Commit Graph

190 Commits

Author SHA1 Message Date
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
Bill Wallace
ca9ed62a5f
feat(OHIF):Add DICOM Video Display
* feat(OHIFv3):Add a video viewport

* Fixed a couple of viewing issues

* fix(OHIF):If not all instances are used by a given provider, then continue to add items

* Added video data

* Add a basic e2e test for video display

* Adding a screen shot as requested
2022-02-24 11:55:12 -05:00
Alireza
5c8ee7f906
feat: OHIF-v3 UI Component Library (#2653)
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems

* fix: storybook webpack config

* feat: add more stories

* feat: add more stories

* feat: add more stories

* feat: fix logo and babel runtime error

* feat: move to mdx docs for ui

* feat: enhanced mdx for header and styles

* feat: Add button usecases

* feat: Add buttonGroup docs

* feat: Add docs and use case to cine and contex menu

* feat: fix decorators

* feat: add header and dropdown docs

* feat: add Icon and input docs

* feat: add more docs

* feat: add more stories

* fix: feedback section

* feat: Add doc page

* feat: Add typography and color stories

* yarn lock

* add analytics to v3-ui

* new banner image

* new viewport component

* update review comments
2022-02-10 14:08:34 -05:00
Bill Wallace
72bb074f21
feat: Add theme/config-point capability and docs. (#2641)
This is the initial addition of the config point settings to allow run time loading of GUI settings via "theme" files/parameters.
The intent is to add an example PR that shows when to use config point, how to configure it, write documentation for it etc.
2022-01-27 12:09:36 -05:00
Alireza
2f115e6ab0
feat: Add headers to prevent preflight requests (#2648) 2021-12-23 17:24:44 -05:00
Bill Wallace
0a8e952c0f
fix: Remove unused commands (#2640) 2021-12-22 11:56:57 -05:00
Alireza
65563edb54
feat: Cornerstone extension viewport default enabledElement handler and installation guides (#2636)
* feat: Add initial doc for mode installation

* fix: cornerstone viewport should have default enabledElement handler

* docs: Add custom mode and extension installation guides

* docs: Add route address for template mode
2021-12-20 14:34:51 -05:00
Erik Ziegler
ef06b7683f
fix: Address weird prefetching issues (#2574)
* fix: Address weird prefetching issues

* bump cornerstoneTools version

* remove debugger
2021-10-04 09:27:50 +02:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Erik Ziegler
3220af737c
fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00
Erik Ziegler
825e13bcf3 chore: Upgrade to webpack 5, fix conflicting issues with react-router under docusaurus with yarn workspaces 2021-07-08 15:23:09 +02:00
Alireza
70e4c55920 feat: Add error handler to CWIL 2021-07-08 10:04:23 +02:00
Erik Ziegler
e7b32cc51e
feat: Support for OpenID Connect (#2431)
* feat: Add OpenID Connect support, speed up docker rebuilds

* fix: Switch Google Cloud API URL to v1

* chore: Remove redux-oidc and use our own components instead
2021-06-23 20:41:27 +02:00
Erik Ziegler
99b8dc4759
feat: Add White Labelling, Hanging Protocols, and tons of Extensions / Mode fixes
* modified

* new files in existing extensions/libraries/modes

* fixed bugs and tests

* Clean up

* fix: viewport display fixed

* Fixed configs for deployment

* Removed unnecessary files and functions

* Fixed default HP module

* Added white labelling

* Fixed hash routing

* Removed unnecessary routers

Co-authored-by: Alireza Sedghi <ar.sedghi@gmail.com>
2021-05-28 14:32:48 -04:00
Erik Ziegler
0db81b30f3
chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
James A. Petts
414ebc6850 chore: Tag everything currently unused as legacy. 2021-02-11 17:29:07 +01:00
Danny Brown
2f4cba28a5
fix: update DICOMSR and Measurement Panel copy to use L/W (#2174)
* fix: update DICOMSR and Measurement Panel copy to use L/W

