Commit Graph

520 Commits

Author SHA1 Message Date
Sofien-Sellami
04ca10d877
fix(react-select): update react select package (#3622) 2023-09-22 15:48:12 -04:00
Joe Boccanfuso
85c899b399
feat(SidePanel): new side panel tab look-and-feel (#3657) 2023-09-22 15:36:44 -04:00
Alireza
48bbd6281a
feat(segmentation mode): Add create, and export SEG with Brushes (#3632) 2023-09-22 10:23:44 -04:00
Yaroslav Halchenko
11ca5b6eae
docs(spelling): Add codespell config + github action, run and fix a good number of typos (#3645) 2023-09-12 07:40:38 -04:00
Salim Kanoun
dd6a8812d1
export(checkbox): add missing checkbox export (#3629) 2023-09-06 09:46:01 -04:00
M.D
69115da06d
feat(ImageOverlayViewerTool): add ImageOverlayViewer tool that can render image overlay (pixel overlay) of the DICOM images (#3163)
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-09-06 09:24:17 -04:00
Alireza
9045ddaedc
chore(prettier): full repo linting and code reformatting once and for all (#3627) 2023-09-01 16:19:39 -04:00
Alireza
4c6ff873e8
feat(grid): remove viewportIndex and only rely on viewportId (#3591)
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2023-08-30 16:46:55 -04:00
Joe Boccanfuso
a336992971
feat(cloud data source config): GUI and API for configuring a cloud data source with Google cloud healthcare implementation (#3589) 2023-08-25 14:19:17 -04:00
Joe Boccanfuso
0f9b36906f
feat(thumbnail highlight): Thumbnails of hydrated series are now highlighted (#3594) 2023-08-16 12:51:26 -04:00
rodrigobasilio2022
f845f87716
feat(handler): Add handler for unsupported sopclassUIDs (#3601) 2023-08-16 11:37:28 -04:00
rodrigobasilio2022
3c4795d8cb
feat(read-only config): read only ui for SEG/RT/SR (#3586) 2023-08-16 10:26:28 -04:00
Bill Wallace
53c16b928f
feat(hp priors): Study comparison hanging protocol (#3579) 2023-08-16 10:15:12 -04:00
rodrigobasilio2022
5302e5b62b
feat(Thumbnail): Display set messages support & displaying of series inconsistencies in the thumbnail (#3499)
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
2023-08-11 19:16:25 -03:00
Alireza
5d435424e2
lint(curly): consistent use of curly brackets in codebase (#3584) 2023-08-09 10:07:33 -04:00
Alireza
8adf663248
fix(state synchronization): SEG and RT viewports should keep their before hydration voi (#3560) 2023-08-09 08:08:23 -04:00
Alireza
156c1ba60b
perf(segmentation): make segmentation read 3x faster (#3577) 2023-08-08 14:39:31 -04:00
Alireza
d8f628b125
fix(rerendering): reduce the re-rendering of the viewport grid (#3558) 2023-07-26 11:34:50 -04:00
Bill Wallace
d5cbbb037d
Fix the wrong aspect ratio load (#3534) 2023-07-19 15:21:19 -04:00
Bill Wallace
030e1e4104
chore(test): Integration test wait until rendered/queried instead of timed (#3540) 2023-07-19 09:41:47 -04:00
Sofien-Sellami
5ab74f5020
ui(InputNumber): adding label element in InputNumber Component and … (#3501) 2023-07-07 11:30:52 -04:00
Joe Boccanfuso
ed44ad7f4b
fix(segmentation): Use the series description for the segmentation label (#3517) 2023-07-04 14:39:39 -04:00
Joe Boccanfuso
cc73f15c8c
fix(Button): redesign of existing Button component for consistency (#3473) 2023-06-15 12:58:21 -04:00
Bruno Alves de Faria
874260340a
fix(storybook): Fixing broken UI Storybook components' pages (#3455) 2023-06-07 09:05:35 -04:00
Joe Boccanfuso
da5c32bce3
fix(modal and dialogues): fixes as per specifications (#3438)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-06-07 08:31:09 -04:00
Alireza
eb1550536c
chore(build): update the beta version [BUMP BETA] 2023-06-06 21:47:51 -04:00
Alireza
828690cd3b
chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Alireza
c7bcf1134d
fix(staticwado): SM and RT and update the server with new data (#3422)
* fix bugs for the RT for the new demo

* fix SM with the static-wado server

* remove thumbnail from tmtv

* migration guide

* fix stability for the rt struct

* apply review comments

* add loading indicator to SM

* pdf works

* try to fix relative bulkData

* fix the rest

* fix preflight for the SM

* fix typo

* apply review comments

* yarn lock
2023-05-29 09:04:49 -04:00
Igor Octaviano
b684d80426
fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering (#3306)
* fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering

* Added a progress indicator when switching to a list of more than 1000 rows.

* Switched to using react-window to virtualize the dicom tag browser window.

* Added filtering to the DICOM tag browser with a new search UI widget.
Lots of tweaks and updates to the look-and-feel.

