Commit Graph

185 Commits

Author SHA1 Message Date
rodrigobasilio2022
3c4795d8cb
feat(read-only config): read only ui for SEG/RT/SR (#3586) 2023-08-16 10:26:28 -04:00
rodrigobasilio2022
19408c987f
feat(errorHandling): Create fallback page for Server, Study and Series (#3592) 2023-08-15 22:59:29 -04:00
Bill Wallace
884577a23d
fix: Integration test instability (#3597)
There are a couple of changes here which should improve stability of the tests.  Hopefully that will be sufficient, but it is difficult to tell for sure if it is complete.
2023-08-15 07:20:45 -04:00
rodrigobasilio2022
5302e5b62b
feat(Thumbnail): Display set messages support & displaying of series inconsistencies in the thumbnail (#3499)
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
2023-08-11 19:16:25 -03:00
Alireza
5d435424e2
lint(curly): consistent use of curly brackets in codebase (#3584) 2023-08-09 10:07:33 -04:00
Joe Boccanfuso
c3cd265430
fix(Measurement tracking): Side panel study browser can now be closed and measurements are still tracked (#3530) 2023-07-12 08:28:48 -04:00
Joe Boccanfuso
15ad8f29cd
fix(date formatting): Show study date as a fallback for an empty series date and show 'No Study Date' as a back up for both (#3483) 2023-06-29 10:43:56 -04:00
dxlin
d51211f6b9
fix(SR export): prevent empty sr description when export (#3173) 2023-06-19 10:35:53 -04:00
Joe Boccanfuso
cc73f15c8c
fix(Button): redesign of existing Button component for consistency (#3473) 2023-06-15 12:58:21 -04:00
Joe Boccanfuso
da5c32bce3
fix(modal and dialogues): fixes as per specifications (#3438)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-06-07 08:31:09 -04:00
Alireza
c7bcf1134d
fix(staticwado): SM and RT and update the server with new data (#3422)
* fix bugs for the RT for the new demo

* fix SM with the static-wado server

* remove thumbnail from tmtv

* migration guide

* fix stability for the rt struct

* apply review comments

* add loading indicator to SM

* pdf works

* try to fix relative bulkData

* fix the rest

* fix preflight for the SM

* fix typo

* apply review comments

* yarn lock
2023-05-29 09:04:49 -04:00
Joe Boccanfuso
685520acab
feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Joe Boccanfuso
c0fd4416ed
fix(Measurement): fixed line dashing of measurements in various scenarios (#3407)
* fix(Measurement): fixed line dashing of measurements in various scenarios

For a StackViewport simply rely on the SeriesInstanceUID being part of the
tracked measurements or not.

For a VolumeViewport first check the image id of the current image in the viewport
and then check the SeriesInstanceUID (like for a StackViewport) if an id is returned.
To reliably get the id of the current image, listen for the VOLUME_VIEWPORT_NEW_VOLUME event.

* Changes for PR comments.
2023-05-18 20:59:33 -04:00
Joe Boccanfuso
045e54aa02
fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined (#3392)
* fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined

* Updated cornerstone3d packages

* Fixed code comment.

* Removed unused imports.
2023-05-16 10:02:10 -04:00
Bill Wallace
d5c5951e57
fix(SR): KO series being displayed in browser list (#3382)
* fix: KO series being displayed in browser list

* fix sr for volume viewports

* move highlight labelmap to RAF

* remove commented code

* fix the hydration bug for the SR

* apply review comments

* revert the key images for sr

* Remove some obsolete changes

* set initial image for sr instead of jump

* Remove viewportType stack

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-05-15 08:23:13 -04:00
Alireza
84cb709b44
feat(panel and auth): fix study panel to not rely on priors and add token param to url (#3381)
* fix: multiframe

* fix the unnecessary use of prior since some servers dont like it

* add authentication via token in url

* add data citation

* add resources

* upgrade packages

* yarn lock

* apply review comments
2023-05-11 10:01:33 -04:00
Joe Boccanfuso
8eaa1877fd
fix(DICOM PDF and Video): fixes for local DICOM load and remote data sources (#3374)
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI

* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.