* functional viewport

* support the active viewport for snapshot

* Support empty viewport case

* bump cs-tools to pick up misc. fixes
2020-11-18 00:14:52 -05:00
Danny Brown
dc2a58da91
fix: support for delete SR aliased measurements (#2092) 2020-10-05 23:40:58 -04:00
Danny Brown
0b80f19bfd
fix: ellipse should use exponent (#2086)
* fix: prevent app from blowing up when snapshot modal is opened

* fix: use superscript tag to indicate ellipse is mm squared

* fix: update measurement item to allow us to specify html in MeasurementItem display text
2020-10-05 21:45:43 -04:00
Danny Brown
380acc1331
fix: for incorrect toolbar state between routes (#2082) 2020-10-05 21:42:30 -04:00
Danny Brown
56824b9142
fix: button colors quick (#2056)
* add _redirects file for when output target is netlify

* temporarily swap dialog primary/secondary button types for dialogs
2020-09-22 21:41:42 -04:00
Danny Brown
cae54b0779
Fix/update branch cherry pick (#2039)
* Update all the icons

* Turn off global tool sync; watch as the world burns

* Shift a bunch of things around so we can start tracking/setting per element

* ToolBarService to initiate one of three different calls; callback passed to all button types

* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state

* Changes to toolbar button interface and config

* Fix broken layout selector

* Update SR viewport to activate tools in viewport component

* Duplicate activation logic in measurement tracking extension

* Add alternative/dashed variants for SR Viewport

* pass through "setToolActive" commands for other viewport types

* fix small overlay bugs (no wwwc or scale info)

* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog

* Fix prop-types

* Update tracked viewport to have alternative tracked styling

* alt styling for SR viewports

* Update to support isLocked + isRehydratable

* fix broken logic

* fix broken logic

* switch icon style

* fix icon styles

* hover and click to start flow

* expedited workflow when data is not dirty (just after SR hydration)

* fix: setting elliptical roi tool

* fix arrow annotate dialog

* fix: do not show learn more button for now

* remove dead code

* simpler cache invalidation

* simpler cache invalidation part 2

* Fix for unable to spand study cards on separate pages
2020-09-14 21:18:46 -04:00
dannyrb
365ba2fa72 bump react-cornerstone-viewport version 2020-08-20 12:30:38 -04:00
Danny Brown
8babc8f980
perf(stackPrefetch): Added stackPrefetch config with 20 max concurrent requests 2020-08-19 22:26:33 -04:00
James Petts
42b02a62d3
OHIF-326, export as CSV. (#1976) 2020-08-19 15:31:25 -04:00
James Petts
68332701ab
[OHIF-309] - Users should be able to delete an SR from the side panel when the behavior is supported by the data source (#1952)
* Remove trailing zeroes from patient age

* WIP reject + remove displaySet.

* ohif-316: Update DICOM SR thumbnail design to include a delete action (#1948)

* add "supportsReject" to netlify config

Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:27:34 -04:00
Igor Octaviano
760e2a62ae
OHIF-323: Cine Dialog (#1961)
* ohif-323: add cineplayer flow

* ohif-323: improve toolbar flow of cine

* ohif-323: improve cine styles

* ohif-323: use toggle instead of set

* ohif-323: add compatibility comment

* ohif-323: move cine logic to command

* ohif-323: cr update

* ohif-323: remove typo and update svg title

* ohif-323: remove log

* ohif-323: update props and remove dead code

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:24:07 -04:00
Igor Octaviano
381165085a
OHIF-303: Disable SVG Cursors for tools (#1979) 2020-08-07 16:46:02 +02:00
James Petts
401a2e38c8
[OHIF-193 + OHIF-313] (#1955)
* create context menu

* OHIF-193: Add context menu integration with measurement service

* OHIF-193: Update comments

* OHIF-CR Update: Add requested updates

* CR Update: Update measurement service remove function

* CR Update: Update casing

* CR Updates

* Update cornerstone measurments when the label is edited in the measurement service.