* Removed unused import.

* PR feedback including some UI tweaks.

* More PR feedback.

---------

Co-authored-by: Igor Octaviano <igor.octaviano@radicalimaging.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-05-26 11:42:25 -04:00
M.D
217b330d7b
fix(request): Cross origin issue with fetching image and video (#3416)
* Cross origin issue when
- rendering thumbnails from prerendered url
- playing videos

* empty commit to trigger CI/CD check

* empty commit to trigger CI/CD check
2023-05-26 08:32:00 -04:00
Joe Boccanfuso
685520acab
feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Joe Boccanfuso
052653f3b2
fix(Image Download): various bug fixes for image download (#3396)
- prevent non-cornerstone viewports from showing the image download dialogue
- passing the rendering engine id to ToolGroup.addViewport
- fixed the keep/dismiss aspect feature
2023-05-16 14:50:34 -04:00
Alireza
4fd81b5cd2
fix(local): fix modalities not showing in local (#3388)
* fix various bugs

* revert back docusaurus for styling issues
2023-05-12 15:04:19 -04:00
Joe Boccanfuso
cba57a1b65
fix(UI): fixed results per page select menu (#3384) 2023-05-11 09:52:32 -04:00
Joe Boccanfuso
8eaa1877fd
fix(DICOM PDF and Video): fixes for local DICOM load and remote data sources (#3374)
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI

* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.

* Fixed broken e2e tests.
2023-05-10 12:42:48 -04:00
Joe Boccanfuso
0eda151418
fix(UI) - fixed the spacing and positioning of the close button in the SnackbarItem component (#3380) 2023-05-10 09:07:17 -04:00
Alireza
2f355fa158
fix(cli): better support for external modules and toolGroups in templates (#3364)
* choe(modes, components): improved readability

This commit includes changes to improve performance in the basic-dev-mode and Thumbnail components.
Additionally, a change in the webpack configuration file was made to ignore ".min.js.map" files.
The defaultDataSourceName was also added to several configuration files, and whiteLabeling code was removed
from the local_orthanc configuration file.

* fix(cli): better path management and add dependencies

* better docs

* add default tool group to the templates

* add review comments

* apply review comments

* try to fix test

* fix thumbnail in tests
2023-05-08 15:49:28 -04:00
Bill Wallace
b5b936b53e
fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Joe Boccanfuso
66f6e3eade
feat(DICOM Upload): Added new DICOM upload dialogue launched from the worklist page (#3326)
* feat(DICOM Upload)
OHIF #3297
- DicomWebDataSource.store.dicom now accepts an ArrayBuffer of data sets to store
- DicomWebDataSource.store.dicom now also accepts optional callbacks to track upload and an AbortSignal object to cancel upload
- Added DicomFileUploader class that performs and tracks the upload of a DICOM file
- Added various UI pieces for the upload: DicomUpload, DicomUploadProgress, DicomUploadProgressItem
- ProgressLoadingBar was extracted from LoadingIndicatorProgress so it can be reused
- Modal dialogues can now optionally prevent an outside click from closing the Modal

* Passing an XMLHttpRequest to the dataSource.store.dicom method instead of callbacks and AbortSignal.
Cleanup of various UI pieces to minimize code and increase readability.

* Made the DicomUpload component a customization module exported by the cornerstone extension.

* Exposed a copy of the data source configuration via the IWebApiDataSource interface.
Added dicomUploadEnabled to a data source's configuration.

* Code clean up.

* Upgraded the dicomweb-client version to one that provides the ability to
pass a custom HTTP request. DICOM upload uses that custom HTTP request
to track progress and cancel requests.

* Distinguished between failed and cancelled uploads.

* Allow no selection in the upload dialogue.
Fixed the styling of various progress information so that everything aligns.

* Switched from cornerstone wado image loader to cornerstone dicom image loader for DICOM upload.

* Added special cancelled icon to differentiate from failed.

* Added a bit of spacing between the upload progress bar and percentage.

* Fixed minor issue with upload rejection.

* Performance improvement for cancel all uploads:
- use React memo for each upload item progress (row)
- do not await each request of a cancel all

* Fixed various padding/spacing for the DICOM upload drop zone component.
Changed the border dashing for the DICOM upload drop zone to be a background image gradient.
Added hover and active effects to the 'Cancel All Uploads' text.
2023-04-28 16:13:47 -04:00
Alireza
f377153b60
fix(viewportDialog): viewportDialoge not appearing in non-tracked viewports (#3071)
* fix: viewportdialoge not appearing in non-tracked viewports

* feat(viewports): Introduce useViewportDialog and remove deprecated API

This commit introduces the `useViewportDialog` hook and replaces the deprecated `viewportDialogApi` with the new `viewportDialogState`. Additionally, the notifications in `OHIFCornerstoneRTViewport` and `OHIFCornerstoneViewport` have been removed. Finally, the `CinePlayer` component now accepts optional parameters.

