Commit Graph

451 Commits

Author SHA1 Message Date
ohif-bot
2d8400f9d8 chore(version): Update package versions [skip ci] 2023-06-19 14:10:15 +00:00
ohif-bot
e12242a15c chore(version): version.json [skip ci] 2023-06-19 14:10:11 +00:00
ohif-bot
a34a0b1a3a chore(version): Update package versions [skip ci] 2023-06-19 13:47:55 +00:00
ohif-bot
e1545b67da chore(version): version.json [skip ci] 2023-06-19 13:47:52 +00:00
ohif-bot
242beb7b46 chore(version): Update package versions [skip ci] 2023-06-19 13:39:11 +00:00
ohif-bot
c5d4e97115 chore(version): version.json [skip ci] 2023-06-19 13:39:07 +00:00
ohif-bot
971c594791 chore(version): Update package versions [skip ci] 2023-06-19 13:22:44 +00:00
ohif-bot
c55136f55e chore(version): version.json [skip ci] 2023-06-19 13:22:41 +00:00
ohif-bot
c75c6af22f chore(version): Update package versions [skip ci] 2023-06-19 13:09:00 +00:00
ohif-bot
3c777ba58b chore(version): version.json [skip ci] 2023-06-19 13:08:56 +00:00
ohif-bot
652e61a417 chore(version): Update package versions [skip ci] 2023-06-15 17:08:06 +00:00
ohif-bot
48bcdd6b50 chore(version): version.json [skip ci] 2023-06-15 17:08:01 +00:00
ohif-bot
3dce70e624 chore(version): Update package versions [skip ci] 2023-06-13 12:59:35 +00:00
ohif-bot
1d00893c49 chore(version): version.json [skip ci] 2023-06-13 12:59:31 +00:00
ohif-bot
a6d967a37e chore(version): Update package versions [skip ci] 2023-06-13 02:41:20 +00:00
ohif-bot
f23a4500f5 chore(version): version.json [skip ci] 2023-06-13 02:41:17 +00:00
ohif-bot
a74e5a733f chore(version): Update package versions [skip ci] 2023-06-13 02:12:34 +00:00
ohif-bot
9326c4fffc chore(version): version.json [skip ci] 2023-06-13 02:12:31 +00:00
ohif-bot
cd1d097957 chore(version): Update package versions [skip ci] 2023-06-12 18:34:02 +00:00
ohif-bot
866647ae79 chore(version): version.json [skip ci] 2023-06-12 18:33:58 +00:00
Joe Boccanfuso
694b4a3f4d
chore(version): update cornerstone version (#3468) 2023-06-12 14:23:49 -04:00
ohif-bot
0e52169677 chore(version): Update package versions [skip ci] 2023-06-08 17:33:51 +00:00
ohif-bot
b23cbc34dd chore(version): version.json [skip ci] 2023-06-08 17:33:48 +00:00
ohif-bot
ca07ef2928 chore(version): Update package versions [skip ci] 2023-06-07 13:40:47 +00:00
ohif-bot
48aa945839 chore(version): version.json [skip ci] 2023-06-07 13:40:43 +00:00
ohif-bot
655ccd310e chore(version): Update package versions [skip ci] 2023-06-07 13:13:40 +00:00
ohif-bot
20275d7d08 chore(version): version.json [skip ci] 2023-06-07 13:13:36 +00:00
ohif-bot
9ee13860a2 chore(version): Update package versions [skip ci] 2023-06-07 12:38:24 +00:00
ohif-bot
f43e45ab1a chore(version): version.json [skip ci] 2023-06-07 12:38:21 +00:00
ohif-bot
ffaffbdfa3 chore(version): Update package versions [skip ci] 2023-06-07 01:54:54 +00:00
ohif-bot
de35860ba6 chore(version): version.json [skip ci] 2023-06-07 01:54:51 +00:00
ohif-bot
6d7561946b chore(version): Update package versions [skip ci] 2023-06-06 21:47:27 +00:00
ohif-bot
fd8a9599d7 chore(version): version.json [skip ci] 2023-06-06 21:47:23 +00:00
ohif-bot
ef9363e8b9 chore(version): Update package versions [skip ci] 2023-06-06 20:11:21 +00:00
ohif-bot
77a8447ceb chore(version): version.json [skip ci] 2023-06-06 20:11:17 +00:00
Alireza
828690cd3b
chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Joe Boccanfuso
685520acab
feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Joe Boccanfuso
c0fd4416ed
fix(Measurement): fixed line dashing of measurements in various scenarios (#3407)
* fix(Measurement): fixed line dashing of measurements in various scenarios

For a StackViewport simply rely on the SeriesInstanceUID being part of the
tracked measurements or not.

For a VolumeViewport first check the image id of the current image in the viewport
and then check the SeriesInstanceUID (like for a StackViewport) if an id is returned.
To reliably get the id of the current image, listen for the VOLUME_VIEWPORT_NEW_VOLUME event.

* Changes for PR comments.
2023-05-18 20:59:33 -04:00
Alireza
f1c0581313
fix(thumbnail): it was commented out by mistake (#3403) 2023-05-17 14:13:19 -04:00
Alireza
1881ce5cbc
feat(custom displayOptions): add custom options to every level of hp (#3372)
* feat(custom displayOptions): add custom options to every level of hanging protocols

* move set preset down to cornerstone3d

* works

* fix tmtv based on new api

* fix unit test

* close

* review1

* upgrade packages

* update packages

* apply review comments

* recursive call

* less copy

* apply review comments

* fix e2e tests

* apply review comments

* revert

* apply review comments

* apply review comments

---------

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2023-05-16 13:07:37 -04:00
Joe Boccanfuso
045e54aa02
fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined (#3392)
* fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined

* Updated cornerstone3d packages

* Fixed code comment.