* Fixed broken e2e tests.
2023-05-10 12:42:48 -04:00
Bill Wallace
b5b936b53e
fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Alireza
f377153b60
fix(viewportDialog): viewportDialoge not appearing in non-tracked viewports (#3071)
* fix: viewportdialoge not appearing in non-tracked viewports

* feat(viewports): Introduce useViewportDialog and remove deprecated API

This commit introduces the `useViewportDialog` hook and replaces the deprecated `viewportDialogApi` with the new `viewportDialogState`. Additionally, the notifications in `OHIFCornerstoneRTViewport` and `OHIFCornerstoneViewport` have been removed. Finally, the `CinePlayer` component now accepts optional parameters.

* fix tests
2023-04-28 11:06:03 -04:00
M.D
075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Joe Boccanfuso
51cb0519fc
fix(Browser history): fixed NPE when navigating a study via browser history and history navigation is now available via the navigateHistory command (#3337)
* fix(Browser history):
- fixed an NPE when navigating to a different study via the URL
- exposed browser history navigation via a command

* Added documentation for the navigateHistory command.
Moved the history object from UI to viewer.
2023-04-27 10:46:23 -04:00
Joe Boccanfuso
d5ff590dfc
feat(DoubleClick): double click a viewport to one up and back (#3285)
* feat(DoubleClick): double click a viewport to one up and back

Added a toggleOneUp command that puts the active viewport into a 1x1 grid layout
and it toggles out of 'one-up' by restoring its saved 'toggleOneUpViewportGridStore'
from the StateSyncService.
Added double click customization for the Cornerstone extension with the
default double click handling being the toggleOneUp command.
Added a cypress test for the double click functionality.

* PR feedback:
- tracked viewport measurements no longer show as dashed when toggling one up
- disallowed double clicking near a measurement
- updated cornerstone3D dependencies to fix double click of TMTV and volume viewport 3D
- created ViewportGridService.getLayoutOptionsFromState

* Updated the ViewportGridService docs.

* Switched to using 'cornerstoneViewportClickCommands' and consistency with the context menu clicks.
2023-03-29 15:39:51 -04:00
Bill Wallace
8e9d7bd2bb
feat(findingSite): Allow customizing the measurement panel and show site/finding (#3155)
* feat: Allow customizing the measurements panel.

Also includes default display of the site/finding values from the DICOM
SR object.

Update fixes

PR review comments - move the recordInteraction to COmmandsManager.run

PR fixes

fix: Dependency updates to allow right click to be recognized

PR fixes

* Use newer CSWIL

* Make both the base measurements and the tracking measurements show codes

* Fix the right click context menu bringing up menu
2023-03-24 16:45:21 -04:00
Braden Morley
3b6822e7b6
fix(ui): autoscroll to new measurement on measurement table (#3223)
Fixed scrolling for measurement clicks

changed import
2023-03-21 21:36:53 -04:00
Bill Wallace
803f638401
feat: state sync service and hanging protocol updates to preserve state (#3131)
* feat: Add state sync and use it to remember viewport grid info

fix: Version updates

Fixes for toggling MPR mode

Fix the display when the interleaved load module fails

Fix the memory of the state to restore correctly

PR fixes for the state sync service

PR fixes

PR fixes

PR fixes

Added a hack warning to remove volumeDeactivate

Fixes for TMTV colormap setting

Fix the casing

Missed renames

fix: tests not running due to variance in ordering

Reverting some fixes to change case

PR changes - mostly comments and minor improvements

fix: All display sets were being updated on drag and drop

PR fixes - mostly renames

PR fixes

Test support for OHIF, for HP branch

test: Add at least a minimal set of automated tests for hanging protocols

Docs

PR fixes

Merge fixes

DOCS updates

Add an example of the mn hanging protocol

PR fixes

PR fixes

PR fixes

* Fix the drag and drop

PR fixes

* PR changes - update default keys for next/previous stage

* fix: Was storing the custom viewport grid too aggressively

Caused by a PR change misspelling a variable
2023-03-15 12:41:41 -04:00
Joe Boccanfuso
5670a4d8d1
feat(PanelService): Left or right side panel to auto start as closed but auto open when needed (#3212)
* feat(SidePanel)
OHIF issue #3135
- Added a method to set a callback for a Panel to invoke when it is ready
to be shown (e.g. its data is loaded).
- Implemented such methods for both the segmentation and measurement panels.
- The SidePanel component now adds a callback to Panel components so that
it will automatically open a Panel that was initially closed and yet to
be opened.
- Updated the OHIF documentation accordingly.

