Commit Graph

140 Commits

Author SHA1 Message Date
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
James Petts
509c41fbab
fix: retrieveSeriesMetadata (#2703) 2022-02-08 08:17:37 -05:00
Patrick Wespi
c2bbfc2cac fix: remove temporary link element after csv download 2022-01-04 09:10:35 +01:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Bill Wallace
2327b4ae12 feat: Add Static WADO display (#2499)
* Rebased to have just the static view changes

* Changes based on the PR

* Couple more changes for the PR

* Removed an extraneous log

* Fix the study worklist display when returning to the page

* Added some documentation on the static wado data source setup, and a
bounds check change on the Queue test which was failing

* PR updates - change the undefined study description to '' and remove the aws deploy

* Fixed the e2e tests to actually pass/fail correctly on actual results
2021-08-24 17:53:03 -04:00
Erik Ziegler
3220af737c
fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00
Alireza
3dec7cfcda
fix: Address various layout and prompt bugs (#2472)
* fix: layout should not reset when opening a new study in studyBrowser

* fix: added state to handle ignored SR series for hydration
2021-07-19 14:31:40 +02:00
Erik Ziegler
e7b32cc51e
feat: Support for OpenID Connect (#2431)
* feat: Add OpenID Connect support, speed up docker rebuilds

* fix: Switch Google Cloud API URL to v1

* chore: Remove redux-oidc and use our own components instead
2021-06-23 20:41:27 +02:00
Alireza
1bf651e763
feat: Added support for i18n (#2439)
* Added translation for various react components in OHIF-v3

* Added a test language for debugging- test-LNG 

* Added copy for test language to not get overwritten
2021-06-15 10:56:33 -04:00
Erik Ziegler
99b8dc4759
feat: Add White Labelling, Hanging Protocols, and tons of Extensions / Mode fixes
* modified

* new files in existing extensions/libraries/modes

* fixed bugs and tests

* Clean up

* fix: viewport display fixed

* Fixed configs for deployment

* Removed unnecessary files and functions

* Fixed default HP module

* Added white labelling

* Fixed hash routing

* Removed unnecessary routers

Co-authored-by: Alireza Sedghi <ar.sedghi@gmail.com>
2021-05-28 14:32:48 -04:00
Erik Ziegler
0db81b30f3
chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
Erik Ziegler
e0a31caebf
fix: Call load if necessary before rehydration prompt. Jump to first measurement on rehydration (OHIF-369) (#2184) 2020-11-25 13:35:43 +01:00
Danny Brown
0d9da69580
fix: update DICOMSR and Measurement Panel copy to use L/W (#2104) 2020-10-12 21:43:28 -04:00
Danny Brown
0b80f19bfd
fix: ellipse should use exponent (#2086)
* fix: prevent app from blowing up when snapshot modal is opened

* fix: use superscript tag to indicate ellipse is mm squared

* fix: update measurement item to allow us to specify html in MeasurementItem display text
2020-10-05 21:45:43 -04:00
Danny Brown
6c40f581a6
fix: autofocus reject SR dialog input focus to "Yes" button (#2083) 2020-10-05 21:43:12 -04:00
Danny Brown
5689bf5369
fix: sort study cards by study date, descending (#2081) 2020-10-05 21:40:37 -04:00
Danny Brown
6a0563f1cf
fix: update csv column titles to be consistent (UIDs) (#2080) 2020-10-05 21:27:36 -04:00
Danny Brown
4ae848761d
fix: swallow update-image error for "clicking annotation arrows"; as doing _nothing_ if the image isn't loaded yet is perfectly okay (#2076) 2020-10-01 22:08:51 -04:00
Danny Brown
56824b9142
fix: button colors quick (#2056)
* add _redirects file for when output target is netlify

* temporarily swap dialog primary/secondary button types for dialogs
2020-09-22 21:41:42 -04:00
Danny Brown
ba38cebcd7
fix: duplicate measurements on hydration (#2047)
* chore: remove lingering debugger statements

* fix: order of arguments on `MeasurementService.remove` calls

* fix: ensure report is dirty when intial measurements are added
2020-09-17 22:02:32 -04:00
Danny Brown
876cc58348
fix: use instance number instead of index number in stack (#2046) 2020-09-17 16:28:41 -04:00
Danny Brown
41316fead0
fix: display instance num sr viewport (#2045)
* fix: duplicate and use TrackingViewport's overlay w/ SR Viewport

