Commit Graph

277 Commits

Author SHA1 Message Date
Joe Boccanfuso
86f54d0d07
fix(toggleOneUp): fixed one up for main tmtv layout (#3677) 2023-09-26 16:49:06 -04:00
Joe Boccanfuso
85c899b399
feat(SidePanel): new side panel tab look-and-feel (#3657) 2023-09-22 15:36:44 -04:00
Alireza
48bbd6281a
feat(segmentation mode): Add create, and export SEG with Brushes (#3632) 2023-09-22 10:23:44 -04:00
Joe Boccanfuso
2737903386
fix(DicomJson): retrieve.series.metadata method should be async (#3659) 2023-09-18 11:02:27 -04:00
Ibrahim
74e62a1763
fix(health imaging): studies not loading from healthimaging if imagepositionpatient is missing (#3646) 2023-09-12 10:30:02 -04:00
Yaroslav Halchenko
11ca5b6eae
docs(spelling): Add codespell config + github action, run and fix a good number of typos (#3645) 2023-09-12 07:40:38 -04:00
Alireza
94f7cfb08e
fix(hotkeys): preserve hotkeys if changed, and reduce re-rendering (#3635) 2023-09-06 14:09:26 -04:00
Alireza
9045ddaedc
chore(prettier): full repo linting and code reformatting once and for all (#3627) 2023-09-01 16:19:39 -04:00
Alireza
4c6ff873e8
feat(grid): remove viewportIndex and only rely on viewportId (#3591)
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2023-08-30 16:46:55 -04:00
Joe Boccanfuso
adedc8c382
feat(data source UI config): Popup the configuration dialogue whenever a data source is not fully configured (#3620) 2023-08-30 09:27:48 -04:00
Joe Boccanfuso
44f101d3f2
fix(PT Metadata): Allow for PatientWeight to be missing from the metadata (#3621) 2023-08-29 12:21:21 -04:00
Joe Boccanfuso
a336992971
feat(cloud data source config): GUI and API for configuring a cloud data source with Google cloud healthcare implementation (#3589) 2023-08-25 14:19:17 -04:00
Joe Boccanfuso
0f9b36906f
feat(thumbnail highlight): Thumbnails of hydrated series are now highlighted (#3594) 2023-08-16 12:51:26 -04:00
rodrigobasilio2022
f845f87716
feat(handler): Add handler for unsupported sopclassUIDs (#3601) 2023-08-16 11:37:28 -04:00
Bill Wallace
53c16b928f
feat(hp priors): Study comparison hanging protocol (#3579) 2023-08-16 10:15:12 -04:00
rodrigobasilio2022
19408c987f
feat(errorHandling): Create fallback page for Server, Study and Series (#3592) 2023-08-15 22:59:29 -04:00
rodrigobasilio2022
5302e5b62b
feat(Thumbnail): Display set messages support & displaying of series inconsistencies in the thumbnail (#3499)
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
2023-08-11 19:16:25 -03:00
Alireza
5d435424e2
lint(curly): consistent use of curly brackets in codebase (#3584) 2023-08-09 10:07:33 -04:00
Igor Octaviano
0493a0d587
feat(Mode): Ability to overwrite mode configuration and small improvements (#3580) 2023-08-08 10:05:20 -04:00
Joe Boccanfuso
7bbc213f58
feat(DataSource): Allow for dynamic data source configuration and creation (#3543) 2023-07-20 11:43:05 -04:00
Bill Wallace
64f8bb580a
fix(colormap): update opacityMapping to opacity and use simple list renderer(#3464)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-07-04 11:57:59 -04:00
Joe Boccanfuso
ef4f28690a
fix(DICOM Upload): use correct Accept header for upload (#3498) 2023-06-27 11:44:46 -04:00
Alireza
52f419d188
feat(transferSyntax): Add customizable Transfer syntax through datasource config (#3406) 2023-06-22 20:47:50 -04:00
Salim Kanoun
1a91f210ab rename 2023-06-20 22:18:14 +02:00
Salim Kanoun
fa73a458bd WIP (not tested yet) 2023-06-20 09:34:20 +00:00
Joe Boccanfuso
cc73f15c8c
fix(Button): redesign of existing Button component for consistency (#3473) 2023-06-15 12:58:21 -04:00
Salim Kanoun
ad3ef3e8ef
Merge branch 'master' into customizable-TS 2023-06-09 21:45:03 +02:00
Joe Boccanfuso
da5c32bce3
fix(modal and dialogues): fixes as per specifications (#3438)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-06-07 08:31:09 -04:00
Salim Kanoun
18c6a47dca
Merge branch 'master' into customizable-TS 2023-06-07 13:08:49 +02:00
Alireza
828690cd3b
chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Salim Kanoun
50d2640876 accept both accept header and transfer syntax uid 2023-06-05 22:32:29 +02:00
Salim Kanoun
c3654b7ddf rework TS 2023-06-01 23:18:54 +02:00
Salim Kanoun
de60586b71 fixes 2023-05-29 23:39:06 +02:00
Salim Kanoun
f670678cf0 WIP accept header 2023-05-29 23:28:17 +02:00
Salim Kanoun
56633a67d9
Merge branch 'v3-stable' into customizable-TS 2023-05-29 23:26:36 +02:00
Alireza
c7bcf1134d
fix(staticwado): SM and RT and update the server with new data (#3422)
* fix bugs for the RT for the new demo

* fix SM with the static-wado server

* remove thumbnail from tmtv

* migration guide

* fix stability for the rt struct

* apply review comments

* add loading indicator to SM

* pdf works

* try to fix relative bulkData

* fix the rest

* fix preflight for the SM

* fix typo

* apply review comments

* yarn lock
2023-05-29 09:04:49 -04:00
Salim Kanoun
6da1734b6e Moving requested ts in createDicomWebApi (WIP) 2023-05-29 10:38:04 +02:00
Igor Octaviano
b684d80426
fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering (#3306)
* fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering

* Added a progress indicator when switching to a list of more than 1000 rows.