* PR feedback
- added a PanelService that centralized much of the logic that existed in panel PanelModule
- the SidePanel subscribes to PanelService.EVENTS.ACTIVATE_PANEL for each of its child panels

* Removed the PanelMeasurementTableTracking setMeasurementPanelContentReadyCallback method.

* Made the forceActive flag in the PanelService optional and defaulted it to false.

* Fixed failing top level exports unit test.

* - PanelService subscriptions are now per panel (id) so subscribers do not
necessarily need to check the panel id in the event when it is fired
- PanelService activate panel trigger subscriptions are now returned
so that they can be (better) managed outside of the service
- updated/created the various documentation for panels and PanelService

* Clarified various documentation.
Moved the code to add the activate panel triggers out of the extensions
and into the longitudinal mode.

* Removed the openWhenPanelActivated flag.
PanelService now conforms to extending PubSubService like the other services.
Updated various documentation.

* Fixed failing e2e, mpr test.

* Renamed the ActivatePanelTriggers type properties.
The ExtensionManager now sets the id of various modules as a property on each of those modules.
2023-03-09 22:30:09 -05:00
Joe Boccanfuso
35d0787211
feat(ViewportActionBar and CinePlayer): Add new design for action bar and cine player (#3204)
* feat(ViewportActionBar): OHIF issue #3123 (#3186)

* feat(ViewportActionBar): OHIF issue #3123

- Renamed previous viewport action bar to be LegacyViewportActionBar
- Components LegacyViewportActionBar depends on also renamed: LegacyCinePlayer and LegacyPatientInfo
- New Viewport coded to specs in issue
- added React hook useResizeObserver
- added some tailwind classes

* Updated tailwind to 3.2.7.
Put external imports like React at the top of the import list.

* feat(CinePlayer and ViewportActionBar) (#3198)

* feat(CinePlayer and ViewportActionBar)
- OHIF issue 3123

- new look cine control implemented
- new custom blue color in tailwind config for various hover backgrounds in the cine control
- new icons added for cine

- Tooltip component now can be placed top (center) on hover
- Tooltip component border colour now consistent with specs

- fixed NPE in ViewportActionBar

- upgraded tailwind to 3.2.7 in platform/ui
- fixed issues in various button components brought by tailwind 3.2.7 where classes now need important flag

- fixed issue with InputRange component so that the tracked value property can change externally
- InputRange component can now optionally show its label

- added new measurement tracking state service to hydrate SR without prompting
- segmentation can also now be hydrated without prompting

* PR feedback:
- cine centralized to OHIFCornerstoneViewport
- introduced a type for the CinePlayer properties

* Addressed PR comments and concerns...

The DOM ref for the root component of the ViewportActionBar is now added to state
so that the various callbacks and ResizeObserver are updated with it.
The CinePlayer FPS slider tooltip was moved up so that its arrow does not
intersect the FPS text.
The hover area for the CinePlayer slider tooltip is now the FPS < > buttons and text.
The tracked measurements are now filtered to only include those of the active
viewport series when the tracked measurement navigation arrows are used.

* Addressed PR comments...

The update to tailwind 3.2.7 caused several look-and-feel, UI regressions,
so we are rolling back to 3.2.4.
2023-02-28 15:57:19 -05:00
Alireza
926290f69e
feat: add more e2e tests for MPR and add test mode and extension (#3180)
* tests: add various e2e tests for MPR and measurements

wip

add cypress config

feat: add mode and extension for testing

add hp applied through search params

add MPR tests

apply review comments

add more e2e tests

update yarn lock

* fix unit tests failing
2023-02-17 15:04:07 -05:00
Joe Boccanfuso
ae4183852f
fix: Patient name handling as either Alphabetic object or simply string object
- formatPN should accept a string person name as well as an object with a Alphabetic field.
- For DICOM JSON data sources, spread in the patient data from the study object into the instance.
2023-02-16 13:50:59 -05:00
Joe Boccanfuso
f791a4cafb
fix(ViewportGrid) fill blank viewports with display sets not yet in grid. (#3154)
* fix(ViewportGrid): In ViewportGrid, fill blank viewports with display sets not yet in grid.
ViewportGridService now allows off-screen viewports to remain so that
so as to maintain continuity if they were filled by the UI/user.

