Commit Graph

82 Commits

Author SHA1 Message Date
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
Alireza
5c8ee7f906
feat: OHIF-v3 UI Component Library (#2653)
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems

* fix: storybook webpack config

* feat: add more stories

* feat: add more stories

* feat: add more stories

* feat: fix logo and babel runtime error

* feat: move to mdx docs for ui

* feat: enhanced mdx for header and styles

* feat: Add button usecases

* feat: Add buttonGroup docs

* feat: Add docs and use case to cine and contex menu

* feat: fix decorators

* feat: add header and dropdown docs

* feat: add Icon and input docs

* feat: add more docs

* feat: add more stories

* fix: feedback section

* feat: Add doc page

* feat: Add typography and color stories

* yarn lock

* add analytics to v3-ui

* new banner image

* new viewport component

* update review comments
2022-02-10 14:08:34 -05:00
Erik Ziegler
ef06b7683f
fix: Address weird prefetching issues (#2574)
* fix: Address weird prefetching issues

* bump cornerstoneTools version

* remove debugger
2021-10-04 09:27:50 +02:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Erik Ziegler
3220af737c
fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00
Erik Ziegler
7a9f113b91
Merge branch 'feat/v2-main' into feat/v2-main-docusaurus-netlify-monorepo 2021-07-20 15:55:21 +02:00
Alireza
3dec7cfcda
fix: Address various layout and prompt bugs (#2472)
* fix: layout should not reset when opening a new study in studyBrowser

* fix: added state to handle ignored SR series for hydration
2021-07-19 14:31:40 +02:00
Erik Ziegler
825e13bcf3 chore: Upgrade to webpack 5, fix conflicting issues with react-router under docusaurus with yarn workspaces 2021-07-08 15:23:09 +02:00
Erik Ziegler
99b8dc4759
feat: Add White Labelling, Hanging Protocols, and tons of Extensions / Mode fixes
* modified

* new files in existing extensions/libraries/modes

* fixed bugs and tests

* Clean up

* fix: viewport display fixed

* Fixed configs for deployment

* Removed unnecessary files and functions

* Fixed default HP module

* Added white labelling

* Fixed hash routing

* Removed unnecessary routers

Co-authored-by: Alireza Sedghi <ar.sedghi@gmail.com>
2021-05-28 14:32:48 -04:00
Erik Ziegler
0db81b30f3
chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
Erik Ziegler
e0a31caebf
fix: Call load if necessary before rehydration prompt. Jump to first measurement on rehydration (OHIF-369) (#2184) 2020-11-25 13:35:43 +01:00
Danny Brown
2f4cba28a5
fix: update DICOMSR and Measurement Panel copy to use L/W (#2174)
* fix: update DICOMSR and Measurement Panel copy to use L/W

* functional viewport

* support the active viewport for snapshot

* Support empty viewport case

* bump cs-tools to pick up misc. fixes
2020-11-18 00:14:52 -05:00
Danny Brown
0d9da69580
fix: update DICOMSR and Measurement Panel copy to use L/W (#2104) 2020-10-12 21:43:28 -04:00
Danny Brown
ba38cebcd7
fix: duplicate measurements on hydration (#2047)
* chore: remove lingering debugger statements

* fix: order of arguments on `MeasurementService.remove` calls

* fix: ensure report is dirty when intial measurements are added
2020-09-17 22:02:32 -04:00
Danny Brown
41316fead0
fix: display instance num sr viewport (#2045)
* fix: duplicate and use TrackingViewport's overlay w/ SR Viewport

* chore: correct component naming for OHIFTrackingViewport
2020-09-17 16:08:11 -04:00
Danny Brown
cae54b0779
Fix/update branch cherry pick (#2039)
* Update all the icons

* Turn off global tool sync; watch as the world burns

* Shift a bunch of things around so we can start tracking/setting per element

* ToolBarService to initiate one of three different calls; callback passed to all button types

* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state

* Changes to toolbar button interface and config

* Fix broken layout selector

* Update SR viewport to activate tools in viewport component

* Duplicate activation logic in measurement tracking extension

* Add alternative/dashed variants for SR Viewport

* pass through "setToolActive" commands for other viewport types

* fix small overlay bugs (no wwwc or scale info)

* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog

* Fix prop-types

* Update tracked viewport to have alternative tracked styling

* alt styling for SR viewports

* Update to support isLocked + isRehydratable

* fix broken logic

* fix broken logic

* switch icon style

* fix icon styles

* hover and click to start flow

* expedited workflow when data is not dirty (just after SR hydration)

* fix: setting elliptical roi tool

* fix arrow annotate dialog

* fix: do not show learn more button for now

* remove dead code

* simpler cache invalidation

* simpler cache invalidation part 2

* Fix for unable to spand study cards on separate pages
2020-09-14 21:18:46 -04:00
dannyrb
365ba2fa72 bump react-cornerstone-viewport version 2020-08-20 12:30:38 -04:00
James Petts
42b02a62d3
OHIF-326, export as CSV. (#1976) 2020-08-19 15:31:25 -04:00
James Petts
68332701ab
[OHIF-309] - Users should be able to delete an SR from the side panel when the behavior is supported by the data source (#1952)
* Remove trailing zeroes from patient age

* WIP reject + remove displaySet.