* Switched to using react-window to virtualize the dicom tag browser window.

* Added filtering to the DICOM tag browser with a new search UI widget.
Lots of tweaks and updates to the look-and-feel.

* Removed unused import.

* PR feedback including some UI tweaks.

* More PR feedback.

---------

Co-authored-by: Igor Octaviano <igor.octaviano@radicalimaging.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-05-26 11:42:25 -04:00
Joe Boccanfuso
685520acab
feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Joe Boccanfuso
52eb0edd6f
fix(dicomlocal): navigate /local to the work list and /localbasic to the (basic) viewer (#3389)
* fix(dicomlocal): navigate /local to the work list and /localbasic to the (basic) viewer
For TMTV, consider both the forward and back slash separator for modalities.

* Fix to TMTV isValidMode method.

* PR feedback:
- replace forward slashes with back slashes for modalities in the WorkList instead of in the Mode.

* Added query.series to DicomLocalDataSource.
2023-05-15 16:23:53 -04:00
Ashish Narnoli
af8bb27575
feat: query string dynamic app config (#3391)
* feat: query string dynamic app config

* fix: bug fix and couple of very small improvements
2023-05-15 14:52:48 -04:00
Bill Wallace
d5c5951e57
fix(SR): KO series being displayed in browser list (#3382)
* fix: KO series being displayed in browser list

* fix sr for volume viewports

* move highlight labelmap to RAF

* remove commented code

* fix the hydration bug for the SR

* apply review comments

* revert the key images for sr

* Remove some obsolete changes

* set initial image for sr instead of jump

* Remove viewportType stack

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-05-15 08:23:13 -04:00
Alireza
4fd81b5cd2
fix(local): fix modalities not showing in local (#3388)
* fix various bugs

* revert back docusaurus for styling issues
2023-05-12 15:04:19 -04:00
Alireza
84cb709b44
feat(panel and auth): fix study panel to not rely on priors and add token param to url (#3381)
* fix: multiframe

* fix the unnecessary use of prior since some servers dont like it

* add authentication via token in url

* add data citation

* add resources

* upgrade packages

* yarn lock

* apply review comments
2023-05-11 10:01:33 -04:00
Joe Boccanfuso
8eaa1877fd
fix(DICOM PDF and Video): fixes for local DICOM load and remote data sources (#3374)
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI

* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.

* Fixed broken e2e tests.
2023-05-10 12:42:48 -04:00
David Smith
0e3491d6bb
feat(proxy datasource): JSON server configuration launch (#2791)
* feat: delegating dicom web proxy datasource

* fix: configurably allow WADO image loader to issue preflight OPTIONS request

* Added documentation and fixed up some error handling from PR review

* review comments changes

* another small code review fix
2023-05-01 12:58:53 -04:00
Bill Wallace
b5b936b53e
fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Joe Boccanfuso
66f6e3eade
feat(DICOM Upload): Added new DICOM upload dialogue launched from the worklist page (#3326)
* feat(DICOM Upload)
OHIF #3297
- DicomWebDataSource.store.dicom now accepts an ArrayBuffer of data sets to store
- DicomWebDataSource.store.dicom now also accepts optional callbacks to track upload and an AbortSignal object to cancel upload
- Added DicomFileUploader class that performs and tracks the upload of a DICOM file
- Added various UI pieces for the upload: DicomUpload, DicomUploadProgress, DicomUploadProgressItem
- ProgressLoadingBar was extracted from LoadingIndicatorProgress so it can be reused
- Modal dialogues can now optionally prevent an outside click from closing the Modal

* Passing an XMLHttpRequest to the dataSource.store.dicom method instead of callbacks and AbortSignal.
Cleanup of various UI pieces to minimize code and increase readability.

* Made the DicomUpload component a customization module exported by the cornerstone extension.

* Exposed a copy of the data source configuration via the IWebApiDataSource interface.
Added dicomUploadEnabled to a data source's configuration.

* Code clean up.

* Upgraded the dicomweb-client version to one that provides the ability to
pass a custom HTTP request. DICOM upload uses that custom HTTP request
to track progress and cancel requests.

* Distinguished between failed and cancelled uploads.

* Allow no selection in the upload dialogue.
Fixed the styling of various progress information so that everything aligns.

* Switched from cornerstone wado image loader to cornerstone dicom image loader for DICOM upload.

* Added special cancelled icon to differentiate from failed.

* Added a bit of spacing between the upload progress bar and percentage.

* Fixed minor issue with upload rejection.

* Performance improvement for cancel all uploads:
- use React memo for each upload item progress (row)
- do not await each request of a cancel all

* Fixed various padding/spacing for the DICOM upload drop zone component.
Changed the border dashing for the DICOM upload drop zone to be a background image gradient.
Added hover and active effects to the 'Cancel All Uploads' text.
2023-04-28 16:13:47 -04:00
M.D
075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Joe Boccanfuso
51cb0519fc
fix(Browser history): fixed NPE when navigating a study via browser history and history navigation is now available via the navigateHistory command (#3337)
* fix(Browser history):
- fixed an NPE when navigating to a different study via the URL
- exposed browser history navigation via a command

* Added documentation for the navigateHistory command.
Moved the history object from UI to viewer.
2023-04-27 10:46:23 -04:00