* PR feedback: moved getNumViewportPanes into the ViewportGridService API.

* PR feedback:
- renamed some variables
- proper import/export of IDisplaySet
- added some comments for clarification
- fixed broken e2e tests

* Some missed rename of Services.
2023-02-14 10:01:39 -05:00
Bill Wallace
8af0362d12
fix(typescript): rename services to fix typescript (#3165)
* fix: Rename services to lower camel case, hp, measure

* fix: Rename DisplaySetService instances to displaySetService

* fix: Rename CornerstoneViewportService to lower camel case

* fix: Added lower case segmentationService rename

* rename other services (#3166)

* rename uiDialogService

* rename toolGroupService

* rename uiNotificationService

* rename viewportGridService

* rename syncGroupService

* rename CornerstoneCacheService

* Fix a syntax error in hotkeys

* Fix a couple of rename issues that were missed

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-10 16:46:09 -05:00
Leonardo Campos
8edd4ec054
fix(SR): fix Length and Bidirectional tools (#3143) 2023-02-05 21:03:19 -05:00
Joe Boccanfuso
58ae8690a7
fix: Clicking on measurement should highlight the measurement row in the measurement panel OHIF-433 (#3111)
* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel

Added selected flag to each OHIF measurement.
Listening to CS3D ANNOTATION_SELECTION_CHANGE to keep the selected flag in sync.

* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel

Fixed broken unit tests.

* PR feedback from Alireza:
- use MEASUREMENT_UPDATED event for selection changed
- added TODO to eventually have CS3D introduce the selected flag per annotation
- added MeasurementService._publishEvent

* PR feedback: now using _broadcastEvent
2023-01-13 13:57:18 -05:00
Joe Boccanfuso
ac90df356e
fix: OHIF-386 Disable Export and Create Report buttons if there are no tracked measurements (#3102)
Use the disabled Button component variant when no tracked measurements are present.
Made the buttons look as per the spec.

Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-01-09 12:19:48 -05:00
Bill Wallace
9a03bde0ae
Fix/sr hydration non tracking (#3080)
* fix:DICOM SR hydration - remove redundancies

feat:Allow save and restore on non-tracking view

* PR comments
2022-12-29 10:13:06 -05:00
Alireza
42dca11ae3
fix: various bugs with v33 re cine and colors (#3052)
* fix various bugs

* feat: initial work for debug page

* change throw to console error for color lookup table

* update packages

* apply review

* apply review comments
2022-12-05 09:53:59 -05:00
Bill Wallace
daa56a8449
feat(CustomizationService):Add a customization service (#2984)
* feat(customization):Add a customization service

Update UICustomizationService to v3-stable.

Also, adds an example customization for tab colors

* moved the customization service to ui category
2022-11-24 16:28:10 -05:00
Alireza
87eab39768
fix: remaining bugs for MPR and toolbar icon colors (#3026)
* feat: warn for overlapping segments

* fix: typo

* refactor mpr toggle and stack sync

* fix: wip for more general mpr

* fix: tool groups for mpr

* fix: changing of viewport id

* fix: viewport Id for the seg viewports

* fix

* update cornerstone version
2022-11-21 10:44:19 -05:00
Alireza
83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
Bill Wallace
7dc9b3549f
fix(viewer): View two or more specified studies (#2815) 2022-11-03 16:57:32 -04:00
md-prog
b93067b6a2
feat: Annotation and Measurements support on multi-frame DICOM (#2973)
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy

* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number

* fixed minor React bugs (errors on console)

* fixed React's console bugs that are logged for some series that doesn't have "description"

* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)

* metadata parser fix - providing default values of imagePlaneModule

* measurement SR support on multi-frame DICOM

* bug fix - jumping to the selected measurment on multi-frame DICOM

* upgrade dcmjs dependency to 2.8.1

* StudySummary component - allow "description" to be null

* make getUIDsFromImageID() method public from MetadataProvider

* imageId usage fixes to be more stable

* change the variable name to be more meaningful

* fix metaProvider importing

* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.