* Implement click outside behavior

* Address reviewer comments.

Co-authored-by: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
2020-08-05 13:56:02 +01:00
Danny Brown
2a51d75f77
[OHIF-339] - workflow changes (#1931)
* workflow changes

* Cherry pick OHIF-310 into this PR.

* fix label bug and dead code

* remove comment

* Wire up CreateReportButton

* fix additionalFindingTypes + save interaction

* Remove unused createReportAsync call

* stub for report hydration prompt

* Update PR

* Remove debuggers

* push updated code

* Push updates

* push

* fix sidebar save

* enable tracking of new study or series

* fix for duplicate created report series in sidebard

* fix for unexpected viewport dialog after visiting study list then a new study

* Fix for hydration not marking multiple series as active

* Reviewer changes.

* Respond to final review comment, add series description setting for export.

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2020-08-04 10:11:23 +01:00
James Petts
5e00020fe3
OHIF-67: Fix Magnify issues by updating CornerstoneTools (#1923) 2020-07-24 21:51:52 +02:00
James Petts
32e28d2090
Arrow Annotate workflow updates. (#1921) 2020-07-24 15:34:10 +01:00
James Petts
1f1ef6a3f9
OHIF-328 up/down arrows keys on SR viewport. (#1922)
* Fix arrow key scroll on SR Viewport.

* Remove debuggers
2020-07-24 15:32:44 +01:00
Erik Ziegler
9df57e7f7f
OHIF-322: Fix tool settings to stop referencing function name because it breaks on minification (#1919) 2020-07-24 11:10:38 +02:00
Erik Ziegler
4528ee9175
OHIF-324: Switch Probe to DragProbe and apply minimal strategy (#1918) 2020-07-24 08:53:10 +02:00
James Petts
a4f286feee
[OHIF 284] - JumpToMeasurement + prevent layout change on scroll Prevent layout change on scroll (#1889)
* No more setting on debounce, jumpToMeasurement service set up.

* Fix bug causing a race condition sometimes if you click super fast.

* Optimise rendering of Tracking viewport slightly.

* element => targetElement

* Remove complete TODO

* Respond to reviewer comments.

* Fix e2e workflow.

* Fix regression that removed highlighting on jump to.

* Make sure jump to works from panel as well as viewport.

* Fix typo and remove debugger.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-22 19:40:40 +02:00
James Petts
3eba027003
[OHIF-288] Rehydrating SRs is missing Labels (#1885)
* WIP

* Finish OHIF-288, need to update dcmjs.

* Remove unused copied resources.

* Cleaned up label import code.

* Update for dcmjs Findings -> Finding.

* Update dcmjs

* Remove debuggers

* Respond to reviewer comments.

* update dcmjs version

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-10 15:11:22 -04:00
James Petts
ce40f04f2e
[OHIF-295] - Esc button should stop the creation of a measurement or annotation (#1883)
* WIP, need to fix arrow making measurement

* Update cornerstoneTools to fix cst arrow annotate event bug.
2020-07-10 15:00:10 -04:00
Danny Brown
86327cd808
bump RCV version and use new prop to control resize/refresh behavior (#1869) 2020-07-04 13:25:23 -04:00
James Petts
14797a8973
[OHIF-261 & OHIF-262] (#1862)
* WIP

* Reset viewport grid on mode switch.

* Make lifecyclehooks distinct from modules. Add needed SR hydration state on creation.

* Update extensions/cornerstone/src/init.js

* Remove unused REMOVE_MEASUREMENT listener.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:18:59 +01:00
James Petts
4dfe144bf8
[OHIF-251] - Double click to maximise viewport/ revert to previous layout. (#1860)
* WIP

* double click to maximise implemented at the viewport grid layer.