* fix tests
2023-04-28 11:06:03 -04:00
Braden Morley
fe7fa6e5bf
fix(ui): updated input fields to match new color scheme (#3323)
* Updated input fields to match new color scheme

Added small input text fields and fixed coloring

* Added tailwind changes to viewers file
2023-04-27 21:01:53 -04:00
M.D
075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Alireza
dd3944a87c
feat(storybook): Refactor Storybook to use Typescript (#3341)
* feat(storybook): Refactor Storybook to use Typescript

This commit updates the Storybook configuration to use Typescript, including renaming `main.js` to `main.ts`, updating `core.builder` and `framework.name` to use `@storybook/builder-webpack5` and `@storybook/react-webpack5`, respectively. The code also adds options to `addon-docs` to enable adding GFM support to the generated docs. Additionally, the commit modifies `staticDir`, removes outdated addons, and makes various devDependencies and PostCSS updates to align with Storybook 7.x.x. Finally, the commit removes some unused code and relocates `Button` and `AboutModal` story files.

* apply review comments

* update yarn lock
2023-04-27 12:13:27 -04:00
Alireza
66863281c4
feat(RT): add dicom RT support via volume viewports (#3310)
* feat: initial RT support

* make the segmentation service work with representation data

* feat: make segmentation service work with representations

* fix rtss vis

* fix: rt hydration

* fix the rendering of rt names

* fix imports

* refactor: Modify status and click handling for hydration of RTStructures

Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.

* wip for highlighting contours

* refactor rt displayset code

* review code update

* update cornerstone dependencies

* refactor: Update license year, version number, and minor code cleanup

This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.

* add bulkdataURI retrieve for RT

* fix package version

* apply review comments

* apply review comments

* apply review comments

* feat(panels): refactor and streamline segmentation configuration and inputs

Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.

* fix various bugs

* fix contour delete by upgrade cs3d version

* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.

* update yarn lock
2023-04-26 12:21:08 -04:00
Bill Wallace
6cf271d006
fix: Service consistency typing (#3309)
* Use more consistent type/structure for services

* Fix restoring SR so the tests described work

* One more typed service

* Added types for the Cornerstone library

* Couple more type fixes
2023-04-18 11:17:50 -04:00
M.D
47c25f4364
feat(measurements): add CircleROI Tool (#3211)
* [refactor] measurement service mapping files - rename to .ts files

* [fix] RectangleROI - measurement service mapping _getReport() function - tool name fix

* [feat] added CircleROI tool from updated cornerstone3D

* [refactor] fix for typescript strong typing warnings

* [feat] cornerstone-dicom-sr extension - added CircleROI tool

* [feat] added toolbar button for CircleROI tool

* [doc] doc updates for CircleROI tool

* [update] library - dcmjs to 0.29.5

* [fix] roundNumber() function when given strings

* [fix] refactor after upgrading conerstonejs library 0.49.0

* yarn.lock file change
2023-04-17 08:23:03 -04:00
Bill Wallace
5e42a42b5f
fix(viewports): The display of linked viewports during drag and drop has a race (#3286)
* fix: The display of linked viewports during drag and drop has a race

* PR review comments

* fix: Segmentation display two up

* Removing console logs

* Fix the blank viewport can have stuff added to it

* Fix the null name on HP module

* Fix the navigate to initial image

* Fix the nth interleave loader

* Fix the unit tests

* PR comments - docs mostly

* fix: Exception thrown on change displayset after double click
2023-03-31 11:58:48 -04:00
Joe Boccanfuso
d5ff590dfc
feat(DoubleClick): double click a viewport to one up and back (#3285)
* feat(DoubleClick): double click a viewport to one up and back

Added a toggleOneUp command that puts the active viewport into a 1x1 grid layout
and it toggles out of 'one-up' by restoring its saved 'toggleOneUpViewportGridStore'
from the StateSyncService.
Added double click customization for the Cornerstone extension with the
default double click handling being the toggleOneUp command.
Added a cypress test for the double click functionality.

* PR feedback:
- tracked viewport measurements no longer show as dashed when toggling one up
- disallowed double clicking near a measurement
- updated cornerstone3D dependencies to fix double click of TMTV and volume viewport 3D
- created ViewportGridService.getLayoutOptionsFromState

* Updated the ViewportGridService docs.

* Switched to using 'cornerstoneViewportClickCommands' and consistency with the context menu clicks.
2023-03-29 15:39:51 -04:00
Bill Wallace
8e9d7bd2bb
feat(findingSite): Allow customizing the measurement panel and show site/finding (#3155)
* feat: Allow customizing the measurements panel.

Also includes default display of the site/finding values from the DICOM
SR object.

Update fixes

PR review comments - move the recordInteraction to COmmandsManager.run

PR fixes

fix: Dependency updates to allow right click to be recognized

PR fixes

* Use newer CSWIL

* Make both the base measurements and the tracking measurements show codes

* Fix the right click context menu bringing up menu
2023-03-24 16:45:21 -04:00
Bill Wallace
dd22e37e4c
fix(contextMenu): fixes for context menu icon (#3275) 2023-03-22 18:04:44 -04:00