* use Array.findIndex instead of plain for loop

* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.

* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits

* simple code refactoring

* refactoring for checking undefined values - mappedAnnotations

* remove unreachable code

* code refactoring  - prefer conditional chaining

* fix how we access imageIds of viewport (StackViewport)
2022-10-13 11:07:56 -04:00
Alireza
7f770e4fb6
fix: cine scrolling was broken when navigating back to studylist (#2974)
* fix: cine clean up when exited

* fix: make cine work while dragging and dropping another displayset
2022-10-07 00:32:28 -04:00
Alireza
55a1704e4a
feat: upgrade tailwind to version 3 (#2933)
* initial upgrade commit for tailwind

* fix: inconsistensies in button

* fix: various places with conflicts

* final fixes

* fix: dialog header color

* apply review
2022-09-19 20:02:53 -04:00
Alireza
71f5fa8e2f
fix: left right hotkeys and remove non working ones (#2922)
* fix: constant should be enums in cs3d

* remove non working hotkeys for now
2022-09-08 22:02:20 -04:00
Erik Ziegler
bd1c38c00c
feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: cs3d tools and toolGroups (#20)

* add more tools to work with cs3d mode

* fix hotkeys

* add stack manager usage for stach viewports

* add image scrollbar

* wip viewport overlay

* fix toAnnotation schema for tools

* fix the unnecessary size change that triggered resize

* hanging protocol improvement to allow unmatched errors

* study description matching for hanging protocol

* fix the displaysetOptions to work

* fix handle the active tool when a new viewport is added

* fix separate toolGroups for mode

* apply review comments

* apply review comments

* yarn lock

* feat: overlay component (#21)

* fix default displayset options

* add viewport overlay

* apply review comments

* feat: loading and orientation indicators (#22)

* add loading indicator

* add orientation marker initial work

* apply review comments

* fix: orientation markers (#23)

* finished the orientation markers

* fix various broken cypress tests

* apply review comments

* update yarn lock

* feat: re-working measurement tracking mode with cornerstone3d (#2805)

* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: Add Measurement tracking mode with cs3D (#2789)

* feat: first render for cornerstone3d tracked viewport

* make tool active work

* wip for SR extension

* renamed dicom sr to cornerstone dicom sr

* remove cornerstone from dicom pdf and video

* move dicom sr logic to sr extension

* feat: Add hydration for the length tool

* fix SR display tool for length using cs3d

* fix default config

* fix: various bugs with sr viewport and tracking

* fix promptying to continue tracking for when SR is created

* feat: add keep trackign of unique identifiers

* fix hydration for same imageIds

* feat: Add SR toolGroup creation on modeEnter

* feat: remove the need for separate mapper for SR hydration

* add SR display for ellipse

* handle hydration of elliptical ROI tool

* remove cornerstone extension

* add arrow mapping

* feat: Add ArrowAnnotate SR display and hydration

* apply review comments

* apply review comments

* move viewport labels to the viewportData

* apply review comments

* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)

* fix: integration cypress tests with cornerstone3D

* revert to addOrUpdate as it makes more sense

* fix local drag and drop

* fix tests

* move dicomLoaderService to cornerstone extension

* fix various import bugs

* fix bug for local PT series

* fix various unit tests

* bump cs3d versions

* add angle and magnify tool

* bump dependencies to avoid broken peerDeps

* feat: add initial work for capture using cs3d

* feat: show annotations on the image capture

* feat: add svg layer export

* feat: Add CINE Tool

* feat: remove unnecessary viewport rendering for cine state changes

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>

* docs: modify and improve documentation (#2800)

* cleanup docs versionings

* feat: Add all version explanations

* version docs for 3.0

* wip for changing docs

* wip for updated docs

* add utility module documentation

* fix demo with nohoisting of history

* add slides and video to resources

* apply review comments

* fix: drag and drop SR into SR viewport (#2803)

* update yarn lock

Co-authored-by: Erik <erik.sweed@gmail.com>

* update pathnames to match v3-stable

* update the e2e pathname

* fix: various bugs with regard to tracking workflow (#2811)

