* Add customization URL parameter
* fix: Preserve should be customizeable
* Update customizations docs
* fix: Overlay items on patient name
* Add customization test
* Fix resolve to absolute path
* fix: Warn on no data in load
* Remove unused customization stuff
* fix: PR comments
* Update stored parameters to only use an array for mulitples
* Remove requires ohif.* special call out
* Remove strict mode
* PR comments
* Document segmentation examples
* Add three examples as requested
* PR comments
* lock
* Remove old customizatoin export
* fix: Ordering issues on customization loads
* fix: Use correct default for dev builds app config
* Fixes for conflicts
* chore: restore pnpm-lock.yaml to match master
The lockfile diff was incidental peer-descriptor churn and carried no
functional dependency change. It tripped the CircleCI security-audit gate
(which only runs when pnpm-lock.yaml is in the PR diff), surfacing a
pre-existing critical `decompress` transitive vuln that also exists on
master. Restoring master's lockfile removes the audit trigger.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* fix(ci): restore json5 lockfile entry; ignore unfixable decompress GHSA
The previous commit restored pnpm-lock.yaml from master, which dropped the
json5@2.2.3 entry that platform/core legitimately depends on (JSONC parsing
for the customization feature). That broke `--frozen-lockfile` install
(ERR_PNPM_OUTDATED_LOCKFILE). This restores the correct lockfile.
Because the lockfile must change (json5), the CircleCI security-audit gate
runs and previously failed on a critical `decompress` <=4.2.1 zip-slip
advisory. This is a pre-existing transitive vuln (present on master too) with
no published patch — decompress's latest release is 4.2.1, so no version
bump/override can resolve it. It reaches the tree only via @itk-wasm/dam, a
build/data-asset extraction tool under @cornerstonejs/labelmap-interpolation.
Add GHSA-mp2f-45pm-3cg9 to the existing pnpm-workspace.yaml auditConfig
ignoreGhsas accepted-risk list, matching how the repo already exempts other
build-tooling advisories. `pnpm audit --audit-level high` now passes locally
(1 critical ignored, 0 high).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* test(e2e): fix visitStudy URL encoding that broke mpr2 study load
The visitStudy rewrite (added for the ?customization= option) built the URL
with new URLSearchParams({ StudyInstanceUIDs: studyInstanceUID }), which
percent-encodes the value. mpr2.spec.ts embeds an extra param in the UID
string ('<uid>&hangingprotocolid=mpr'), so the & and = were encoded and the
whole thing collapsed into one invalid StudyInstanceUIDs value -> the study
could not be found ('studies are not available'), the viewer never rendered,
and the side-panel-header-right click timed out.
Restore master's raw concatenation for StudyInstanceUIDs (so embedded params
survive as separate query params) while still appending the customization
option separately. Only mpr2 embeds & in the UID, matching the single failure.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* PR comments
---------
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* fix(SR): Added support for spline and live wire SR items.
* Apply suggestion from @greptile-apps[bot]
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
* Add a script to checkout a worktree for test builds
* fix: Allow download for testing sr validator
* Remove script that wasn't intended to be included
* Bump CS3D version.
* PR comments - simplify code and use single codepath for download
* Allow both download and save buttons for SEG and RTSTRUCT
---------
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(window level): Set up listener for viewport availability such that the initial window level can be read and displayed.
* PR feedback.
* PR feedback.
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
This was done by using an array of representation types instead of a single type for a panel.
The first element of the array is the primary type of the panel, and the rest are secondary types
that can also be displayed in the panel.
PR feedback:
- added test to check number of segments in side panel for 3D only view
- fixed jumping to segment in 3D only view
- fixed exception when adding contour segment in 3D only view
* [WIP] Fix contour annotations RTSS saving
* fix: Export image sop image reference provider
* Fixes for download with filename
* Updates to fix metadata issues with CS3D
* Updates to save menu
* Fixing some additional re-save metadata
* Add support for saving with predecessor image sequence
* PR comment fixes
* fix: Load RTSS after save
* fix segmentation save
* fix load of mixed seg/rt studies
* Use frame module to get information on the frame shown
* Fix study browser to use instances.length when numImageFrames not present
* fix: Load of display set split from multiple non-FOR referenes
* Fix RT and SEG applying to wrong series because of using
referenced series sequence without checkout sop instances
* Fix save seg
* Update to released CS3D versions
* test: Add revokeObjectURL to test download blob
* Add hard dependency on mode-basic to fix build order issues
* fix: build
* Try to fix build segmentation
* PR comments
* PR comment update
* Opacity, fill and outline properties for active and inactive contours
are now consistent with those for label map segmentations.
The properties for inactive segmentations are applied to BOTH
inactive contours and label maps.
* Activate the selected segmentation for a type when the alpha, outline width, or fill/outline visibility is changed.