* Remove memory of cached layout when the layout is changed, or a different displaySet is set.

* WIP fix double click for cornerstone.

* Update CST

* Prevent maximising when double clicking the action bar

* Update extensions/dicom-sr/src/OHIFCornerstoneSRViewport.js

* Apply suggestions from code review

* Fix conflicts.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:12:33 +01:00
Igor Octaviano
11fbe4cf01
OHIF-223: Add "Clear" all measurements to annotation toolbar (#1861)
* Add clear button

* Use james event

* Create new commands module to default
2020-07-03 12:39:41 -04:00
James Petts
61fc093fc5
[OHIF-248] - Update cornerstoneTools version to get handle rendering improvements. (#1854)
* Only process SR on consumption of viewport.

* Hide handles whilst moving + correct hide handles on hover.

* Up CST version

* Update cst

* Remove added cornerstone viewport checks
2020-07-03 10:51:38 +01:00
Igor Octaviano
a156eadcb7
OHIF-208 (#1842)
* Set measurement as active

* Add basic dialog component

* Update styles and prop types

* Jump to image

* Update dialog

* Format date

* Update summary to use primary modalities

* delete empty studySummary page

* add missing PropTypes import

* fix for accidental sync'd viewports

* CR Updates

* CR Update avoid cache of measurements

* Use get measurement

* Add comment to edit function

* Remove request and merge modalities from series

* Update dependency: react-cornerstone-viewport@2.3.9

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.8 → 2.3.9
  * @ohif/extension-dicom-sr: 2.3.8 → 2.3.9

* Update extensions/measurement-tracking/src/panels/PanelMeasurementTableTracking/index.js

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>

* Add debugs

* remove console.debug

* Update frameindex to imageindex

* Use new rcv debounced function

* Fix hovering

* Update dialog text

* Dismiss dialogs on esc

* Update dependency: react-cornerstone-viewport@3.0.0

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.9 → 3.0.0
  * @ohif/extension-dicom-sr: 2.3.9 → 3.0.0

* OHIF-237

* remove console.debug

* Remove dead code brought in from rebase

* EmptyViewport should not display a message

* Remove more dead code from rebase

* fix variable naming

* remove unused hook

* bump yarn lock

* formatting

* Add arrow dialog

* Filter based on trackedSeries

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-02 16:53:38 -04:00
James Petts
801bf73a34
Update dcmjs to fix bidirectional issue. (#1848) 2020-07-02 10:56:36 +01:00
James Petts
bc2bde890b
OHIF-190 - Rehydrate PR (#1835)
* WIP rehydration.

* WIP OHIF-190 rehydrate.

* Remove debugger statements.

* Merge in and fix after OHIF-197 and OHIF-198

* Remove console.log

* Fix typo

* fix length tracking bug

* Respond to reviewer comments.
2020-07-01 10:08:56 +01:00
igoroctaviano
7f6aa0e260 Update dependency: cornerstone-tools@4.16.1
cornerstone-tools
  * @ohif/core: 4.16.0 → 4.16.1
  * @ohif/extension-cornerstone: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-rt: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-segmentation: 4.15.1 → 4.16.1
  * @ohif/extension-dicom-sr: 4.16.0 → 4.16.1
  * @ohif/extension-measurement-tracking: 4.15.1 → 4.16.1
  * @ohif/extension-vtk: 4.16.0 → 4.16.1
  * @ohif/viewer: 4.16.0 → 4.16.1
2020-06-30 21:55:59 -03:00
Danny Brown
1931d45450
Merge branch 'feat/v2-main' into dannyrb/ohif-154/restore-command-functionality-for-toolbar 2020-06-26 14:26:35 -04:00
dannyrb
33a2df6ad9 Update all cornerstone commands 2020-06-26 14:22:45 -04:00
dannyrb
8339154820 Clean up old comments 2020-06-26 14:17:45 -04:00