* chore: correct component naming for OHIFTrackingViewport
2020-09-17 16:08:11 -04:00
Danny Brown
3911d74cf4
fix: update reject/delete dialog title, body copy, and button text (#2043) 2020-09-16 22:45:13 -04:00
Danny Brown
5a66920d1d
fix: Misc. workflow fixes [OHIF-363] (#2040)
* fix: "Adding measurements to existing report" portion of issue

* fix: notes from investigation to fix "Creating a new report while tracking measurements"

* fix: "Measurements spanning multiple studies"

* chore: comments explaining isDirty behavior
2020-09-16 21:56:51 -04:00
Danny Brown
cae54b0779
Fix/update branch cherry pick (#2039)
* Update all the icons

* Turn off global tool sync; watch as the world burns

* Shift a bunch of things around so we can start tracking/setting per element

* ToolBarService to initiate one of three different calls; callback passed to all button types

* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state

* Changes to toolbar button interface and config

* Fix broken layout selector

* Update SR viewport to activate tools in viewport component

* Duplicate activation logic in measurement tracking extension

* Add alternative/dashed variants for SR Viewport

* pass through "setToolActive" commands for other viewport types

* fix small overlay bugs (no wwwc or scale info)

* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog

* Fix prop-types

* Update tracked viewport to have alternative tracked styling

* alt styling for SR viewports

* Update to support isLocked + isRehydratable

* fix broken logic

* fix broken logic

* switch icon style

* fix icon styles

* hover and click to start flow

* expedited workflow when data is not dirty (just after SR hydration)

* fix: setting elliptical roi tool

* fix arrow annotate dialog

* fix: do not show learn more button for now

* remove dead code

* simpler cache invalidation

* simpler cache invalidation part 2

* Fix for unable to spand study cards on separate pages
2020-09-14 21:18:46 -04:00
dannyrb
9587d27b02 fix: typo 2020-08-19 23:14:04 -04:00
James Petts
42b02a62d3
OHIF-326, export as CSV. (#1976) 2020-08-19 15:31:25 -04:00
James Petts
68332701ab
[OHIF-309] - Users should be able to delete an SR from the side panel when the behavior is supported by the data source (#1952)
* Remove trailing zeroes from patient age

* WIP reject + remove displaySet.

* ohif-316: Update DICOM SR thumbnail design to include a delete action (#1948)

* add "supportsReject" to netlify config

Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:27:34 -04:00
Igor Octaviano
760e2a62ae
OHIF-323: Cine Dialog (#1961)
* ohif-323: add cineplayer flow

* ohif-323: improve toolbar flow of cine

* ohif-323: improve cine styles

* ohif-323: use toggle instead of set

* ohif-323: add compatibility comment

* ohif-323: move cine logic to command

* ohif-323: cr update

* ohif-323: remove typo and update svg title

* ohif-323: remove log

* ohif-323: update props and remove dead code

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:24:07 -04:00
Igor Octaviano
e04f74499f
OHIF-301: Add sorting to worklist series (#1960)
* ohif-301: add sorting to work list series

* ohif-301: clearadd series date to qido

* ohif-301: add series date to qido

* Update qido.js

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2020-08-11 21:01:48 -04:00
James Petts
3267706b33
[OHIF-302] fix: Set SeriesNumber for generated SRs to 4700 or above (#1953) 2020-08-07 16:57:40 +02:00
Igor Octaviano
fc71ad0e4f
OHIF-343: jump to image on measurement edit (#1978) 2020-08-07 16:53:42 +02:00
James Petts
58c2c00663
Fix caching issues with related studies. (#1970) 2020-08-06 17:25:42 +02:00
James Petts
8e6b3ac580
Show 1-based in stack position of measurement in measurements panel. (#1967) 2020-08-06 12:25:27 +02:00
James Petts
401a2e38c8
[OHIF-193 + OHIF-313] (#1955)
* create context menu

* OHIF-193: Add context menu integration with measurement service

* OHIF-193: Update comments

* OHIF-CR Update: Add requested updates

* CR Update: Update measurement service remove function

* CR Update: Update casing

* CR Updates

* Update cornerstone measurments when the label is edited in the measurement service.

* Implement click outside behavior

* Address reviewer comments.