* ohif-316: Update DICOM SR thumbnail design to include a delete action (#1948)

* add "supportsReject" to netlify config

Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:27:34 -04:00
James Petts
2ded8b7ee8
change DP of SR viewport to 1dp (#1968) 2020-08-06 11:10:42 +01:00
Danny Brown
2a51d75f77
[OHIF-339] - workflow changes (#1931)
* workflow changes

* Cherry pick OHIF-310 into this PR.

* fix label bug and dead code

* remove comment

* Wire up CreateReportButton

* fix additionalFindingTypes + save interaction

* Remove unused createReportAsync call

* stub for report hydration prompt

* Update PR

* Remove debuggers

* push updated code

* Push updates

* push

* fix sidebar save

* enable tracking of new study or series

* fix for duplicate created report series in sidebard

* fix for unexpected viewport dialog after visiting study list then a new study

* Fix for hydration not marking multiple series as active

* Reviewer changes.

* Respond to final review comment, add series description setting for export.

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2020-08-04 10:11:23 +01:00
Igor Octaviano
4d1d73b89c
OHIF-311: Set nav arrows as active for all viewports (#1930) 2020-07-28 10:44:48 +02:00
James Petts
5e00020fe3
OHIF-67: Fix Magnify issues by updating CornerstoneTools (#1923) 2020-07-24 21:51:52 +02:00
James Petts
32e28d2090
Arrow Annotate workflow updates. (#1921) 2020-07-24 15:34:10 +01:00
James Petts
1f1ef6a3f9
OHIF-328 up/down arrows keys on SR viewport. (#1922)
* Fix arrow key scroll on SR Viewport.

* Remove debuggers
2020-07-24 15:32:44 +01:00
James Petts
a4f286feee
[OHIF 284] - JumpToMeasurement + prevent layout change on scroll Prevent layout change on scroll (#1889)
* No more setting on debounce, jumpToMeasurement service set up.

* Fix bug causing a race condition sometimes if you click super fast.

* Optimise rendering of Tracking viewport slightly.

* element => targetElement

* Remove complete TODO

* Respond to reviewer comments.

* Fix e2e workflow.

* Fix regression that removed highlighting on jump to.

* Make sure jump to works from panel as well as viewport.

* Fix typo and remove debugger.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-22 19:40:40 +02:00
James Petts
3eba027003
[OHIF-288] Rehydrating SRs is missing Labels (#1885)
* WIP

* Finish OHIF-288, need to update dcmjs.

* Remove unused copied resources.

* Cleaned up label import code.

* Update for dcmjs Findings -> Finding.

* Update dcmjs

* Remove debuggers

* Respond to reviewer comments.

* update dcmjs version

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-10 15:11:22 -04:00
James Petts
ce40f04f2e
[OHIF-295] - Esc button should stop the creation of a measurement or annotation (#1883)
* WIP, need to fix arrow making measurement

* Update cornerstoneTools to fix cst arrow annotate event bug.
2020-07-10 15:00:10 -04:00
Igor Octaviano
1507f9eb61
Add missing props (#1879) 2020-07-10 15:29:57 +01:00
Rodrigo Antinarelli
b28a70520e
fix: OHIF-219 - Viewport Labels should be sequential (#1881) 2020-07-10 15:06:45 +01:00
James Petts
25ded882ec
Disable double click for now. (#1872) 2020-07-06 08:28:21 -04:00
Danny Brown
86327cd808
bump RCV version and use new prop to control resize/refresh behavior (#1869) 2020-07-04 13:25:23 -04:00
Igor Octaviano
b7760dc291
OHIF-228: Viewports should not be clipped after resizing (#1865)
* Fix overflow of viewports

* Apply changes to sr

* Add double click back

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 14:50:33 -04:00
James Petts
14797a8973
[OHIF-261 & OHIF-262] (#1862)
* WIP

* Reset viewport grid on mode switch.

* Make lifecyclehooks distinct from modules. Add needed SR hydration state on creation.

