00
Bill Wallace
57205703bb
Fix contour annotations RTSS saving (#5545)
* [WIP] Fix contour annotations RTSS saving

* fix: Export image sop image reference provider

* Fixes for download with filename

* Updates to fix metadata issues with CS3D

* Updates to save menu

* Fixing some additional re-save metadata

* Add support for saving with predecessor image sequence

* PR comment fixes

* fix: Load RTSS after save

* fix segmentation save

* fix load of mixed seg/rt studies

* Use frame module to get information on the frame shown

* Fix study browser to use instances.length when numImageFrames not present

* fix: Load of display set split from multiple non-FOR referenes

* Fix RT and SEG applying to wrong series because of using
referenced series sequence without checkout sop instances

* Fix save seg

* Update to released CS3D versions

* test: Add revokeObjectURL to test download blob

* Add hard dependency on mode-basic to fix build order issues

* fix: build

* Try to fix build segmentation

* PR comments

* PR comment update
2025-11-21 13:07:26 -05:00
Joe Boccanfuso
5c17c262ea
fix(SegmentationStyle): Fix inactive contour visibility and styling. (#5563)
* Opacity, fill and outline properties for active and inactive contours
are now consistent with those for label map segmentations.
The properties for inactive segmentations are applied to BOTH
inactive contours and label maps.

* Activate the selected segmentation for a type when the alpha, outline width, or fill/outline visibility is changed.
2025-11-19 17:55:53 -05:00
Joe Boccanfuso
834ae3c762
fix(interpolation): Auto accept interpolation when the interpolation process is completed. (#5555)
* Update Cornerstone3D packages to 4.9.1.
2025-11-11 08:19:45 -05:00
Vinícius Alves de Faria Resende
29bd87c8c0
fix(SegmentationTools): [Bug] Changes of brush/eraser radius with hotkey do not reflect on segmentation tool (#5535) 2025-11-05 10:34:41 -05:00
Joe Boccanfuso
000e42e9a6
fix(security): Exact versioning and docs dependabot alerts (#5536) 2025-10-30 16:04:19 -04:00
Vinícius Alves de Faria Resende
76f7d4e23a
fix(3DSegmentation): [Bug] The viewports become blank when loading the seg file in advanced layout after closing the seg file from any other advanced layout (#5505) 2025-10-28 08:52:12 -04:00
Joe Boccanfuso
1f11c83006
fix(security): Addressed dependabot alert CVE-2025-59288 concerning playwright (#5527) 2025-10-27 15:16:43 -04:00
Ibrahim
a1544432db
feat(jpeg2000): Add 16-bit RGB support to JPEG2000 decoder (#5519) 2025-10-23 09:11:54 -04:00
Bill Wallace
503780247c
fix: Pass the correct sop uid + frame for rehydration to prevent associating rehydrated measurements with the wrong data (#5506)
* fix: [#2404] by passing the right sop uid map

* Update PR with requried CS3D fixes

* Update to released versions - had wrong release number
2025-10-20 11:23:26 -04:00
Joe Boccanfuso
170e860aa1
fix(segmentation): Lock all rehydrated segmentation segments when panelSegmentation.disableEditing is true. (#5503)
* fix(segmentation): Lock all rehydrated segmentation segments when panelSegmentation.disableEditing is true.

* PR feedback.

* PR feedback.

* Added tests for disableEditing and utilities for simulating drag operations.

* Update bun.lock file after merging master.
2025-10-17 22:14:31 -04:00
Joe Boccanfuso
c7d2017f08
fix(security): Use exact versioning for dependencies in package.json files. (#5494)
Added bun audit security check in build process.
Removed bun caching.
2025-10-14 16:23:36 -04:00
Joe Boccanfuso
efe97cd01d
chore(deps): Update cornerstone3D dependencies. (#5479) 2025-10-09 16:51:34 -04:00
Joe Boccanfuso
84f27593a0
chore(deps): Update Cornerstone 3D to 4.5.3. (#5473) 2025-10-08 10:30:27 -04:00
Joe Boccanfuso
377d5e2fb6
chore(deps): Update cornerstone dependencies. (#5470) 2025-10-07 19:18:10 -04:00
Bill Wallace
9ad0d7fc8c
feat: Add inherit from basic/longitudinal modes (#5435)
Co-authored-by: Ibrahim <ibrahim.mdev@gmail.com>
2025-10-01 14:31:26 -04:00
Joe Boccanfuso
a46b00f76b
chore(deps): Update cornerstone3D to 4.3.14. (#5450) 2025-09-30 15:07:13 -04:00