* fix: various issues with measurement panel

* fix: update default tool style for annotations

* fix: annotatoin label getting removed

* feat: Add backward compatibility for SR hydration with legacy cornerstone

* fix: cursors and ellipse ROI max style

* fix: ArrowAnnotate SRDisplay

* apply review comments

* bump package versions

* fix: bugin rehydration of SR

* fix: e2e tests

* fix active viewport thickness and arrowTool ui

* add readme for measurement tracking

* use uploaded image for readme

* add back images

* try to fix e2e test

* fix: window level presets hotkeys

* Update README.md

* update yarn lock

* feat: volume api and TMTV mode (#2817)

* feat: volumeAPI and TMTV mode

* feat: use cs3d cache service to obtain viewportData

* wip for volume api

* wip: fusion viewport

* feat: add blend mode option

* wip for image scrollbar

* fix drag and drop thumbnail

* wip for image scrollbar for voluems

* fix: element mismatch bug for scroll

* feat: Add image scrollbar to volumes

* feat: add syncGroups to volume api

* feat: add tmtv mode initial setup

* feat: add initial image options for the stack viewports

* feat: Add custom load strategy for volume viewports via HP

* apply review comments

fix: Jump presets cs3d (#2812)

* feat: Add JumpPreset to OHIF for Cornerstone3D

* fix: accessing viewport service from servicesManager

feat: volume API and TMTV mode (#2814)

* fix: do not display overlays on mip viewports

* feat: add optional disableCommands for toggle buttons

* fix: toggleCrossharis

* feat: config the crosshairs

* feat: add PetSUV Panel for changing metadata

* feat: initial work for the rectangleROIThreshold panel

* wip: measurement service

* roi threshold working

* feat: Add displayText to segmentations

* feat: add remove segmentation

* feat: add csv export

* feat: add RT export for annotations in tmtv mode

* fix: fusion to use pt in tmtv mode and measuremet mappings

* fix: various bugs

* apply review comments

* apply review comments

* feat: add fusion color maps

* add readme to tmtv mode

* Update README.md

* fix: try to fix build

* fix unit tests

* Update README.md

* feat: add about to the panel

* fix: changing strategy in roi panel

* apply review comments

* update package versions

* wip for stackPrefetch

* fix: cornerstone3d hydration and renaming (#2818)

* update readme

* renamed cornerstone extension

* wip for renaming cornerstone3D variables

* wip for renaming cornerstone3D variables

* wip for fixing bugs for SR viewport

* fix: jumpToMeasurement and initial label after hydration

* fix: fileName capitalization

* feat: use the new prefetch stack in the cs3d (#2820)

* feat: use the new prefetch stack in the cs3d

* use viewport scroll api for stack viewport

* fix cine stop when scrollbar changes

* feat: use new prefetch events

* fix loading state to not show repeatedly

* fix: various bugs for tmtv mode thresholding and new icons (#2823)

* feat: make tmtv mode available in worklist

* feat: add new icons for tmtv mode

* feat: add fusion color icon

* fix: parallel scale calculation

* fix: bump Cornerstone to get large image support working

* fix: Fix issues with CPU viewport flipping, including config files

* fix: bump cornerstone to fix magnify tool

* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport

* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys

* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors

* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)

Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.

* bump: dependency versions to fix hydration bugs (#2848)

* bump: dcmjs version to fix hydration bugs

* try to fix tests

* bump dependency versions

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
James Petts
509c41fbab
fix: retrieveSeriesMetadata (#2703) 2022-02-08 08:17:37 -05:00
Patrick Wespi
c2bbfc2cac fix: remove temporary link element after csv download 2022-01-04 09:10:35 +01:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Bill Wallace
2327b4ae12 feat: Add Static WADO display (#2499)
* Rebased to have just the static view changes

* Changes based on the PR

* Couple more changes for the PR

* Removed an extraneous log

* Fix the study worklist display when returning to the page

* Added some documentation on the static wado data source setup, and a
bounds check change on the Queue test which was failing

* PR updates - change the undefined study description to '' and remove the aws deploy

* Fixed the e2e tests to actually pass/fail correctly on actual results
2021-08-24 17:53:03 -04:00