* Update extensions/cornerstone/src/init.js

* Remove unused REMOVE_MEASUREMENT listener.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:18:59 +01:00
James Petts
4dfe144bf8
[OHIF-251] - Double click to maximise viewport/ revert to previous layout. (#1860)
* WIP

* double click to maximise implemented at the viewport grid layer.

* Remove memory of cached layout when the layout is changed, or a different displaySet is set.

* WIP fix double click for cornerstone.

* Update CST

* Prevent maximising when double clicking the action bar

* Update extensions/dicom-sr/src/OHIFCornerstoneSRViewport.js

* Apply suggestions from code review

* Fix conflicts.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:12:33 +01:00
James Petts
61fc093fc5
[OHIF-248] - Update cornerstoneTools version to get handle rendering improvements. (#1854)
* Only process SR on consumption of viewport.

* Hide handles whilst moving + correct hide handles on hover.

* Up CST version

* Update cst

* Remove added cornerstone viewport checks
2020-07-03 10:51:38 +01:00
Igor Octaviano
a156eadcb7
OHIF-208 (#1842)
* Set measurement as active

* Add basic dialog component

* Update styles and prop types

* Jump to image

* Update dialog

* Format date

* Update summary to use primary modalities

* delete empty studySummary page

* add missing PropTypes import

* fix for accidental sync'd viewports

* CR Updates

* CR Update avoid cache of measurements

* Use get measurement

* Add comment to edit function

* Remove request and merge modalities from series

* Update dependency: react-cornerstone-viewport@2.3.9

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.8 → 2.3.9
  * @ohif/extension-dicom-sr: 2.3.8 → 2.3.9

* Update extensions/measurement-tracking/src/panels/PanelMeasurementTableTracking/index.js

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>

* Add debugs

* remove console.debug

* Update frameindex to imageindex

* Use new rcv debounced function

* Fix hovering

* Update dialog text

* Dismiss dialogs on esc

* Update dependency: react-cornerstone-viewport@3.0.0

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.9 → 3.0.0
  * @ohif/extension-dicom-sr: 2.3.9 → 3.0.0

* OHIF-237

* remove console.debug

* Remove dead code brought in from rebase

* EmptyViewport should not display a message

* Remove more dead code from rebase

* fix variable naming

* remove unused hook

* bump yarn lock

* formatting

* Add arrow dialog

* Filter based on trackedSeries

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-02 16:53:38 -04:00
James Petts
c36f853a38
[OHIF-235] Lazy processing of DICOM SR for viewport. (#1849)
* Only process SR on consumption of viewport.

* remove debugger

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-02 10:17:04 -04:00
James Petts
801bf73a34
Update dcmjs to fix bidirectional issue. (#1848) 2020-07-02 10:56:36 +01:00
James A. Petts
44c2927963 Fix export 2020-07-01 15:12:49 +01:00
James A. Petts
7c3c717d33 Update dcmjs 2020-07-01 14:56:25 +01:00
James A. Petts
413f5c9003 Remove debugger statements. 2020-07-01 14:35:29 +01:00
James A. Petts
7092fc858e Don't reposition textboxes for now. 2020-07-01 14:32:54 +01:00
James A. Petts
e3f2e26e3b Render text properly, render arrow + freetext. Need to move textboxes appropriately. 2020-07-01 11:59:29 +01:00
James A. Petts
d956c3008c Pull in main 2020-07-01 10:12:41 +01:00
James Petts
bc2bde890b
OHIF-190 - Rehydrate PR (#1835)
* WIP rehydration.

* WIP OHIF-190 rehydrate.

* Remove debugger statements.

* Merge in and fix after OHIF-197 and OHIF-198

* Remove console.log

* Fix typo

* fix length tracking bug

* Respond to reviewer comments.
2020-07-01 10:08:56 +01:00
igoroctaviano
7f6aa0e260 Update dependency: cornerstone-tools@4.16.1
cornerstone-tools
  * @ohif/core: 4.16.0 → 4.16.1
  * @ohif/extension-cornerstone: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-rt: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-segmentation: 4.15.1 → 4.16.1
  * @ohif/extension-dicom-sr: 4.16.0 → 4.16.1
  * @ohif/extension-measurement-tracking: 4.15.1 → 4.16.1
  * @ohif/extension-vtk: 4.16.0 → 4.16.1
  * @ohif/viewer: 4.16.0 → 4.16.1
2020-06-30 21:55:59 -03:00
James A. Petts
56358ad95f WIP callout in SR viewport. 2020-06-30 18:00:37 +01:00
James A. Petts
ef8683b8ea Remove console.log 2020-06-30 16:36:09 +01:00
James A. Petts
4ec07dba0b Merge in and fix after OHIF-197 and OHIF-198 2020-06-30 16:35:32 +01:00