* Removed unused imports.
2023-05-16 10:02:10 -04:00
Bill Wallace
d5c5951e57
fix(SR): KO series being displayed in browser list (#3382)
* fix: KO series being displayed in browser list

* fix sr for volume viewports

* move highlight labelmap to RAF

* remove commented code

* fix the hydration bug for the SR

* apply review comments

* revert the key images for sr

* Remove some obsolete changes

* set initial image for sr instead of jump

* Remove viewportType stack

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-05-15 08:23:13 -04:00
Joe Boccanfuso
4172d0427b
fix(Measurements): in MeasurementService keep a separate set of unmapped measurements (#3385)
* fix(Measurements): return {} instead of undefined for getSOPInstanceAttributes

* PR feedback:
- separated measurements from non-acquisition plane
- reverted to previous behaviour of returning undefined in getSOPInstanceAttributes

* Added unit tests for unmapped measurements.

* PR feedback: added comments to the unmappedMeasurement used in the unit tests.
2023-05-12 16:24:00 -04:00
Alireza
84cb709b44
feat(panel and auth): fix study panel to not rely on priors and add token param to url (#3381)
* fix: multiframe

* fix the unnecessary use of prior since some servers dont like it

* add authentication via token in url

* add data citation

* add resources

* upgrade packages

* yarn lock

* apply review comments
2023-05-11 10:01:33 -04:00
Alireza
969e7698fa
chore(bump cs3d): bump package and add caching to webpack (#3353)
* chore(bump cs3d): bump package and add caching to webpack

* remove test for now
2023-05-03 12:30:02 -04:00
Alireza
ef24d89930
fix(HangingProtocolService): Add callback property & update description (#3349)
The description for the numberOfDisplaySetsWithImages property was corrected. The update also involves adding a callback property that returns several objects (matchedViewports, viewportMatchDetails, displaySetMatchDetails) and returning them from the method 'findViewportProtocols'. The refactored code also has better readability.
2023-05-02 13:31:51 -04:00
Bill Wallace
b5b936b53e
fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Joe Boccanfuso
66f6e3eade
feat(DICOM Upload): Added new DICOM upload dialogue launched from the worklist page (#3326)
* feat(DICOM Upload)
OHIF #3297
- DicomWebDataSource.store.dicom now accepts an ArrayBuffer of data sets to store
- DicomWebDataSource.store.dicom now also accepts optional callbacks to track upload and an AbortSignal object to cancel upload
- Added DicomFileUploader class that performs and tracks the upload of a DICOM file
- Added various UI pieces for the upload: DicomUpload, DicomUploadProgress, DicomUploadProgressItem
- ProgressLoadingBar was extracted from LoadingIndicatorProgress so it can be reused
- Modal dialogues can now optionally prevent an outside click from closing the Modal

* Passing an XMLHttpRequest to the dataSource.store.dicom method instead of callbacks and AbortSignal.
Cleanup of various UI pieces to minimize code and increase readability.

* Made the DicomUpload component a customization module exported by the cornerstone extension.

* Exposed a copy of the data source configuration via the IWebApiDataSource interface.
Added dicomUploadEnabled to a data source's configuration.

* Code clean up.

* Upgraded the dicomweb-client version to one that provides the ability to
pass a custom HTTP request. DICOM upload uses that custom HTTP request
to track progress and cancel requests.

* Distinguished between failed and cancelled uploads.

* Allow no selection in the upload dialogue.
Fixed the styling of various progress information so that everything aligns.

* Switched from cornerstone wado image loader to cornerstone dicom image loader for DICOM upload.

* Added special cancelled icon to differentiate from failed.

* Added a bit of spacing between the upload progress bar and percentage.

* Fixed minor issue with upload rejection.

* Performance improvement for cancel all uploads:
- use React memo for each upload item progress (row)
- do not await each request of a cancel all

* Fixed various padding/spacing for the DICOM upload drop zone component.
Changed the border dashing for the DICOM upload drop zone to be a background image gradient.
Added hover and active effects to the 'Cancel All Uploads' text.
2023-04-28 16:13:47 -04:00
Alireza
c9d3c08cb6
feat(cst): Add new command to get nearby annotation tools (#3327)
* feat(cst): Add new command to get nearby annotation tools
This commit adds a new command `getNearbyAnnotation` to the `commandsModule.ts` file that identifies nearby annotation tools excluding Crosshairs and ReferenceLines. It also removes an unused mapping to `Crosshairs` in `initMeasurementService.js` and changes the command run in `findNearbyToolData.ts` to `getNearbyAnnotation`.

* perf(cornerstone): Improve performance by optimizing tools

Removes unnecessary imports to improve app's performance. Changes how annotations are detected on the `commandsModule.js` file by fetching the `isAnnotation` property of the tool instance if available. Updates `CrosshairsTool` and `ReferenceLinesTool` to not be annotations anymore. Adjusts the `localhost` URL ports for the `dcm4chee-arc` service interface on `local_dcm4chee.js` to allow for more efficient server communication.

* feat(cornerstone): Add CornerstoneServices type and ToolGroupService.getToolGroup to get tool group by ID or active viewport

This commit introduces the new CornerstoneServices interface to the code and adds the ToolGroupService.getToolGroup method, which can retrieve a specific tool group by ID or from the active viewport. The older _getToolGroup method has also been removed from commandsModule. When no tool group ID is provided, this method now retrieves the tool group from the currently active viewport with the help of getActiveViewportEnabledElement. Additionally, the required reference to @ohif/core has been removed.
2023-04-28 10:14:14 -04:00
M.D
075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00