Co-authored-by: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
2020-08-05 13:56:02 +01:00
Igor Octaviano
39e68f3193
ohif-300: add primary to allstudies in all tab (#1954) 2020-08-04 16:45:53 +01:00
Danny Brown
2a51d75f77
[OHIF-339] - workflow changes (#1931)
* workflow changes

* Cherry pick OHIF-310 into this PR.

* fix label bug and dead code

* remove comment

* Wire up CreateReportButton

* fix additionalFindingTypes + save interaction

* Remove unused createReportAsync call

* stub for report hydration prompt

* Update PR

* Remove debuggers

* push updated code

* Push updates

* push

* fix sidebar save

* enable tracking of new study or series

* fix for duplicate created report series in sidebard

* fix for unexpected viewport dialog after visiting study list then a new study

* Fix for hydration not marking multiple series as active

* Reviewer changes.

* Respond to final review comment, add series description setting for export.

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2020-08-04 10:11:23 +01:00
Igor Octaviano
4d1d73b89c
OHIF-311: Set nav arrows as active for all viewports (#1930) 2020-07-28 10:44:48 +02:00
Erik Ziegler
55cf9f2306
OHIF-285/OHIF-274: Fix default hanging of display sets into the ViewportGrid (#1917)
* OHIF-285/OHIF-274: Fix default hanging of display sets into the ViewportGrid

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2020-07-24 11:51:57 +01:00
James Petts
a4f286feee
[OHIF 284] - JumpToMeasurement + prevent layout change on scroll Prevent layout change on scroll (#1889)
* No more setting on debounce, jumpToMeasurement service set up.

* Fix bug causing a race condition sometimes if you click super fast.

* Optimise rendering of Tracking viewport slightly.

* element => targetElement

* Remove complete TODO

* Respond to reviewer comments.

* Fix e2e workflow.

* Fix regression that removed highlighting on jump to.

* Make sure jump to works from panel as well as viewport.

* Fix typo and remove debugger.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-22 19:40:40 +02:00
James Petts
59003362c3
[OHIF-278] Jumping to a measurement should set it to "active" in cornerstone-tools, highlighting it as green (#1888)
* Set cornerstone tool active when jumping to measurement.

* Remove debugger statement

* Also set active on left/right actionbar buttons.
2020-07-10 15:38:40 -04:00
James Petts
3eba027003
[OHIF-288] Rehydrating SRs is missing Labels (#1885)
* WIP

* Finish OHIF-288, need to update dcmjs.

* Remove unused copied resources.

* Cleaned up label import code.

* Update for dcmjs Findings -> Finding.

* Update dcmjs

* Remove debuggers

* Respond to reviewer comments.

* update dcmjs version

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-10 15:11:22 -04:00
Igor Octaviano
67f91251d8
fix/ohif-remove-measurements-label-notification (#1884) 2020-07-10 16:06:05 +01:00
Rodrigo Antinarelli
b28a70520e
fix: OHIF-219 - Viewport Labels should be sequential (#1881) 2020-07-10 15:06:45 +01:00
James Petts
25ded882ec
Disable double click for now. (#1872) 2020-07-06 08:28:21 -04:00
Danny Brown
86327cd808
bump RCV version and use new prop to control resize/refresh behavior (#1869) 2020-07-04 13:25:23 -04:00
Danny Brown
e2c72d48fe
Add support for "additional findings" section (#1867) 2020-07-03 15:57:35 -04:00
Igor Octaviano
b7760dc291
OHIF-228: Viewports should not be clipped after resizing (#1865)
* Fix overflow of viewports

* Apply changes to sr

* Add double click back

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 14:50:33 -04:00
James Petts
4dfe144bf8
[OHIF-251] - Double click to maximise viewport/ revert to previous layout. (#1860)
* WIP

* double click to maximise implemented at the viewport grid layer.

* Remove memory of cached layout when the layout is changed, or a different displaySet is set.

* WIP fix double click for cornerstone.

* Update CST

* Prevent maximising when double clicking the action bar

* Update extensions/dicom-sr/src/OHIFCornerstoneSRViewport.js

* Apply suggestions from code review

* Fix conflicts.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:12:33 +01:00
James Petts
5ee4598bbe
[OHIF-173] - Jump between measurements (#1863)
* jump between measurements.

* Apply suggestions from code review

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 12:44:20 -04:00