* fix(Video): Added fallback checks for DICOM video
Added some docs for video, pdf and upload.
* Added separate headings for DICOM PDF, DICOM Video and DICOM Upload in the docs.
* Updated docs for singlepart data source configuration.
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI
* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.
* Fixed broken e2e tests.
* fix: Make the cornerstone sR viewport show all measurements
* PR fixes
* PR fixes
* Add a DICOM SR hanging protocol
* Duplicate the hanging protocol for seg as well
* PR requested change
* PR requested changes
* PR fixes plus merge update fixes
* PR fixes and integration test fix
* PR - documentation
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* feat: Add initial cli tool structure
* feat: add copying template files
* feat: Add mode template and command
* feat: Add readme template generation
* feat: Add documentation to extension template
* feat: Enhance documentation of the template mode
* fix: cli module type
* feat: Add config-based mode and extension registration (#2660)
* feat: Add ohif cli add/remove extension/mode (#2661)
* Basic working CLI for add-extension and remove-extension
* Basic cli for add/remove extension/mode, lots more to do.
* Cleanup and harden]
* feat: Add list of tasks to add-mode
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* feat: Add git initialization for the mode or extension template (#2662)
* fix: package json file to include templates
* feat: Add git initialization for the mode or extension template
* feat: Add more checks of git and target dir
* feat: refactore library utilities
* feat: Add the list command to print extensions and modes (#2664)
* feat: Add the list command to print extensions and modes
* Add todo
* Feat/ohif cli validation + auto install (#2671)
* WIP
* Working mode keyword verification
* Validation
* auto install extensions based on modes
* WIP remove unused extensions on removeMove
* Working add-mode, remove-mode automatic extension management.
* If extension is in used by a mode, don't allow the CLI to uninstall it
* Cleanup addExtension
* cleanup removeExtension and addMode
* Cleanup removeMode
* Update existing extensions with the needed keywords/peer deps
* Fix broken config
* Feat/cli search (#2677)
* feat: refactor pretty print for console
* feat: add search for modes and extensions
* fix: ugly colors
* Feat/ohif cli error handling publishing (#2679)
* WIP
* fix: webpack imports
* wip
* fix: react router dom private routes
* from last commit
* wip
* fix: webpack prod builds
* WIP
* Working regsitration with new IDs
* Stable
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* verify extensions when constructing modes. (#2681)
* verify extensions when constructing modes.
* Add version to unit tests so it conforms to schema
* Update ohif utils exposed via @ohif/core
* Fix import
* fix tests
* feat: ohif-cli link local modes/extensions for development (#2682)
* feat: enable cli to work with project root
* feat: add initial link package
* feat: add link and unlink extension
* feat: add link and unlink mode
* erro handling for link-package
* feat: add comment on ohif-cli linking for development (#2686)
* Docs/ohif cli (#2687)
* feat: Add documentation for templates
* feat: Add more documentation
* Fix/core publish (#2685)
* versions
* wip
* remove webpack clean output
* fix publish
* use next as dist tag for v3 for now
* fix webpack pro recipe for output
* fix: lerna publish next
* fix(cli): fix issues when trying to link an extension or a mode (#2725)
The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.
* make dicom pdf and video work after cli merge
* add axios dependency
* comment out the chdir for now
* create id and version based on user inputs
* customizable path for extension and modes
* fix template to make the template mode load
* fix the questions to loop if path is not desirable
* fix templates
* correct package json order
* unify the package creation for extension and mode
* bump versions for each package
* bump extension versions to 3.0
* add gitignore to templates
* fix version requirements when ^
* update docs
* update docs and fix tests
* try to fix the tests
* bump node version
* remove the version from extensions
* remove the version from modes
* remove version from extensionManager
* fix eslint
* revert husky version
* fix eslint
* fix node version for new eslint
* fix documentatoin removing version
* fix cicle ci image version
* fix circle ci node image
* fix circle ci node image
* add back the video and pdf
Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
* feat(OHIFv3):Add a video viewport
* Fixed a couple of viewing issues
* fix(OHIF):If not all instances are used by a given provider, then continue to add items
* Added video data
* Add a basic e2e test for video display
* Adding a screen shot as requested
